fix for varbin-10x...

KrasnitzLab · Jun 19, 2020 · fd3ab83 · fd3ab83
1 parent 51043d2
commit fd3ab83
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/sgains/executor.py b/sgains/executor.py
@@ -19,7 +19,7 @@ def create_local_cluster(self):
         print("workers=", workers, " threads_per_worker=", threads_per_worker)
         cluster = LocalCluster(
             n_workers=workers, threads_per_worker=threads_per_worker,
-            dashboard_address=':28787')
+            dashboard_address='0.0.0.0:28787')
         return cluster
 
     def create_sge_cluster(self):
@@ -45,7 +45,7 @@ def create_sge_cluster(self):
             name="sgains-tools",
             job_extra=job_extra,
             walltime='08:00:00',
-            dashboard_address=':28787',
+            dashboard_address='0.0.0.0:28787',
         )
         cluster.adapt(minimum=workers, maximum=workers)
         print("SGE cluster dashboard link:", cluster.dashboard_link)

diff --git a/sgains/pipelines/varbin_10x_pipeline.py b/sgains/pipelines/varbin_10x_pipeline.py
@@ -258,6 +258,7 @@ def process_cell_reads(self, cell_id):
         df.to_csv(outfile, sep='\t', index=False)
 
         cell_dirname = self._cell_reads_dirname(cell_id)
+        print(f"going to remove {cell_dirname}...")
         shutil.rmtree(cell_dirname)
 
         return cell_id