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Update README.md
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sfchen committed Oct 30, 2018
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Expand Up @@ -139,7 +139,6 @@ options:
--moderate_qual the threshold for a quality score to be considered as moderate quality. Default 20 means Q20. (int [=20])
--low_qual the threshold for a quality score to be considered as low quality. Default 15 means Q15. (int [=15])
-j, --json the json format report file name (string [=gencore.json])
-h, --html the html format report file name (string [=gencore.html])
--debug output some debug information to STDERR.
--quit_after_contig stop when <quit_after_contig> contigs are processed. Only used for fast debugging. Default 0 means no limitation. (int [=0])
-?, --help print this message
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