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Zarr Merger #6633

Merged
merged 24 commits into from
Jun 28, 2023
Merged

Zarr Merger #6633

merged 24 commits into from
Jun 28, 2023

Commits on Jun 26, 2023

  1. add zarr dependency 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  2. Implement ZarrAvgMerger 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci @drbeh
    pre-commit-ci[bot] authored and drbeh committed Jun 26, 2023
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  4. update docs 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  5. update docs 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  6. update docstring 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  7. add info about Zarr in docstring 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  8. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci @drbeh
    pre-commit-ci[bot] authored and drbeh committed Jun 26, 2023
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  9. add unit tests 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  10. exclude zarr tests from min tests 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  11. add thread locks 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  12. remove compression for temp zarr arrays 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  13. add flexibility to define compressors for all zarr arrays 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  14. change to skip unless 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 26, 2023
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  15. Merge branch 'dev' of https://github.com/Project-MONAI/MONAI into zar… 

    …r-mergers
    @drbeh
    drbeh committed Jun 26, 2023
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Commits on Jun 27, 2023

  1. Merge branch 'dev' into zarr-mergers

    @drbeh
    drbeh committed Jun 27, 2023
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Commits on Jun 28, 2023

  1. Merge branch 'zarr-mergers' of https://github.com/drbeh/MONAI into za… 

    …rr-mergers
    @drbeh
    drbeh committed Jun 28, 2023
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  2. make thread locking optional 

    Signed-off-by: Behrooz <[email protected]>
    @drbeh
    drbeh committed Jun 28, 2023
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  3. Merge branch 'dev' into zarr-mergers

    @drbeh
    drbeh committed Jun 28, 2023
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  4. Update monai/inferers/merger.py 

    Co-authored-by: Eric Kerfoot <[email protected]>
Signed-off-by: Dr. Behrooz Hashemian <[email protected]>
    @drbeh @ericspod
    drbeh and ericspod committed Jun 28, 2023
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  5. Update monai/inferers/merger.py 

    Co-authored-by: Eric Kerfoot <[email protected]>
Signed-off-by: Dr. Behrooz Hashemian <[email protected]>
    @drbeh @ericspod
    drbeh and ericspod committed Jun 28, 2023
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  6. Update monai/inferers/merger.py 

    Co-authored-by: Eric Kerfoot <[email protected]>
Signed-off-by: Dr. Behrooz Hashemian <[email protected]>
    @drbeh @ericspod
    drbeh and ericspod committed Jun 28, 2023
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  7. Merge branch 'dev' into zarr-mergers

    @drbeh
    drbeh committed Jun 28, 2023
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  8. unblock premerge download test 

    Signed-off-by: Wenqi Li <[email protected]>
    @wyli
    wyli committed Jun 28, 2023
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