attempted to add amrfinder columns

UPHL-BioNGS · Mar 13, 2024 · 1c08b25 · 1c08b25
1 parent 6e94f09
commit 1c08b25
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Showing 2 changed files with 9 additions and 9 deletions.
diff --git a/bin/for_multiqc.py b/bin/for_multiqc.py
@@ -351,14 +351,14 @@
     # line = line + "#         title: 'Reference sequence length'\n"
     # line = line + "#         description: 'Reference sequence length'\n"
     line = line + "#     Per Coverage of reference sequence:\n"
-    line = line + "#         title: '% Coverage of reference sequence'\n"
-    line = line + "#         description: '% Coverage of reference sequence'\n"
-    line = line + "#     Per Identity to reference sequence:\n"
-    line = line + "#         title: '% Identity to reference sequence'\n"
-    line = line + "#         description: '% Identity to reference sequence'\n"
-    line = line + "#     Alignment length:\n"
-    line = line + "#         title: 'Alignment length'\n"
-    line = line + "#         description: 'Alignment length'\n"
+    line = line + "#         title: 'Per Coverage'\n"
+    line = line + "#         description: 'Percent Coverage of reference sequence'\n"
+    line = line + "#     Per Identity:\n"
+    line = line + "#         title: 'Per Identity to reference sequence'\n"
+    line = line + "#         description: 'Percent Identity to reference sequence'\n"
+    # line = line + "#     Alignment length:\n"
+    # line = line + "#         title: 'Alignment length'\n"
+    # line = line + "#         description: 'Alignment length'\n"
     line = line + "#     Accession of closest sequence:\n"
     line = line + "#         title: 'Accession of closest sequence'\n"
     line = line + "#         description: 'Accession of closest sequence'\n"

diff --git a/bin/versions.py b/bin/versions.py
@@ -46,7 +46,7 @@ def _make_versions_html(versions):
             )
         html.append("</tbody>")
     html.append("</table>")
-    return "\\n".join(html)
+    return "\n".join(html)
 
 
 def main():