update things for py312

MDAnalysis · Oct 27, 2023 · ebce8b8 · ebce8b8
1 parent 03a9550
commit ebce8b8
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Showing 7 changed files with 41 additions and 38 deletions.
diff --git a/.github/workflows/darkerbot.yaml b/.github/workflows/darkerbot.yaml
@@ -21,7 +21,7 @@ jobs:
     runs-on: ubuntu-latest
     timeout-minutes: 5
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: actions/setup-python@v4
         with:

diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml
@@ -37,31 +37,32 @@ jobs:
       fail-fast: false
       matrix:
         buildplat:
-          - [ubuntu-20.04, manylinux_x86_64]
-          - [macos-11, macosx_*]
-          - [windows-2019, win_amd64]
-        python: ["cp39", "cp310", "cp311"]
+          - [ubuntu-22.04, manylinux_x86_64, x86_64]
+          - [macos-11, macosx_*, x86_64]
+          - [windows-2019, win_amd64, AMD64]
+        python: ["cp39", "cp310", "cp311", "cp312"]
     defaults:
       run:
         working-directory: ./package
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.11.2
+        uses: pypa/cibuildwheel@v2.16.2
         with:
           package-dir: package
         env:
           CIBW_BUILD: ${{ matrix.python }}-${{ matrix.buildplat[1] }}
+          CIBW_ARCHS: ${{ matrix.buildplat[2] }}
           CIBW_BUILD_VERBOSITY: 1
 
       - name: upload artifacts
         if: |
           (github.event_name == 'push' && startsWith(github.ref, 'refs/tags/package')) ||
           (github.event_name == 'release' && github.event.action == 'published')
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         with:
           path: wheelhouse/*.whl
           retention-days: 7
@@ -75,7 +76,7 @@ jobs:
       run:
         working-directory: ./package
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -86,7 +87,7 @@ jobs:
         if: |
           (github.event_name == 'push' && startsWith(github.ref, 'refs/tags/package')) ||
           (github.event_name == 'release' && github.event.action == 'published')
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         with:
           path: package/dist/*.tar.gz
           retention-days: 7
@@ -100,7 +101,7 @@ jobs:
       run:
         working-directory: ./testsuite
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -111,7 +112,7 @@ jobs:
         if: |
           (github.event_name == 'push' && startsWith(github.ref, 'refs/tags/package')) ||
           (github.event_name == 'release' && github.event.action == 'published')
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         with:
           path: testsuite/dist/*.tar.gz
           retention-days: 7
@@ -125,7 +126,7 @@ jobs:
     runs-on: ubuntu-latest
     needs: [build_wheels, build_sdist, build_sdist_tests]
     steps:
-      - uses: actions/download-artifact@v2
+      - uses: actions/download-artifact@v3
         with:
           name: artifact
           path: dist
@@ -136,15 +137,15 @@ jobs:
           mv dist/MDAnalysisTests-* testsuite/dist
 
       - name: upload_source_and_wheels
-        uses: pypa/gh-action-pypi-publish@v1.5.0
+        uses: pypa/gh-action-pypi-publish@v1.8.10
         with:
           user: __token__
           password: ${{ secrets.TESTPYPI_API_TOKEN_SRC }}
           skip_existing: true
           repository_url: https://test.pypi.org/legacy/
 
       - name: upload_tests
-        uses: pypa/gh-action-pypi-publish@v1.5.0
+        uses: pypa/gh-action-pypi-publish@v1.8.10
         with:
           user: __token__
           password: ${{ secrets.TESTPYPI_API_TOKEN_TEST }}
@@ -161,7 +162,7 @@ jobs:
     runs-on: ubuntu-latest
     needs: [build_wheels, build_sdist, build_sdist_tests]
     steps:
-      - uses: actions/download-artifact@v2
+      - uses: actions/download-artifact@v3
         with:
           name: artifact
           path: dist
@@ -172,13 +173,13 @@ jobs:
           mv dist/MDAnalysisTests-* testsuite/dist
 
       - name: upload_source_and_wheels
-        uses: pypa/gh-action-pypi-publish@v1.5.0
+        uses: pypa/gh-action-pypi-publish@v1.18.10
         with:
           user: __token__
           password: ${{ secrets.PYPI_API_TOKEN_SRC }}
 
