script for Microbiome analysis

Example dataset

• moving picture data
• source: QIIME2 tutorial

load packages

library(ggplot2)
library(phyloseq)
library(tidyverse)
library(glue)
library(ggpubr)
library(ggtext)
library(ggrepel)
library(  .. )

Alpha diversity

Beta diversity

Taxonomy composition

Compare mean abundance of taxonomy

volcano plot

other