Feature/rm core dependency cli

[emrgnt-cmplxty]

🚀	This description was created by Ellipsis for commit b6d139d

Summary:

This PR removes the core dependency from the CLI by modifying run_docker_serve in py/cli/utils/docker_utils.py, updates pyproject.toml to version 0.3.01, adds python-dotenv, and corrects a link in py/README.md.

Key points:

• Removed client parameter from run_docker_serve in py/cli/utils/docker_utils.py.
• Removed R2RConfig and R2RBuilder dependencies from run_docker_serve.
• Updated pyproject.toml to version 0.3.01.
• Added python-dotenv dependency in pyproject.toml.
• Fixed link description in py/README.md for Group Permissions.

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[ellipsis-dev]

👍 Looks good to me! Reviewed everything up to b6d139d in 13 seconds

More details

• Looked at 118 lines of code in 5 files
• Skipped 1 files when reviewing.
• Skipped posting 2 drafted comments based on config settings.

1. py/pyproject.toml:8

• Draft comment:
  The version number '0.3.01' is incorrectly formatted. Consider using '0.3.1' to follow semantic versioning.
• Reason this comment was not posted:
  Confidence changes required: 50%
  The version number in the pyproject.toml file is incorrectly formatted. It should follow semantic versioning, which typically uses three numbers separated by dots, e.g., '0.3.1'.

2. py/sdk/models.py:550

• Draft comment:
  Add a newline at the end of the file for better compatibility with various tools and editors.
• Reason this comment was not posted:
  Confidence changes required: 10%
  The newline at the end of the file is missing in sdk/models.py. This is a minor issue but it's a good practice to have a newline at the end of files.

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