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Update README.md
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erinyoung committed Jun 20, 2023
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Expand Up @@ -75,7 +75,6 @@ Grandeur wouldn't be possible without the following tools:
- [fastani](https://github.com/ParBLiSS/FastANI) - species evaluator
- [fastp](https://github.com/OpenGene/fastp) - cleaning reads
- [fastqc](https://github.com/s-andrews/FastQC) - fastq file QC
- [fastq-scan](https://github.com/rpetit3/fastq-scan) - quality metrics for fastq files in json format
- [iqtree2](http://www.iqtree.org/) - phylogenetic tree creation - used after core genome alignment
- [kleborate](https://github.com/katholt/Kleborate) - Klebsiella serotyping
- [kraken2](https://ccb.jhu.edu/software/kraken2/) - contamination
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