fc: team outputs and supplements

HopkinsIDD · Aug 6, 2019 · 310621d · 310621d
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diff --git a/Model-1_Supplement.pdf b/Model-1_Supplement.pdf
diff --git a/Model-2_Supplement.pdf b/Model-2_Supplement.pdf
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+# Achieving coordinated national immunity and cholera elimination in Haiti through vaccination
+
+This repository presents the supplementary texts for the manuscript "Achieving coordinated national immunity and cholera elimination in Haiti through vaccination".
+
+## Documents
+* `Main_Supplement.pdf`: Primary supplement document that describes the modeling exercise and summarizes results across teams.
+* `Model-1_Supplement.pdf`: Supplementary methods and results from Model-1 from the Johns Hopkins Bloomberg School of Public Health.
+* `Model-2_Supplement.pdf`: Supplementary methods and results from Model-2 from the Fred Hutchinson Cancer Research Center and University of Florida.
+* `Model-3_Supplement.pdf`: Supplementary methods and results from Model-3 from Ecole Polytechnique Fédérale de Lausanne.
+* `Model-4 Supplement.pdf`: Supplementary methods and results from Model-4 from the Institute for Disease Modeling.
+
+## Team Outputs
+This folder contains the following team model outputs at two elimination thresholds (thresh1 = less than 1 infection per 10000 population, or thresh2 = less than 1 case with no resurgence over a consecutive 52 week period):
+* `elimdate_...`: weekdate of elimination for each model simulation and vaccine deployment scenario
+* `pr_elim_...`: probability of elimination and cumulative number of infections for a given vaccine deployment scenario
+* `ts_...`: time series projections of true cholera infections and observed cholera cases for each vaccine deployment scenario
+* `tte_...`: time to elimination summary statistics for each vaccine deployment scenario
+
+## Model Codes
+All model inputs and codes are available at the following DOI links:
+* Model-1, Johns Hopkins Bloomberg School of Public Health: 10.5281/zenodo.3360991
+* Model-2, Fred Hutchinson Cancer Research Center and University of Florida: 10.5281/zenodo.3360857
+* Model-3, École Polytechnique Fédérale de Lausanne: 10.5281/zenodo.3360723
+* Model-4, Institute for Disease Modeling: 10.5281/zenodo.3360885