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Add GDS tutorial #1450

Merged
merged 10 commits into from
Jul 14, 2023
Merged

Add GDS tutorial #1450

merged 10 commits into from
Jul 14, 2023

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KumoLiu
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@KumoLiu KumoLiu commented Jul 10, 2023

Fixes Project-MONAI/MONAI#6231

Description

Add GDS tutorial, contains:

  • How to enable GDS
  • GDSDataset
  • Simple demo show the result(may also add the end-to-end results)

Checks

  • Avoid including large-size files in the PR.
  • Clean up long text outputs from code cells in the notebook.
  • For security purposes, please check the contents and remove any sensitive info such as user names and private key.
  • Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
  • Notebook runs automatically ./runner.sh -t <path to .ipynb file>

Signed-off-by: KumoLiu <[email protected]>
Signed-off-by: KumoLiu <[email protected]>
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@KumoLiu KumoLiu marked this pull request as ready for review July 14, 2023 16:33
@KumoLiu KumoLiu changed the title [WIP] Add GDS tutorial Add GDS tutorial Jul 14, 2023
@KumoLiu KumoLiu requested review from wyli and Nic-Ma July 14, 2023 16:35
Signed-off-by: KumoLiu <[email protected]>
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@wyli wyli left a comment

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Thanks, it looks good to me.

@wyli wyli merged commit d4dcf82 into Project-MONAI:main Jul 14, 2023
5 checks passed
@KumoLiu KumoLiu deleted the gds_tutorial branch July 16, 2023 15:26
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
Fixes Project-MONAI/MONAI#6231

### Description
Add GDS tutorial, contains:
- How to enable GDS
- GDSDataset
- Simple demo show the result(may also add the end-to-end results)

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [ ] Avoid including large-size files in the PR.
- [ ] Clean up long text outputs from code cells in the notebook.
- [ ] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`

---------

Signed-off-by: KumoLiu <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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investigate feasibility of kvikio CuFile <> monai.data.PersistentDataset
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