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cmalinmayor committed Aug 22, 2024
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This exercise was created by Benjamin Gallusser and Albert Dominguez Mantes,
and updated for 2024 by Caroline Malin-Mayor.

<img src="figures/tracking.gif" width="500"/><img src="figures/ilp_nodiv.png" width="500"/>
<img src="figures/tracking.gif" width="500"/>

## Objective:
- Write a pipeline that takes in cell detections and links them across time to obtain lineage trees
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```
to set up the environment for this exercise. This will take a few minutes.

2. Run
```
jupyter lab
```
, double-click on the `exercise.ipynb` files and follow the instructions in the notebook.

Alternatively, open `exercise.ipynb` in VSCode with the jupyter extension and the `09-tracking` environment activated.
2. Open `exercise.ipynb` in VSCode with the jupyter extension and select the `09-tracking` kernel.


## Overview: Tracking by detection with an integer linear program (ILP)
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