Update INSTALL.sh #156
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| name: mop2-CI | |
| # This workflow is triggered on pushes to the repository. | |
| on: [push] | |
| jobs: | |
| build: | |
| name: mop2 ci | |
| # This job runs on Linux | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| java_version: ['11.0.4'] | |
| steps: | |
| - name: Environment | |
| run: env | sort | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: Setup Java | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: ${{ matrix.java_version }} | |
| architecture: x64 | |
| - name: MOP2 | |
| run: | | |
| curl -fsSL get.nextflow.io | bash | |
| # Install Master Of Pores 2 | |
| git clone --depth 1 --recurse-submodules https://github.com/biocorecrg/MOP2.git | |
| cd MOP2 | |
| bash INSTALL.sh | |
| cd mop_preprocess | |
| ../../nextflow run mop_preprocess.nf -with-docker -profile ci | |
| cd ../mop_mod | |
| ../../nextflow run mop_mod.nf -with-docker -profile ci | |
| cd ../mop_tail | |
| ../../nextflow run mop_tail.nf -with-docker -profile ci | |
| env: | |
| NXF_ANSI_LOG: false |