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Unit testing scplainer (#59) #63

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merged 18 commits into from
Jul 9, 2024
Merged

Unit testing scplainer (#59) #63

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a5cf91f
test: started unit testing the ScpModel Class
cvanderaa Apr 2, 2024
bf993ca
test: progressed on testing the ScpModel Class
cvanderaa Apr 8, 2024
4856df1
Solved conflict
cvanderaa Apr 17, 2024
cd31284
test: progressed on unit testing ScpModel class
cvanderaa Apr 24, 2024
89125cc
test: finished testing ScpModel-Class
cvanderaa Apr 25, 2024
80a89f3
Merge branch 'master' into issue59
cvanderaa Apr 26, 2024
c5b9638
test: added tests for ScpModelFit functions
cvanderaa Apr 26, 2024
1693259
test: started testing ScpModel-Workflow
cvanderaa Apr 26, 2024
3292d41
test: progressed on unit testing ScpModelWorkflow
cvanderaa May 3, 2024
0291bbe
erge branch 'master' into issue59
cvanderaa May 3, 2024
46a74c1
test: finished unit testing ScpModelWorkflow
cvanderaa May 14, 2024
ade7cd9
test: finished unit testing ScpModel-Utils
cvanderaa May 21, 2024
5f70a47
test: finished unit testing ScpModel_VarianceAnalysis
cvanderaa May 23, 2024
012b5f1
test: finished unit testing ScpModel-DifferentialAnalysis
cvanderaa May 31, 2024
061e28c
test: finished testing scpComponentAnalysis()
cvanderaa Jun 7, 2024
fa4567b
test: run tests locally with small bug fixes
cvanderaa Jun 7, 2024
5257770
fix: small unit test fixes
cvanderaa Jun 10, 2024
026c233
fix: additional minor fixes
cvanderaa Jun 10, 2024
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3 changes: 2 additions & 1 deletion DESCRIPTION
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Expand Up @@ -22,7 +22,6 @@ Depends:
R (>= 4.3.0),
QFeatures (>= 1.13.5)
Imports:
dplyr,
IHW,
ggplot2,
ggrepel,
Expand All @@ -40,6 +39,7 @@ Imports:
utils
Suggests:
BiocStyle,
BiocGenerics,
MsDataHub (>= 1.3.3),
impute,
knitr,
Expand All @@ -50,6 +50,7 @@ Suggests:
scpdata,
sva,
testthat,
vdiffr,
vsn,
uwot
License: Artistic-2.0
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2 changes: 0 additions & 2 deletions NAMESPACE
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Expand Up @@ -66,8 +66,6 @@ importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(dplyr,group_by)
importFrom(dplyr,summarise)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(matrixStats,colMedians)
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9 changes: 5 additions & 4 deletions NEWS.md
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@@ -1,5 +1,10 @@
## scp 1.15

## scp 1.15.1

- test: added unit tests for scplainer: ScpModel-Class,
scpModelFit-Class, ScpModel-Workflow

## scp 1.15.0

- New Bioconductor 3.20 (devel) release
Expand All @@ -12,10 +17,6 @@

# scp 1.13

## scp 1.13.6

(nothing yet)

## scp 1.13.5

- fix: fixed small error in degrees of freedom
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