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Update changelog for release
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ctsa committed Oct 23, 2017
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8 changes: 6 additions & 2 deletions CHANGELOG.md
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## Unreleased
## v2.8.4 - 2017-10-23

This is a major bugfix update from v2.8.3. The two most notable changes are (1) a nearly 10-fold
reduction in memory usage during germline analysis and (2) fixing the default variant recall level
for male non-PAR chrX, or any region given a ploidy of 1 in the ploidy VCF file.

### Changed
- Switch to RapidJSON library for all json parsing (STREL-696)
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### Fixed
- Fix germline empirical variant scoring (EVS) for haploid regions (STREL-678)
- Previously, EVS resulted in reduced recall for haploid regions such as non-PAR regions of chrX in male samples.
After adding haploid training examples from NA12877 chrX, EVS preformance for haploid regions is compariable to diploid.
After adding haploid training examples from NA12877 chrX, EVS performance for haploid regions is comparable to diploid.
- Fix debug option to provide realigned reads in bam output (STREL-721/[#15])

## v2.8.3 - 2017-09-22
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