Add TermURLs

bids-standard · Nov 3, 2023 · 694cec4 · 694cec4
1 parent 792ce7b
commit 694cec4
Show file tree

Hide file tree

Showing 11 changed files with 52 additions and 58 deletions.
diff --git a/7t_trt/participants.json b/7t_trt/participants.json
@@ -2,15 +2,15 @@
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   },

diff --git a/ds000117/participants.json b/ds000117/participants.json
@@ -2,21 +2,20 @@
   "age": {
     "LongName": "age",
     "Units": "year",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   },
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "Units": "TODO",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   },

diff --git a/ds008/participants.json b/ds008/participants.json
@@ -2,21 +2,21 @@
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   },
   "age": {
     "LongName": "age",
     "Units": "year",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   }
 }
diff --git a/ds009/participants.json b/ds009/participants.json
@@ -2,19 +2,19 @@
   "Age": {
     "LongName": "Age",
     "Units": "years",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   },
   "Gender": {
     "LongName": "Gender",
-    "TermURL": "TODO",
+    "TermURL": "https://schema.org/gender",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "https://schema.org/Female"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "https://schema.org/Male"
       }
     }
   }

diff --git a/ds101/participants.json b/ds101/participants.json
@@ -2,21 +2,21 @@
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   },
   "age": {
     "LongName": "age",
     "Units": "year",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   }
 }
diff --git a/ds102/participants.json b/ds102/participants.json
@@ -2,25 +2,25 @@
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "D": {
         "Description": "D",
         "TermURL": "TODO"
       },
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   },
   "age": {
     "LongName": "age",
     "Units": "year",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   }
 }
diff --git a/ds108/participants.json b/ds108/participants.json
@@ -2,21 +2,21 @@
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   },
   "age": {
     "LongName": "age",
     "Units": "year",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   }
 }
diff --git a/ds110/participants.json b/ds110/participants.json
@@ -2,21 +2,21 @@
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   },
   "age": {
     "LongName": "age",
     "Units": "year",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   }
 }
diff --git a/ds114/participants.json b/ds114/participants.json
@@ -1,16 +1,14 @@
 {
   "dominant_hand": {
-    "LongName": "dominant_hand",
-    "Description": "TODO",
-    "TermURL": "TODO",
+    "LongName": "dominant_hand"
     "Levels": {
       "left": {
         "Description": "left",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/87683000"
       },
       "right": {
         "Description": "right",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/46669005"
       }
     }
   }

diff --git a/ds116/participants.json b/ds116/participants.json
@@ -2,66 +2,63 @@
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   },
   "age": {
     "LongName": "age",
     "Units": "year",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   },
   "handedness": {
     "LongName": "handedness",
     "Description": "String value indicating handedness",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/57427004",
     "Levels": {
       "L": {
         "Description": "Left",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/87683000"
       },
       "R": {
         "Description": "Right",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.bioontology.org/ontology/SNOMEDCT/46669005"
       }
     }
   },
   "ethnicity": {
     "LongName": "ethnicity",
-    "Description": "TODO",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0004",
     "Levels": {
       "Asian": {
         "Description": "Asian",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0008"
       },
       "Asian/Caucasian": {
-        "Description": "Asian Caucasian",
-        "TermURL": "TODO"
+        "Description": "Asian Caucasian"
       },
       "Caucasian": {
         "Description": "Caucasian",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0005"
       },
       "Caucasian/African/NativeSouthAmerican": {
-        "Description": "Caucasian African NativeSouthAmerican",
-        "TermURL": "TODO"
+        "Description": "Caucasian African NativeSouthAmerican"
       },
       "Hispanic": {
         "Description": "Hispanic",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0014"
       },
       "MiddleEastern": {
         "Description": "MiddleEastern",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/HANCESTRO_0015"
       }
     }
   }

diff --git a/eeg_ds000117/participants.json b/eeg_ds000117/participants.json
@@ -2,20 +2,20 @@
   "age": {
     "LongName": "age",
     "Units": "year",
-    "TermURL": "TODO"
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0000011"
   },
   "sex": {
     "LongName": "sex",
     "Description": "String value indicating phenotypical sex.",
-    "TermURL": "TODO",
+    "TermURL": "http://purl.obolibrary.org/obo/PATO_0001894",
     "Levels": {
       "F": {
         "Description": "Female",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000383"
       },
       "M": {
         "Description": "Male",
-        "TermURL": "TODO"
+        "TermURL": "http://purl.obolibrary.org/obo/PATO_0000384"
       }
     }
   }