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use docker image repronim/neurodocker:0.7.0
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kaczmarj committed Apr 15, 2020
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# Neurodocker

[![build status](https://img.shields.io/circleci/project/github/ReproNim/neurodocker/master.svg)](https://circleci.com/gh/ReproNim/neurodocker/tree/master)
[![docker pulls](https://img.shields.io/docker/pulls/kaczmarj/neurodocker.svg)](https://hub.docker.com/r/kaczmarj/neurodocker/)
[![docker pulls](https://img.shields.io/docker/pulls/kaczmarj/neurodocker.svg)](https://hub.docker.com/r/repronim/neurodocker/)
[![python versions](https://img.shields.io/pypi/pyversions/neurodocker.svg)](https://pypi.org/project/neurodocker/)

_Neurodocker_ is a command-line program that generates custom Dockerfiles and Singularity recipes for neuroimaging and minifies existing containers.
Expand All @@ -20,9 +20,11 @@ _Neurodocker_ is a command-line program that generates custom Dockerfiles and Si
Use the _Neurodocker_ Docker image (recommended):

```shell
docker run --rm kaczmarj/neurodocker:0.6.0 --help
docker run --rm repronim/neurodocker:0.7.0 --help
```

The Docker images were recently moved to [repronim/neurodocker](https://hub.docker.com/r/repronim/neurodocker) from [kaczmarj/neurodocker](https://hub.docker.com/r/kaczmarj/neurodocker).

_Note_: Do not use the `-t/--tty` flag with `docker run` or non-printable characters will be a part of the output (see [moby/moby#8513 (comment)](https://github.com/moby/moby/issues/8513#issuecomment-216191236)).

This project can also be installed with `pip`:
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### Docker

```shell
docker run --rm kaczmarj/neurodocker:0.6.0 generate docker \
docker run --rm repronim/neurodocker:0.7.0 generate docker \
--base debian:stretch --pkg-manager apt --ants version=2.3.1

# Build image by piping Dockerfile to `docker build`
docker run --rm kaczmarj/neurodocker:0.6.0 generate docker \
docker run --rm repronim/neurodocker:0.7.0 generate docker \
--base debian:stretch --pkg-manager apt --ants version=2.3.1 | docker build -
```

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Install ANTs on Debian 9 (Stretch).

```shell
docker run --rm kaczmarj/neurodocker:0.6.0 generate singularity \
docker run --rm repronim/neurodocker:0.7.0 generate singularity \
--base debian:stretch --pkg-manager apt --ants version=2.3.1
```

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