Merge branch 'master' into publications-link-descr

OBOFoundry · Sep 3, 2024 · 451e0ed · 451e0ed
2 parents 515bdb0 + 8d779fc
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diff --git a/_config.yml b/_config.yml
@@ -2334,9 +2334,9 @@ ontologies:
   id: foodon
   layout: ontology_detail
   license:
-    label: CC BY 3.0
+    label: CC BY 4.0
     logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
-    url: http://creativecommons.org/licenses/by/3.0/
+    url: http://creativecommons.org/licenses/by/4.0/
   ontology_purl: http://purl.obolibrary.org/obo/foodon.owl
   preferredPrefix: FOODON
   products:
@@ -2357,6 +2357,27 @@ ontologies:
   - food
   title: Food Ontology
   tracker: https://github.com/FoodOntology/foodon/issues/
+  usages:
+  - description: FoodData Central nutrition database web portal provided by USDA Agricultural
+      Research Service.
+    examples:
+    - description: An entry for 'Apples, fuji, with skin, raw' from the FoodData Central
+        nutrition database which is annotated with the term FOODON:00002862.
+      url: https://fdc.nal.usda.gov/fdc-app.html#/food-details/1750340/attributes
+    user: https://fdc.nal.usda.gov/
+  - description: FDA GenomeTrackr surveillance program for reporting foodborne pathogen
+      biosamples.
+    examples:
+    - description: An entry from NCBI Biosample that describes a *Samonella enterica*
+        sample extracted from Chicken and annotated with the term FOODON:03411457.
+      url: https://www.ncbi.nlm.nih.gov/biosample/SAMN03455272
+    user: https://www.fda.gov/food/whole-genome-sequencing-wgs-program/genometrakr-network
+  - description: Wiki database consolidating over 30 global food composition databases.
+    examples:
+    - description: An entry from WikiFCD that describes Walnuts and is annotated with
+        the term FOODON:03301364.
+      url: https://wikifcd.wikibase.cloud/wiki/Item:Q568877
+    user: https://wikifcd.wikibase.cloud/wiki/Main_Page
 - activity_status: active
   contact:
     email: [email protected]

diff --git a/ontology/foodon.md b/ontology/foodon.md
@@ -20,8 +20,8 @@ description: A broadly scoped ontology representing entities which bear a “foo
 domain: diet, metabolomics, and nutrition
 homepage: https://foodon.org/
 license:
-  label: CC BY 3.0
-  url: http://creativecommons.org/licenses/by/3.0/
+  label: CC BY 4.0
+  url: http://creativecommons.org/licenses/by/4.0/
 preferredPrefix: FOODON
 products:
 - id: foodon.owl
@@ -37,6 +37,22 @@ repository: https://github.com/FoodOntology/foodon
 tags:
 - food
 tracker: https://github.com/FoodOntology/foodon/issues/
+usages:
+- description: FoodData Central nutrition database web portal provided by USDA Agricultural Research Service.
+  examples:
+  - description: An entry for 'Apples, fuji, with skin, raw' from the FoodData Central nutrition database which is annotated with the term FOODON:00002862.
+    url: https://fdc.nal.usda.gov/fdc-app.html#/food-details/1750340/attributes
+  user: https://fdc.nal.usda.gov/
+- description: FDA GenomeTrackr surveillance program for reporting foodborne pathogen biosamples.
+  examples:
+  - description: An entry from NCBI Biosample that describes a *Samonella enterica* sample extracted from Chicken and annotated with the term FOODON:03411457.
+    url: https://www.ncbi.nlm.nih.gov/biosample/SAMN03455272
+  user: https://www.fda.gov/food/whole-genome-sequencing-wgs-program/genometrakr-network
+- description: Wiki database consolidating over 30 global food composition databases.
+  examples:
+  - description: An entry from WikiFCD that describes Walnuts and is annotated with the term FOODON:03301364.
+    url: https://wikifcd.wikibase.cloud/wiki/Item:Q568877
+  user: https://wikifcd.wikibase.cloud/wiki/Main_Page
 activity_status: active
 ---
 

diff --git a/registry/ontologies.jsonld b/registry/ontologies.jsonld
@@ -3283,9 +3283,9 @@
             "id": "foodon",
             "layout": "ontology_detail",
             "license": {
-                "label": "CC BY 3.0",
+                "label": "CC BY 4.0",
                 "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
-                "url": "http://creativecommons.org/licenses/by/3.0/"
+                "url": "http://creativecommons.org/licenses/by/4.0/"
             },
             "ontology_purl": "http://purl.obolibrary.org/obo/foodon.owl",
             "preferredPrefix": "FOODON",
@@ -3314,7 +3314,39 @@
                 "food"
             ],
             "title": "Food Ontology",
-            "tracker": "https://github.com/FoodOntology/foodon/issues/"
+            "tracker": "https://github.com/FoodOntology/foodon/issues/",
+            "usages": [
+                {
+                    "description": "FoodData Central nutrition database web portal provided by USDA Agricultural Research Service.",
+                    "examples": [
+                        {
+                            "description": "An entry for 'Apples, fuji, with skin, raw' from the FoodData Central nutrition database which is annotated with the term FOODON:00002862.",
+                            "url": "https://fdc.nal.usda.gov/fdc-app.html#/food-details/1750340/attributes"
+                        }
+                    ],
+                    "user": "https://fdc.nal.usda.gov/"
+                },
+                {
+                    "description": "FDA GenomeTrackr surveillance program for reporting foodborne pathogen biosamples.",
+                    "examples": [
+                        {
+                            "description": "An entry from NCBI Biosample that describes a *Samonella enterica* sample extracted from Chicken and annotated with the term FOODON:03411457.",
+                            "url": "https://www.ncbi.nlm.nih.gov/biosample/SAMN03455272"
+                        }
+                    ],
+                    "user": "https://www.fda.gov/food/whole-genome-sequencing-wgs-program/genometrakr-network"
+                },
+                {
+                    "description": "Wiki database consolidating over 30 global food composition databases.",
+                    "examples": [
+                        {
+                            "description": "An entry from WikiFCD that describes Walnuts and is annotated with the term FOODON:03301364.",
+                            "url": "https://wikifcd.wikibase.cloud/wiki/Item:Q568877"
+                        }
+                    ],
+                    "user": "https://wikifcd.wikibase.cloud/wiki/Main_Page"
+                }
+            ]
         },
         {
             "activity_status": "active",