Merge branch 'develop'

README.md

@@ -67,7 +67,7 @@ Further information and artwork:
 An Nvidia graphics card with compute capability 6.0 or higher is needed. Please check [https://en.wikipedia.org/wiki/CUDA#GPUs_supported](https://en.wikipedia.org/wiki/CUDA#GPUs_supported).
 
 # 💽 Installer
-Installer for Windows: [alien-installer.msi](https://alien-project.org/media/files/alien-installer.msi) (Updated: 2024-03-16)
+Installer for Windows: [alien-installer.msi](https://alien-project.org/media/files/alien-installer.msi) (Updated: 2024-04-22)
 
 In the case that the program crashes for an unknown reason, please refer to the troubleshooting section in [alien-project.org/downloads.html](https://alien-project.org/downloads.html).
 
@@ -137,9 +137,10 @@ A short architectural overview of the source code can be found in the [documenta
 
 ALIEN has been initiated, mainly developed and maintained by [Christian Heinemann](mailto:[email protected]). Thanks to all the others who contributed to this repository:
 - [tlemo](https://github.com/tlemo)
-- [TheBarret](https://github.com/TheBarret)
 - [mpersano](https://github.com/mpersano)
 - [dguerizec](https://github.com/dguerizec)
+- [Will Allen](https://github.com/willjallen)
+- [TheBarret](https://github.com/TheBarret)
 
 The following external libraries are used:
 - [CUDA Toolkit](https://developer.nvidia.com/cuda-toolkit)

RELEASE-NOTES.md

@@ -1,5 +1,16 @@
 # Release notes
 
+## [4.9.1] - 2024-04-26
+### Added
+- gui/browser: label new simulations
+- gui/browser: allow to replace simulations and genomes
+
+### Changed
+- gui/browser: ignore upper and lower case in the browser filter
+
+### Fixed
+- gui/browser: preserve subfolder names when renaming folders
+
 ## [4.9.0] - 2024-04-22
 ### Added
 - engine, gui/simulation parameters: conditional and unconditional energy inflow from external energy source

scripts/Server/helpers.php

@@ -1,5 +1,7 @@
 <?php
     const MAX_MINUTES_FOR_INACTIVITY = 60; 
+    const PUBLIC_WORKSPACE_TYPE = 0;
+    const ALIEN_PROJECT_WORKSPACE_TYPE = 1;
     const PRIVATE_WORKSPACE_TYPE = 2;
 
     function connectToDB()

scripts/Server/hooks.php

@@ -17,14 +17,23 @@ function sendDiscordMessage($payload) {
     // functions for Discord messages
     function createAddResourceMessage($type, $simName, $userName, $simDesc, $width, $height, $particles) {
         if ($type == 0) {
-            return createAddSimulationMessage($simName, $userName, $simDesc, $width, $height, $particles);
+            return createMessageForSimulation("New simulation added to the database", $simName, $userName, $simDesc, $width, $height, $particles);
         }
         else {
-            return createAddGenomeMessage($simName, $userName, $simDesc, $width, $height, $particles);
+            return createMessageForGenome("New genome added to the database", $simName, $userName, $simDesc, $width, $height, $particles);
         }
     }
 
-    function createAddSimulationMessage($simName, $userName, $simDesc, $width, $height, $particles) {
+    function createUpdateResourceMessage($type, $simName, $userName, $simDesc, $width, $height, $particles) {
+        if ($type == 0) {
+            return createMessageForSimulation("Simulation updated in the database", $simName, $userName, $simDesc, $width, $height, $particles);
+        }
+        else {
+            return createMessageForGenome("Genome updated in the database", $simName, $userName, $simDesc, $width, $height, $particles);
+        }
+    }
+
+    function createMessageForSimulation($message, $simName, $userName, $simDesc, $width, $height, $particles) {
         $particlesString = $particles < 1000 ? "{$particles}" : strval((int)($particles/1000)) . " K";
         return json_encode([
             "username" => "alien-project",
@@ -33,7 +42,7 @@ function createAddSimulationMessage($simName, $userName, $simDesc, $width, $heig
             "embeds" => [
                 [
                     "author" => [
-                        "name" => "New simulation added to the database",
+                        "name" => $message,
                         "icon_url" => "https://alien-project.org/alien-server/galaxy.png"
                     ],
                     "title" => $simName,
@@ -60,15 +69,15 @@ function createAddSimulationMessage($simName, $userName, $simDesc, $width, $heig
         ], JSON_UNESCAPED_SLASHES | JSON_UNESCAPED_UNICODE);
     }
 
