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@EBIvariation

EBI Variation

The Variation team from EMBL-EBI develops several bioinformatics projects such as EVA, DGVa and EGA

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  1. vcf-validator vcf-validator Public

    Validation suite for Variant Call Format (VCF) files, implemented using C++11

    C 130 39

  2. eva-pipeline eva-pipeline Public

    Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

    Java 5 24

  3. eva-ws eva-ws Public

    European Variation Archive REST web services API

    Java 6 21

  4. eva-web eva-web Public

    Web front-end for the European Variation Archive

    JavaScript 5 10

  5. eva-tools eva-tools Public

    Tools compatible with the infrastructure of the European Variation Archive pipeline

    Java 1 13

  6. variation-commons variation-commons Public

    Library of core components used by multiple EBI Variation projects

    Java 2 16

Repositories

Showing 10 of 48 repositories
  • eva-ws Public

    European Variation Archive REST web services API

    EBIvariation/eva-ws’s past year of commit activity
    Java 6 Apache-2.0 21 0 10 Updated Sep 20, 2024
  • eva-accession Public

    EVA non-human variant accessioning service

    EBIvariation/eva-accession’s past year of commit activity
    Java 4 Apache-2.0 12 0 7 Updated Sep 20, 2024
  • eva-pipeline Public

    Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch

    EBIvariation/eva-pipeline’s past year of commit activity
    Java 5 Apache-2.0 24 0 8 Updated Sep 20, 2024
  • eva-sub-cli Public

    EVA Submission Command Line Interface for Validation

    EBIvariation/eva-sub-cli’s past year of commit activity
    HTML 0 Apache-2.0 4 0 1 Updated Sep 18, 2024
  • vcf-validator Public

    Validation suite for Variant Call Format (VCF) files, implemented using C++11

    EBIvariation/vcf-validator’s past year of commit activity
    C 130 Apache-2.0 39 7 8 Updated Sep 12, 2024
  • eva-submission Public

    Components that connect and automate main tasks in the EVA submission workflow

    EBIvariation/eva-submission’s past year of commit activity
    Python 1 Apache-2.0 7 0 3 Updated Sep 11, 2024
  • CMAT Public

    ClinVar Mapping and Annotation Toolkit

    EBIvariation/CMAT’s past year of commit activity
    Jupyter Notebook 18 Apache-2.0 10 57 1 Updated Sep 9, 2024
  • eva-tasks Public

    Code used to to perform tasks or one of analysis.

    EBIvariation/eva-tasks’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 6 0 5 Updated Aug 29, 2024
  • metadata-ws Public

    Generic REST API for submission metadata objects (usable by AMP T2D, EGA and EVA)

    EBIvariation/metadata-ws’s past year of commit activity
    Java 1 Apache-2.0 9 0 2 Updated Aug 26, 2024
  • ega-accession Public

    EGA accessioning service

    EBIvariation/ega-accession’s past year of commit activity
    Java 0 6 0 3 Updated Aug 26, 2024
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