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@erinyoung erinyoung released this 09 May 18:41
· 14 commits to main since this release
1.6.20240510
e09c2a6
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GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Moderate release (no param changes)

  • There's a new summary file
    • donut_falls/summary/donut_falls.tsv now exists for those who need tsv files.
  • More information is found in the final json file (donut_falls/summary/donut_falls.json)
  • Introduces a mash dist step that ensure that Illumina and Nanopore reads are from the same isolate
    • The workflow will continue as if there were no Illumina reads if they are "too distant"
  • Updated busco image
  • Moved all images to use staphb's repository on dockerhub
  • Updated default of pypolca to --careful
  • Updated read type of flye to --nano-hq
  • Sorts consensus fasta files in donut_falls/sample/consensus from largest to smallest contig
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