iphop v1.3.3

deng-lab · Jun 21, 2024 · ee25246 · ee25246
1 parent a3b6025
commit ee25246
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Showing 2 changed files with 15 additions and 16 deletions.
diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
@@ -3,8 +3,8 @@ name: Docker
 on:
   push:
     tags:
-      - 'v*'
-      - 'docker*'
+      - "v*"
+      - "docker*"
 
 jobs:
   push_to_registry:
@@ -20,8 +20,8 @@ jobs:
           #   image: denglab/viroprofiler-binning
           # - dockerfile: ./docker/viroprofiler-geneannot/Dockerfile
           #   image: denglab/viroprofiler-geneannot
-          # - dockerfile: ./docker/viroprofiler-host/Dockerfile
-          #   image: denglab/viroprofiler-host
+          - dockerfile: ./docker/viroprofiler-host/Dockerfile
+            image: denglab/viroprofiler-host
           # - dockerfile: ./docker/viroprofiler-replicyc/Dockerfile
           #   image: denglab/viroprofiler-replicyc
           # - dockerfile: ./docker/viroprofiler-taxa/Dockerfile
@@ -34,8 +34,8 @@ jobs:
           #   image: denglab/viroprofiler-bracken
           # - dockerfile: ./docker/viroprofiler-phamb/Dockerfile
           #   image: denglab/viroprofiler-phamb
-          - dockerfile: ./docker/viroprofiler-virsorter2/Dockerfile
-            image: denglab/viroprofiler-virsorter2
+          # - dockerfile: ./docker/viroprofiler-virsorter2/Dockerfile
+          #   image: denglab/viroprofiler-virsorter2
     permissions:
       contents: read
       packages: write
@@ -46,19 +46,19 @@ jobs:
       # Docker Buildx
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@v2
-      
+
       - name: Log in to Docker Hub
         uses: docker/login-action@v2
         with:
           username: ${{ secrets.DOCKER_USER }}
           password: ${{ secrets.DOCKER_PASSWORD }}
-      
+
       - name: Extract metadata (tags, labels) for Docker
         id: meta
         uses: docker/metadata-action@v4
         with:
           images: ${{ matrix.image }}
-      
+
       - name: Build and push Docker image
         uses: docker/build-push-action@v4
         with:

diff --git a/docker/viroprofiler-host/env_host.yml b/docker/viroprofiler-host/env_host.yml
@@ -1,10 +1,9 @@
 name: viroprofiler-host
 channels:
-    - conda-forge
-    - bioconda
+  - conda-forge
+  - bioconda
 dependencies:
-    - conda-forge::procps-ng=4.0.0
-    - blast
-    - seqkit
-    - iphop
-
+  - conda-forge::procps-ng=4.0.0
+  - blast
+  - seqkit
+  - iphop