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[pre-commit.ci] auto fixes from pre-commit.com hooks
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pre-commit-ci[bot] committed Jun 20, 2023
1 parent 3669897 commit d63ad45
Showing 1 changed file with 6 additions and 8 deletions.
14 changes: 6 additions & 8 deletions patch_inferer/modular_patch_inferer.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -363,7 +363,7 @@
" WSI_PATH_LIST.append(path)\n",
"\n",
"# WSI Reader backend\n",
"WSI_BACKEND=\"cucim\"\n",
"WSI_BACKEND = \"cucim\"\n",
"\n",
"# The level at which image should be loaded\n",
"WSI_LEVEL = 6\n",
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"outputs": [],
"source": [
"inferer = PatchInferer(\n",
" splitter=WSISlidingWindowSplitter(\n",
" patch_size=patch_size, pad_mode=\"constant\", reader=WSI_BACKEND, level=WSI_LEVEL\n",
" ),\n",
" merger_cls=merger,\n",
" match_spatial_shape=True,\n",
" output_dtype=\"int8\",\n",
" )\n",
" splitter=WSISlidingWindowSplitter(patch_size=patch_size, pad_mode=\"constant\", reader=WSI_BACKEND, level=WSI_LEVEL),\n",
" merger_cls=merger,\n",
" match_spatial_shape=True,\n",
" output_dtype=\"int8\",\n",
")\n",
"zimg = run_inference(inferer, network_random_brightness, WSI_PATH_LIST)"
]
},
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