Add OpenMP support for both GCC and Clang #182
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| name: 🧪 C-core testing | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| paths: | |
| - c-core/** | |
| - .github/workflows/test-c-core.yml | |
| defaults: | |
| run: | |
| working-directory: c-core | |
| jobs: | |
| test: | |
| runs-on: ${{matrix.os}} | |
| env: | |
| PREFIX: ${{github.workspace}}/deps | |
| C_INCLUDE_PATH: ${{github.workspace}}/deps/include | |
| LIBRARY_PATH: ${{github.workspace}}/deps/lib | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-13, macos-14] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: clone lite-pack | |
| run: git clone --depth 1 https://github.com/EBI-Metagenomics/lite-pack.git lite-pack | |
| - name: build & install lite-pack | |
| run: cd lite-pack && make && make install | |
| - name: build & install lite-pack-io | |
| run: cd lite-pack/ext && make && make install | |
| - name: clone hmmer3 | |
| run: git clone --depth 1 https://github.com/EBI-Metagenomics/hmmer3.git hmmer3 | |
| - name: build & install hmmer-reader | |
| run: cd hmmer3/hmmer-reader && make && make install | |
| - name: build & install h3result | |
| run: cd hmmer3/h3result && make && make install | |
| - name: build & install h3client | |
| run: cd hmmer3/h3client && make && make install | |
| - name: clone imm | |
| run: git clone --depth 1 https://github.com/EBI-Metagenomics/imm.git imm | |
| - name: build & install imm | |
| run: cd imm && make && make install | |
| - name: make | |
| run: make | |
| - name: make check | |
| run: make check |