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{2023.06}[foss/2023b] GROMACS 2024.3 #709

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{2023.06}[foss/2023b] GROMACS 2024.3 #709

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bedroge
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@bedroge bedroge commented Sep 17, 2024

No description provided.

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eessi-bot bot commented Sep 17, 2024

Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi-hpc.org-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-software, eessi.io-2023.06-compat

@eessi-build-deploy-bot-deucalion EESSI build-deploy bot @ Deucalion
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Instance boegel-bot-deucalion is configured to build for:

  • architectures: aarch64/a64fx
  • repositories: eessi.io-2023.06-software

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eessi-bot bot commented Sep 17, 2024

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi-hpc.org-2023.06-compat, eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-software

@bedroge
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bedroge commented Sep 17, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

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eessi-bot bot commented Sep 17, 2024 •
edited
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

@eessi-build-deploy-bot-deucalion EESSI build-deploy bot @ Deucalion
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Updates by the bot instance boegel-bot-deucalion (click for details)
  • account bedroge has NO permission to send commands to the bot

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eessi-bot bot commented Sep 17, 2024 •
edited
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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

@eessi-bot eessi-bot
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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18866

date job status comment
Sep 17 13:50:50 UTC 2024 submitted job id 18866 awaits release by job manager
Sep 17 13:51:35 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:14:11 UTC 2024 running job 18866 is running
Sep 17 15:01:41 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-18866.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1726584796.tar.gzsize: 44 MiB (47047816 bytes)
entries: 769
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/aarch64/neoverse_v1/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/aarch64/neoverse_v1
no other files in tarball
Sep 17 15:01:41 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 11/11 test case(s) from 11 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-18866.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@bedroge
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bedroge commented Sep 17, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

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eessi-bot bot commented Sep 17, 2024 •
edited
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

@eessi-build-deploy-bot-deucalion EESSI build-deploy bot @ Deucalion
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Updates by the bot instance boegel-bot-deucalion (click for details)
  • account bedroge has NO permission to send commands to the bot

@eessi-bot eessi-bot
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eessi-bot bot commented Sep 17, 2024 •
edited
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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18868

date job status comment
Sep 17 14:19:18 UTC 2024 submitted job id 18868 awaits release by job manager
Sep 17 14:19:28 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:20:42 UTC 2024 running job 18868 is running
Sep 17 15:35:40 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-18868.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1726585430.tar.gzsize: 37 MiB (39066981 bytes)
entries: 769
modules under 2023.06/software/linux/aarch64/generic/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/aarch64/generic/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/aarch64/generic
no other files in tarball
Sep 17 15:35:40 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 11/11 test case(s) from 11 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-18868.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@eessi-bot eessi-bot
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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18869

date job status comment
Sep 17 14:19:22 UTC 2024 submitted job id 18869 awaits release by job manager
Sep 17 14:19:30 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:20:44 UTC 2024 running job 18869 is running
Sep 17 15:15:58 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-18869.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1726585510.tar.gzsize: 42 MiB (44667242 bytes)
entries: 769
modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/aarch64/neoverse_n1/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/aarch64/neoverse_n1
no other files in tarball
Sep 17 15:15:58 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 11/11 test case(s) from 11 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-18869.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@eessi-bot eessi-bot
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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/754

date job status comment
Sep 17 14:19:23 UTC 2024 submitted job id 754 awaits release by job manager
Sep 17 14:19:55 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:20:58 UTC 2024 running job 754 is running
Sep 17 14:54:45 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-754.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen4-1726584566.tar.gzsize: 47 MiB (49482145 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/amd/zen4/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/x86_64/amd/zen4/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/x86_64/amd/zen4
no other files in tarball
Sep 17 14:54:45 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 6/6 test case(s) from 6 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-754.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@eessi-bot eessi-bot
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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18870

date job status comment
Sep 17 14:19:26 UTC 2024 submitted job id 18870 awaits release by job manager
Sep 17 14:19:32 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:20:47 UTC 2024 running job 18870 is running
Sep 17 15:12:44 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-18870.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-generic-1726585210.tar.gzsize: 45 MiB (47250204 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/generic/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/x86_64/generic/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/x86_64/generic
no other files in tarball
Sep 17 15:12:44 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 11/11 test case(s) from 11 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-18870.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18871

date job status comment
Sep 17 14:19:30 UTC 2024 submitted job id 18871 awaits release by job manager
Sep 17 14:20:34 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:21:52 UTC 2024 running job 18871 is running
Sep 17 15:17:01 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-18871.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1726585690.tar.gzsize: 47 MiB (50080629 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/x86_64/amd/zen2/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/x86_64/amd/zen2
no other files in tarball
Sep 17 15:17:01 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 11/11 test case(s) from 11 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-18871.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18872

date job status comment
Sep 17 14:19:34 UTC 2024 submitted job id 18872 awaits release by job manager
Sep 17 14:20:37 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:21:54 UTC 2024 running job 18872 is running
Sep 17 15:07:15 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-18872.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1726585162.tar.gzsize: 47 MiB (50093290 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/x86_64/amd/zen3/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/x86_64/amd/zen3
no other files in tarball
Sep 17 15:07:15 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 11/11 test case(s) from 11 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-18872.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@eessi-bot eessi-bot
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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18873