-    function createAddGenomeMessage($simName, $userName, $simDesc, $width, $height, $particles) {
+    function createMessageForGenome($message, $simName, $userName, $simDesc, $width, $height, $particles) {
         return json_encode([
             "username" => "alien-project",
             "avatar_url" => "https://alien-project.org/alien-server/logo.png",
             "content" => "",
             "embeds" => [
                 [
                     "author" => [
-                        "name" => "New genome added to the database",
+                        "name" => $message,
                         "icon_url" => "https://alien-project.org/alien-server/genome.png"
                     ],
                     "title" => $simName,

scripts/Server/replacesimulation.php

@@ -0,0 +1,69 @@
+<?php
+    require './helpers.php';
+    require './hooks.php';
+
+    function closeAndExit($db) {
+        echo json_encode(["result"=>false]);
+        $db->close();
+        exit;
+    }
+
+
+    $db = connectToDB();
+    $db->begin_transaction();
+
+    $userName = $_POST["userName"];
+    $pw = $_POST["password"];
+
+    if (!checkPw($db, $userName, $pw)) {
+        closeAndExit($db);
+    }
+
+    $obj = $db->query("SELECT u.ID as id FROM user u WHERE u.NAME='".addslashes($userName)."'")->fetch_object();
+    if (!$obj) {
+        closeAndExit($db);
+    }
+
+    $success = false;
+    $particles = (int)$_POST['particles'];
+    $version = $_POST['version'];
+    $width = (int)$_POST['width'];
+    $height = (int)$_POST['height'];
+    $content = $_POST['content'];
+    $settings = $_POST['settings'];
+    $simId = $_POST['simId'];
+    $size = strlen($content);
+    $statistics = array_key_exists('statistics', $_POST) ? $_POST['statistics'] : "";
+
+    $obj = $db->query("SELECT sim.NAME as name, sim.TYPE as type, sim.FROM_RELEASE as workspace FROM simulation sim WHERE sim.ID='".addslashes($simId)."'")->fetch_object();
+    if (!$obj) {
+        closeAndExit($db);
+    }
+
+    if ($userName != 'alien-project' && $obj->workspace == ALIEN_PROJECT_WORKSPACE_TYPE) {
+        closeAndExit($db);
+    }
+
+    $stmt = $db->prepare("UPDATE simulation SET PARTICLES=?, VERSION=?, CONTENT=?, WIDTH=?, HEIGHT=?, SETTINGS=?, SIZE=?, STATISTICS=?, CONTENT2=?, CONTENT3=?, CONTENT4=?, CONTENT5=?, CONTENT6=? WHERE ID=?");
+    if (!$stmt) {
+        closeAndExit($db);
+    }
+
+    $emptyString = '';
+    $stmt->bind_param("issiisissssssi", $particles, $version, $content, $width, $height, $settings, $size, $statistics, $emptyString, $emptyString, $emptyString, $emptyString, $emptyString, $simId);
+
+    if (!$stmt->execute()) {
+        closeAndExit($db);
+    }
+
+    // create Discord message
+    if ($obj->workspace != PRIVATE_WORKSPACE_TYPE) {
+        $discordPayload = createUpdateResourceMessage($obj->type, $obj->name, $userName, $simDesc, $width, $height, $particles);
+        sendDiscordMessage($discordPayload);
+    }
+
+    echo json_encode(["result"=>true]);
+
+    $db->commit();
+    $db->close();
+?>

source/Base/Cache.h

@@ -8,7 +8,7 @@ template<typename Key, typename Value, int MaxEntries>
 class Cache
 {
 public:
-    void insert(Key const& key, Value const& value);
+    void insertOrAssign(Key const& key, Value const& value);
 
     std::optional<Value> find(Key const& key);
 
