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Giuseppe D'Agostino edited this page Feb 12, 2023 · 2 revisions

Welcome to the papplain wiki!

Roadmap

  1. Add colData plotting functions ✅

  2. Add QC plots in papplain()/doQC()

  3. Add trajectory wrappers

  • 3.1. slingshot wrapper
  • 3.2. TSCAN DE wrapper
  • 3.3. entropy/cytoTRACE kernel?

  1. Add integration diagnostics

  2. Add DE

  3. Add GSEA/ORA

On the side: restructure functions so they are more modular (see plot_Coldata()), e.g. call integration methods as internal functions/methods.

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