date job status comment
Sep 17 14:19:42 UTC 2024 submitted job id 18873 awaits release by job manager
Sep 17 14:20:38 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:21:57 UTC 2024 running job 18873 is running
Sep 17 15:03:56 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-18873.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
No artefacts were created or found.
Sep 17 15:03:56 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-18873.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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eessi-bot bot commented Sep 17, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18874

date job status comment
Sep 17 14:19:46 UTC 2024 submitted job id 18874 awaits release by job manager
Sep 17 14:20:40 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:21:59 UTC 2024 running job 18874 is running
Sep 17 15:08:20 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-18874.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1726585229.tar.gzsize: 47 MiB (49427794 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/x86_64/intel/skylake_avx512
no other files in tarball
Sep 17 15:08:20 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 11/11 test case(s) from 11 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-18874.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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bedroge commented Sep 17, 2024

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18873

date job status comment
Sep 17 14:19:42 UTC 2024 submitted job id 18873 awaits release by job manager
Sep 17 14:20:38 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:21:57 UTC 2024 running job 18873 is running
Sep 17 15:03:56 UTC 2024 finished
😢 FAILURE (click triangle for details)
Sep 17 15:03:56 UTC 2024 test result
😢 FAILURE (click triangle for details)

File input/output error:
/tmp/bot/easybuild/build/GROMACS/2024.3/foss-2023b/easybuild_obj/api/gmxapi/cpp/tests/Testing/Temporary/GmxApiTest_RunnerChainedMD.trr

Same error as we've seen before, and also the same as I just saw on the EB test cluster (easybuilders/easybuild-easyconfigs#21430 (comment)). It doesn't happen consistently, so let's try again...

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell

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eessi-bot bot commented Sep 17, 2024 •
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

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Updates by the bot instance boegel-bot-deucalion (click for details)
  • account bedroge has NO permission to send commands to the bot

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eessi-bot bot commented Sep 17, 2024 •
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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

    • no jobs were submitted

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eessi-bot bot commented Sep 17, 2024 •
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New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18878

date job status comment
Sep 17 15:09:19 UTC 2024 submitted job id 18878 awaits release by job manager
Sep 17 15:09:23 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 15:10:33 UTC 2024 running job 18878 is running
Sep 17 16:01:09 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-18878.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-haswell-1726588339.tar.gzsize: 47 MiB (50087482 bytes)
entries: 769
modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all
GROMACS/2024.3-foss-2023b.lua
software under 2023.06/software/linux/x86_64/intel/haswell/software
GROMACS/2024.3-foss-2023b
other under 2023.06/software/linux/x86_64/intel/haswell
no other files in tarball
Sep 17 16:01:09 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 11/11 test case(s) from 11 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-18878.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@bedroge bedroge mentioned this pull request Sep 17, 2024
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boegel commented Sep 17, 2024

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.09/pr_709/18873
date job status comment
Sep 17 14:19:42 UTC 2024 submitted job id 18873 awaits release by job manager
Sep 17 14:20:38 UTC 2024 released job awaits launch by Slurm scheduler
Sep 17 14:21:57 UTC 2024 running job 18873 is running
Sep 17 15:03:56 UTC 2024 finished
😢 FAILURE (click triangle for details)
Sep 17 15:03:56 UTC 2024 test result
😢 FAILURE (click triangle for details)

File input/output error:
/tmp/bot/easybuild/build/GROMACS/2024.3/foss-2023b/easybuild_obj/api/gmxapi/cpp/tests/Testing/Temporary/GmxApiTest_RunnerChainedMD.trr

Same error as we've seen before, and also the same as I just saw on the EB test cluster (easybuilders/easybuild-easyconfigs#21430 (comment)). It doesn't happen consistently, so let's try again...

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell

see also https://gitlab.com/eessi/support/-/issues/47#note_1763083132, looks like there's still a problem that hasn't been resolved by https://gitlab.com/gromacs/gromacs/-/merge_requests/4066 then?

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bedroge commented Sep 17, 2024

see also https://gitlab.com/eessi/support/-/issues/47#note_1763083132, looks like there's still a problem that hasn't been resolved by https://gitlab.com/gromacs/gromacs/-/merge_requests/4066 then?

Looks like it, yeah. Though it's strange that it only seems to happen on haswell (?)), and it's almost like every second attempt does work 🤯😅

@bedroge bedroge added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Sep 17, 2024
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boegel commented Sep 17, 2024

see also https://gitlab.com/eessi/support/-/issues/47#note_1763083132, looks like there's still a problem that hasn't been resolved by https://gitlab.com/gromacs/gromacs/-/merge_requests/4066 then?

Looks like it, yeah. Though it's strange that it only seems to happen on haswell (?)), and it's almost like every second attempt does work 🤯😅

Could be more likely to happen on slower CPUs, perhaps? 2nd attempt is just sheer luck

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