A tool to extract variants of pharmacogenomic interest from a genetic dataset (represented as a VCF file), interpret the variant alleles, match to defined named alleles, find related prescribing guidance, and generate reports in various formats.
For more details:
- Go to PharmCAT website
- Read the PharmGKB blog post about PharmCAT
- Read the article on GenomeWeb
PharmCAT is available for general use, but it is still under active development. New features, data updates, and bug fixes will be released. Watch this repository or check the releases page for new releases.
All technical requirements and documentation are available on PharmCAT.org.
PharmCAT is managed at Stanford University & University of Pennsylvania (NHGRI U24HG013077).
For technical questions or bug reports, file an issue.
For general questions about the PharmCAT project, contact [email protected].