Minor repo fixes (#560)

.github/workflows/codespell.yml

@@ -14,6 +14,6 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
       - name: Codespell
-        uses: codespell-project/actions-codespell@v1
+        uses: codespell-project/actions-codespell@v2

.github/workflows/validate_schema.yml

@@ -8,11 +8,11 @@ jobs:
     if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python 3.10
+    - uses: actions/checkout@v4
+    - name: Set up Python 3.12
       uses: actions/setup-python@v4
       with:
-        python-version: "3.10"
+        python-version: "3.12"
     - name: Install dev branch of HDMF
       run: |
         pip install git+https://github.com/hdmf-dev/hdmf.git

.gitignore

@@ -5,9 +5,7 @@ __pycache__/
 
 # Sphinx documentation
 docs/format/_build/
-docs/language/_build/
 docs/storage/_build/
-docs/general/_build
 
 # Autogenerated Sphinx sources
 docs/format/source/_format_auto_docs/
@@ -17,3 +15,5 @@ docs/format/source/_format_auto_docs/
 
 #PyCharm
 .idea/
+
+.DS_Store

core/nwb.file.yaml

@@ -7,7 +7,7 @@ groups:
   attributes:
   - name: nwb_version
     dtype: text
-    value: "2.6.0"
+    value: "2.7.0-alpha"
     doc: File version string. Use semantic versioning, e.g. 1.2.1. This will be the
       name of the format with trailing major, minor and patch numbers.
   datasets:

core/nwb.namespace.yaml

@@ -57,4 +57,4 @@ namespaces:
   - doc: This source module contains neurodata_type for retinotopy data.
     source: nwb.retinotopy.yaml
     title: Retinotopy
-  version: "2.6.0-alpha"
+  version: "2.7.0-alpha"

core/nwb.ophys.yaml

@@ -340,12 +340,12 @@ groups:
     each point in time is assumed to be 2-D (has only x & y dimensions).'
   groups:
   - neurodata_type_inc: CorrectedImageStack
-    doc: Reuslts from motion correction of an image stack.
+    doc: Results from motion correction of an image stack.
     quantity: '+'
 
 - neurodata_type_def: CorrectedImageStack
   neurodata_type_inc: NWBDataInterface
-  doc: Reuslts from motion correction of an image stack.
+  doc: Results from motion correction of an image stack.
   groups:
   - name: corrected
     neurodata_type_inc: ImageSeries

docs/format/.readthedocs.yaml

@@ -0,0 +1,27 @@
+# Read the Docs configuration file for https://nwb-schema.readthedocs.io/
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.12"
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: docs/format/source/conf.py
+
+# Optionally build your docs in additional formats such as PDF and ePub
+formats: all
+
+# Optionally set the version of Python and requirements required to build your docs
+python:
+  install:
+    - requirements: requirements-doc.txt
+
+# Optionally include all submodules
+submodules:
+  include: all
+  recursive: true

docs/format/source/conf.py

@@ -83,9 +83,9 @@ def setup(app):
 # built documents.
 #
 # The short X.Y version.
-version = '2.6.0'
+version = '2.7.0'
 # The full version, including alpha/beta/rc tags.
-release = '2.6.0'
+release = '2.7.0-alpha'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

docs/format/source/format_release_notes.rst

@@ -3,6 +3,12 @@
 Release Notes
 =============
 
+2.7.0 (Upcoming)
+----------------
+
+Minor changes
+^^^^^^^^^^^^^
+- Fixed typos in docstrings. (#560)
 
 2.6.0 (January 17, 2023)
 -----------------------

requirements-doc.txt

@@ -1,2 +1,3 @@
 hdmf-docutils
 pynwb
+matplotlib