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NOAA-FIMS · Jun 4, 2024 · b180c65 · b180c65
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commit b180c65
Showing 1 changed file with 25 additions and 24 deletions.
diff --git a/docs/rcpp__recruitment_8hpp_source.html b/docs/rcpp__recruitment_8hpp_source.html
@@ -209,30 +209,31 @@
 <div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;        info-&gt;RegisterParameter(recruitment-&gt;log_recruit_devs[i]);</div>
 <div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;      }</div>
 <div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;    } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;      <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i &lt; recruitment-&gt;log_recruit_devs.size(); i++) {</div>
-<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;        recruitment-&gt;log_recruit_devs[i] = this-&gt;log_devs[i];</div>
-<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;      }</div>
-<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;    }</div>
-<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160; </div>
-<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;    <span class="comment">// add to Information</span></div>
-<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;    info-&gt;recruitment_models[recruitment-&gt;id] = recruitment;</div>
-<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160; </div>
-<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
-<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;  }</div>
-<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160; </div>
-<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;  <span class="keyword">virtual</span> <span class="keywordtype">bool</span> <a class="code" href="classFIMSRcppInterfaceBase.html#a9183d9379777d8be70ab66af1a07f94c">add_to_fims_tmb</a>() {</div>
-<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;    this-&gt;add_to_fims_tmb_internal&lt;TMB_FIMS_REAL_TYPE&gt;();</div>
-<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;    this-&gt;add_to_fims_tmb_internal&lt;TMB_FIMS_FIRST_ORDER&gt;();</div>
-<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;    this-&gt;add_to_fims_tmb_internal&lt;TMB_FIMS_SECOND_ORDER&gt;();</div>
-<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;    this-&gt;add_to_fims_tmb_internal&lt;TMB_FIMS_THIRD_ORDER&gt;();</div>
-<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160; </div>
-<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;    <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
-<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;  }</div>
-<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160; </div>
-<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;};</div>
-<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160; </div>
-<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;      recruitment-&gt;estimate_log_recruit_devs = <a class="code" href="classBevertonHoltRecruitmentInterface.html#afe2980ec7c59a65a74d9d94ff47a6d41">estimate_log_devs</a>;</div>
+<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;      <span class="keywordflow">for</span> (<span class="keywordtype">size_t</span> i = 0; i &lt; recruitment-&gt;log_recruit_devs.size(); i++) {</div>
+<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;        recruitment-&gt;log_recruit_devs[i] = this-&gt;log_devs[i];</div>
+<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;      }</div>
+<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    }</div>
+<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160; </div>
+<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;    <span class="comment">// add to Information</span></div>
+<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;    info-&gt;recruitment_models[recruitment-&gt;id] = recruitment;</div>
+<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160; </div>
+<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;    <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;  }</div>
+<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160; </div>
+<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;  <span class="keyword">virtual</span> <span class="keywordtype">bool</span> <a class="code" href="classFIMSRcppInterfaceBase.html#a9183d9379777d8be70ab66af1a07f94c">add_to_fims_tmb</a>() {</div>
+<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;    this-&gt;add_to_fims_tmb_internal&lt;TMB_FIMS_REAL_TYPE&gt;();</div>
+<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;    this-&gt;add_to_fims_tmb_internal&lt;TMB_FIMS_FIRST_ORDER&gt;();</div>
+<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;    this-&gt;add_to_fims_tmb_internal&lt;TMB_FIMS_SECOND_ORDER&gt;();</div>
+<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    this-&gt;add_to_fims_tmb_internal&lt;TMB_FIMS_THIRD_ORDER&gt;();</div>
+<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160; </div>
+<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    <span class="keywordflow">return</span> <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;  }</div>
+<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160; </div>
+<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;};</div>
+<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160; </div>
+<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;<span class="preprocessor">#endif</span></div>
 <div class="ttc" id="aclassBevertonHoltRecruitmentInterface_html"><div class="ttname"><a href="classBevertonHoltRecruitmentInterface.html">BevertonHoltRecruitmentInterface</a></div><div class="ttdoc">Rcpp interface for Beverton-Holt as an S4 object. To instantiate from R: beverton_holt &lt;- new(beverto...</div><div class="ttdef"><b>Definition:</b> rcpp_recruitment.hpp:71</div></div>
 <div class="ttc" id="aclassBevertonHoltRecruitmentInterface_html_a0c22b325e9d6afa6d9d1ccf140a75ad1"><div class="ttname"><a href="classBevertonHoltRecruitmentInterface.html#a0c22b325e9d6afa6d9d1ccf140a75ad1">BevertonHoltRecruitmentInterface::evaluate_nll</a></div><div class="ttdeci">virtual double evaluate_nll()</div><div class="ttdoc">evaluate recruitment nll</div><div class="ttdef"><b>Definition:</b> rcpp_recruitment.hpp:101</div></div>
 <div class="ttc" id="aclassBevertonHoltRecruitmentInterface_html_a1d3c3a96a3ff9a872aeeb57e343e1073"><div class="ttname"><a href="classBevertonHoltRecruitmentInterface.html#a1d3c3a96a3ff9a872aeeb57e343e1073">BevertonHoltRecruitmentInterface::logit_steep</a></div><div class="ttdeci">Parameter logit_steep</div><div class="ttdef"><b>Definition:</b> rcpp_recruitment.hpp:73</div></div>