Emerged and disappeared unique mutation A4451G (K578E) in SARS-CoV-2 protein Nsp3 in Omsk, Russia from May to July 2020

This repository contains code and materials for the article.

Directory scripts

Working with aligned datasets and its metainformation.

• Final_version_flow.ipynb - preprocessing of aligned datasets and its metainformation (checking mutations frequency, uniqueness, etc) + draw cumulative flow diagram due to different classifications (this part need dict from good_mutations.py)
• sankey.ipynb - draw a Sankey plot for samples obtained from patients with a unique mutation K578E.