       - name: upload_tests
-        uses: pypa/gh-action-pypi-publish@v1.5.0
+        uses: pypa/gh-action-pypi-publish@v1.18.10
         with:
           user: __token__
           password: ${{ secrets.PYPI_API_TOKEN_TEST }}
@@ -196,7 +197,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.9", "3.10", "3.11"]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
         type: ["FULL", "MIN"]
         exclude:
           # Multiple deps don't like windows
@@ -206,7 +207,7 @@ jobs:
       MPLBACKEND: agg
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: setup_micromamba
         uses: mamba-org/setup-micromamba@v1

diff --git a/.github/workflows/gh-ci-cron.yaml b/.github/workflows/gh-ci-cron.yaml
@@ -26,7 +26,7 @@ jobs:
     timeout-minutes: 60
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: setup_os
       uses: ./.github/actions/setup-os
@@ -85,7 +85,7 @@ jobs:
     timeout-minutes: 60
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: setup_os
       uses: ./.github/actions/setup-os
@@ -138,7 +138,7 @@ jobs:
         os: [ubuntu-20.04, macos-11]
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: setup_os
       uses: ./.github/actions/setup-os
@@ -186,7 +186,7 @@ jobs:
         matrix:
           python-version: ["3.10", "3.11", "3.12"]
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: setup_os
       uses: ./.github/actions/setup-os
@@ -225,7 +225,7 @@ jobs:
           os: [ubuntu, macos]
           python-version: ["3.9", "3.10", "3.11"]
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: setup_os
       uses: ./.github/actions/setup-os
@@ -273,7 +273,7 @@ jobs:
           wheels: ['true', 'false']
     steps:
       # Checkout to have access to local actions (i.e. setup-os)
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
       # We need this here in order to make sure we assign the correct compiler (i.e. clang for macos)
     - name: setup_os

diff --git a/.github/workflows/gh-ci.yaml b/.github/workflows/gh-ci.yaml
@@ -58,7 +58,7 @@ jobs:
       MPLBACKEND: agg
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: setup_os
       uses: ./.github/actions/setup-os
@@ -139,7 +139,7 @@ jobs:
       MPLBACKEND: agg
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: setup_micromamba
       uses: mamba-org/setup-micromamba@v1
@@ -237,7 +237,7 @@ jobs:
     timeout-minutes: 30
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - uses: actions/setup-python@v4
       with:

diff --git a/.github/workflows/linters.yaml b/.github/workflows/linters.yaml
@@ -27,7 +27,7 @@ jobs:
         shell: bash
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
       with:
         fetch-depth: 0
 
@@ -102,7 +102,7 @@ jobs:
     runs-on: ubuntu-latest
     timeout-minutes: 10
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - uses: actions/setup-python@v4
       with:
@@ -124,7 +124,7 @@ jobs:
     runs-on: ubuntu-latest
     timeout-minutes: 10
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: setup_micromamba
         uses: mamba-org/setup-micromamba@v1

diff --git a/maintainer/ci/cirrus-ci.yml b/maintainer/ci/cirrus-ci.yml
@@ -20,9 +20,9 @@ macos_arm64_task:
 
   ci_script: |
     brew update
-    brew install python@3.11
-    /opt/homebrew/bin/python3 -m venv ~/py_311
-    source ~/py_311/bin/activate
+    brew install python@3.12
+    /opt/homebrew/bin/python3 -m venv ~/py_312
+    source ~/py_312/bin/activate
     cd package
     python -m pip install .
     cd ../testsuite

diff --git a/maintainer/ci/cirrus-deploy.yml b/maintainer/ci/cirrus-deploy.yml
@@ -1,6 +1,6 @@
 build_and_store_wheels: &BUILD_AND_STORE_WHEELS
   install_cibuildwheel_script:
-    - python -m pip install cibuildwheel==2.12.3
+    - python -m pip install cibuildwheel==2.16.2
   run_cibuildwheel_script:
     - cibuildwheel ./package
   wheels_artifacts:
@@ -16,7 +16,8 @@ linux_aarch64_wheel_task:
     cpu: 4
     memory: 4G
   env:
-    CIBW_BUILD: cp39-manylinux* cp310-manylinux* cp311-manylinux*
+    CIBW_BUILD: cp39-manylinux_* cp310-manylinux_* cp311-manylinux_* cp312-manylinux_*
+    CIBW_ARCHS: ARM64
 
   build_script: |
     apt install -y python3-venv python-is-python3
@@ -29,7 +30,8 @@ macos_arm64_wheel_task:
   macos_instance:
     image: ghcr.io/cirruslabs/macos-monterey-xcode:14
   env:
-    CIBW_BUILD: cp39-* cp310-* cp311-*
+    CIBW_BUILD: cp39-* cp310-* cp311-* cp312-*
+    CIBW_ARCHS: ARM64
     PATH: /opt/homebrew/opt/[email protected]/bin:$PATH
 
   build_script: |