@@ -21,7 +21,7 @@ class Cache
 /* Implementation                                                       */
 /************************************************************************/
 template <typename Key, typename Value, int MaxEntries>
-void Cache<Key, Value, MaxEntries>::insert(Key const& key, Value const& value)
+void Cache<Key, Value, MaxEntries>::insertOrAssign(Key const& key, Value const& value)
 {
     if (_cacheMap.size() >= MaxEntries) {
         _cacheMap.erase(_usedKeys.front());

source/Base/GlobalSettings.cpp

@@ -153,7 +153,7 @@ void GlobalSettings::setDebugMode(bool value) const
     _impl->_debugMode = value;
 }
 
-bool GlobalSettings::getBoolState(std::string const& key, bool defaultValue)
+bool GlobalSettings::getBool(std::string const& key, bool defaultValue)
 {
     bool result;
 #ifdef _WIN32
@@ -164,7 +164,7 @@ bool GlobalSettings::getBoolState(std::string const& key, bool defaultValue)
     return result;
 }
 
-void GlobalSettings::setBoolState(std::string const& key, bool value)
+void GlobalSettings::setBool(std::string const& key, bool value)
 {
 #ifdef _WIN32
     setBoolToWinReg(key, value);
@@ -173,7 +173,7 @@ void GlobalSettings::setBoolState(std::string const& key, bool value)
 #endif
 }
 
-int GlobalSettings::getIntState(std::string const& key, int defaultValue)
+int GlobalSettings::getInt(std::string const& key, int defaultValue)
 {
     int result;
 #ifdef _WIN32
@@ -184,7 +184,7 @@ int GlobalSettings::getIntState(std::string const& key, int defaultValue)
     return result;
 }
 
-void GlobalSettings::setIntState(std::string const& key, int value)
+void GlobalSettings::setInt(std::string const& key, int value)
 {
 #ifdef _WIN32
     setIntToWinReg(key, value);
@@ -193,7 +193,7 @@ void GlobalSettings::setIntState(std::string const& key, int value)
 #endif
 }
 
-float GlobalSettings::getFloatState(std::string const& key, float defaultValue)
+float GlobalSettings::getFloat(std::string const& key, float defaultValue)
 {
     float result;
 #ifdef _WIN32
@@ -204,7 +204,7 @@ float GlobalSettings::getFloatState(std::string const& key, float defaultValue)
     return result;
 }
 
-void GlobalSettings::setFloatState(std::string const& key, float value)
+void GlobalSettings::setFloat(std::string const& key, float value)
 {
 #ifdef _WIN32
     setFloatToWinReg(key, value);
@@ -213,7 +213,7 @@ void GlobalSettings::setFloatState(std::string const& key, float value)
 #endif
 }
 
-std::string GlobalSettings::getStringState(std::string const& key, std::string const& defaultValue)
+std::string GlobalSettings::getString(std::string const& key, std::string const& defaultValue)
 {
     std::string result;
 #ifdef _WIN32
@@ -224,7 +224,7 @@ std::string GlobalSettings::getStringState(std::string const& key, std::string c
     return result;
 }
 
-void GlobalSettings::setStringState(std::string const& key, std::string value)
+void GlobalSettings::setString(std::string const& key, std::string value)
 {
 #ifdef _WIN32
     setStringToWinReg(key, value);
@@ -233,6 +233,19 @@ void GlobalSettings::setStringState(std::string const& key, std::string value)
 #endif
 }
 
+std::vector<std::string> GlobalSettings::getStringVector(std::string const& key, std::vector<std::string> const& defaultValue)
+{
+    auto joinedString = getString(key, boost::join(defaultValue, "\\"));
+    std::vector<std::string> result;
+    boost::split(result, joinedString, boost::is_any_of("\\"));
+    return result;
+}
+
+void GlobalSettings::setStringVector(std::string const& key, std::vector<std::string> value)
+{
+    setString(key, boost::join(value, "\\"));
+}
+
 GlobalSettings::GlobalSettings()
 {
     _impl = std::make_shared<GlobalSettingsImpl>();

source/Base/GlobalSettings.h

@@ -2,6 +2,7 @@
 
 #include <memory>
 #include <string>
+#include <vector>
 
 struct GlobalSettingsImpl;
 
@@ -16,17 +17,20 @@ class GlobalSettings
     GlobalSettings(GlobalSettings const&) = delete;
     void operator=(GlobalSettings const&) = delete;
 
