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Releases: bioinfomaticsCSU/deepsignal

release v0.2.0

31 Mar 00:40
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make --reference_path not a required input in extract and call_mods module

handle gz file in call_freq script

release v0.1.10

22 Dec 09:02
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make sure results of each read be written together in call_mods' output

release v0.1.9

19 Nov 11:37
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enable multi-class (>=3) training/predicting,

fix bug of extrating contig name from fast5s

release v0.1.8

24 Sep 02:26
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release v0.1.8 Pre-release
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modify denoise module
fix success_file bug
update README

release v0.1.7

15 Jan 03:32
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release v0.1.7 Pre-release
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Prevent Queue.qsize() from raising NotImplementedError on Mac OS X (github: vterron/lemon@9ca6b4b)
covert raw signals to pA values before normalization in extract_feature module
add denoise module
add module-chosen options of model (rnn/base/cnn), re-train human model

release v0.1.6

20 Aug 03:28
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release v0.1.6 Pre-release
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add option –positions in extract_features module, add option/function of binary_format feature file to speed up training

release v0.1.5

23 Apr 13:48
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release v0.1.5 Pre-release
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normalize probs before output

release v0.1.4

04 Mar 18:36
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release v0.1.4 Pre-release
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change the loss function to weighted_cross_entropy_with_logits, allow training using unbalanced samples.

release v0.1.3

17 Jan 16:53
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release v0.1.3 Pre-release
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fix the deadlock issue in multiprocessing

release v0.1.2

15 Jan 23:21
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release v0.1.2 Pre-release
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this is for adding the missing MANIFEST.in file, no bugs fix or imporvements.