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lchorbadjiev committed Apr 23, 2019
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# Sparse Genomic Analysis of Individual Nuclei by Sequencing (s-GAINS)

**Please note that this software is still under construction and
not ready for general use**

[![DOI](https://zenodo.org/badge/98500084.svg)](https://zenodo.org/badge/latestdoi/98500084)

This document describes how to setup `s-GAINS` pipeline tool and its basic command.
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subcommand and sets values for the options of the subcommand.
The options passed from the command line override the options specified in the
configuration file.
configuration file.

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