-    bool getBoolState(std::string const& key, bool defaultValue);
-    void setBoolState(std::string const& key, bool value);
+    bool getBool(std::string const& key, bool defaultValue);
+    void setBool(std::string const& key, bool value);
 
-    int getIntState(std::string const& key, int defaultValue);
-    void setIntState(std::string const& key, int value);
+    int getInt(std::string const& key, int defaultValue);
+    void setInt(std::string const& key, int value);
 
-    float getFloatState(std::string const& key, float defaultValue);
-    void setFloatState(std::string const& key, float value);
+    float getFloat(std::string const& key, float defaultValue);
+    void setFloat(std::string const& key, float value);
 
-    std::string getStringState(std::string const& key, std::string const& defaultValue);
-    void setStringState(std::string const& key, std::string value);
+    std::string getString(std::string const& key, std::string const& defaultValue);
+    void setString(std::string const& key, std::string value);
+
+    std::vector<std::string> getStringVector(std::string const& key, std::vector<std::string> const& defaultValue);
+    void setStringVector(std::string const& key, std::vector<std::string> value);
 
 private:
     GlobalSettings();

source/Base/Resources.h

@@ -2,8 +2,8 @@
 
 namespace Const
 {
-    std::string const ProgramVersion = "4.9.0";
-    std::string const DiscordLink = "https://discord.gg/7bjyZdXXQ2";
+    std::string const ProgramVersion = "4.9.1";
+    std::string const DiscordURL = "https://discord.gg/7bjyZdXXQ2";
 
     std::string const BasePath = "resources/";
 

source/Cli/Main.cpp

@@ -51,6 +51,7 @@ int main(int argc, char** argv)
         simController->newSimulation(simData.auxiliaryData.timestep, simData.auxiliaryData.generalSettings, simData.auxiliaryData.simulationParameters);
         simController->setClusteredSimulationData(simData.mainData);
         simController->setStatisticsHistory(simData.statistics);
+        simController->setRealTime(simData.auxiliaryData.realTime);
         std::cout << "Device: " << simController->getGpuName() << std::endl;
         std::cout << "Start simulation" << std::endl;
 
@@ -68,6 +69,7 @@ int main(int argc, char** argv)
         simData.mainData = simController->getClusteredSimulationData();
         simData.auxiliaryData.simulationParameters = simController->getSimulationParameters();
         simData.statistics = simController->getStatisticsHistory().getCopiedData();
+        simData.auxiliaryData.realTime = simController->getRealTime();
         if (outputFilename.empty()) {
             std::cout << "No output file given." << std::endl;
             return 1;

source/Gui/AlienImGui.cpp

@@ -1586,7 +1586,6 @@ bool AlienImGui::BasicSlider(Parameter const& parameters, T* value, bool* enable
         }
 
         //slider
-
         T sliderValue;
         T minValue = value[0], maxValue = value[0];
         int sliderValueColor = 0;

source/Gui/AlienWindow.cpp

@@ -11,12 +11,12 @@ _AlienWindow::_AlienWindow(std::string const& title, std::string const& settings
     : _title(title)
     , _settingsNode(settingsNode)
 {
-    _on = GlobalSettings::getInstance().getBoolState(settingsNode + ".active", defaultOn);
+    _on = GlobalSettings::getInstance().getBool(settingsNode + ".active", defaultOn);
 }
 
 _AlienWindow::~_AlienWindow()
 {
-    GlobalSettings::getInstance().setBoolState(_settingsNode + ".active", _on);
+    GlobalSettings::getInstance().setBool(_settingsNode + ".active", _on);
 }
 
 void _AlienWindow::process()

source/Gui/AutosaveController.cpp

@@ -15,12 +15,12 @@ _AutosaveController::_AutosaveController(SimulationController const& simControll
     : _simController(simController)
 {
     _startTimePoint = std::chrono::steady_clock::now();
-    _on = GlobalSettings::getInstance().getBoolState("controllers.auto save.active", true);
+    _on = GlobalSettings::getInstance().getBool("controllers.auto save.active", true);
 }
 
 _AutosaveController::~_AutosaveController()
 {
-    GlobalSettings::getInstance().setBoolState("controllers.auto save.active", _on);
+    GlobalSettings::getInstance().setBool("controllers.auto save.active", _on);
 }
 
 void _AutosaveController::shutdown()