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Minor tweaks

Minor tweaks #768

Workflow file for this run

name: CI
on:
push:
paths-ignore:
- 'docs/**'
- '**.rst'
- '**.md'
pull_request:
paths-ignore:
- 'docs/**'
- '**.rst'
- '**.md'
jobs:
tests:
runs-on: ${{ matrix.os }}
strategy:
matrix:
python-version: ['3.8', '3.12']
os: [ubuntu-latest, macos-latest, windows-latest]
exclude:
- os: macos-latest
python-version: '3.8'
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
pip install --upgrade pip
pip install .[all] jsonschema pytest duecredit
- name: Install dcm2niix posix
if: runner.os != 'Windows'
run: |
if [ "$RUNNER_OS" == "Linux" ]; then
sudo apt update && sudo apt install qt6-base-dev
mkdir dcm2niix_install/ && cd dcm2niix_install/
curl -fLO https://github.com/rordenlab/dcm2niix/releases/latest/download/dcm2niix_lnx.zip
unzip dcm2niix*.zip
echo "${{ github.workspace }}/dcm2niix_install/" >> $GITHUB_PATH
elif [ "$RUNNER_OS" == "macOS" ]; then
brew install dcm2niix
fi
- name: Install dcm2niix windows
if: runner.os == 'Windows'
run: |
curl -fLO https://github.com/rordenlab/dcm2niix/releases/latest/download/dcm2niix_win.zip
Expand-Archive dcm2niix_win.zip
Add-Content $env:GITHUB_PATH "${{ github.workspace }}/dcm2niix_win/"
- name: Tests with pytest
run: |
pytest tests
env:
DUECREDIT_ENABLE: no