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Implemented the building of congruent and embedded meshes from netCDF input data #1249

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Describe your changes here:

Implemented the functionality to produce "congruent" and "embedded" meshes from netCDF input data or more generally from given geospatial domains.

All these boxes must be checked by the reviewers before merging the pull request:

As a reviewer please read through all the code lines and make sure that the code is fully understood, bug free, well-documented and well-structured.

General

  • The reviewer executed the new code features at least once and checked the results manually

  • The code follows the t8code coding guidelines

  • New source/header files are properly added to the Makefiles

  • The code is well documented

  • All function declarations, structs/classes and their members have a proper doxygen documentation

  • All new algorithms and data structures are sufficiently optimal in terms of memory and runtime (If this should be merged, but there is still potential for optimization, create a new issue)

Tests

  • The code is covered in an existing or new test case using Google Test

Github action

  • The code compiles without warning in debugging and release mode, with and without MPI (this should be executed automatically in a github action)

  • All tests pass (in various configurations, this should be executed automatically in a github action)

    If the Pull request introduces code that is not covered by the github action (for example coupling with a new library):

    • Should this use case be added to the github action?
    • If not, does the specific use case compile and all tests pass (check manually)

Scripts and Wiki

  • If a new directory with source-files is added, it must be covered by the script/find_all_source_files.scp to check the indentation of these files.
  • If this PR introduces a new feature, it must be covered in an example/tutorial and a Wiki article.

License

  • The author added a BSD statement to doc/ (or already has one)

chiaraMaHe and others added 30 commits July 29, 2024 15:22
…rmat_line_ending

Enhancement: Use clang format line ending option for indentation
…l-examples

Simplify geometry computation for triangulated/prismed spheres.
…_FIRST_ATT

Rename T8_TREE/GHOST_FIRST_ATT to T8_TREE/GHOST_FIRST_ATT_INFO
…tion_documentation

Fix comment of t8_geom_linear_interpolation
sandro-elsweijer and others added 27 commits September 2, 2024 13:12
…pile_commands

Add option to export cmake compile commands
…ce_folder_structure

Retain source folder structure for CMake build
Revert format string change.
Co-authored-by: David Knapp <[email protected]>
Co-authored-by: David Knapp <[email protected]>
…cking

Add geometry checking to cmesh commit
Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 6 to 7.
- [Release notes](https://github.com/peter-evans/create-pull-request/releases)
- [Commits](peter-evans/create-pull-request@v6...v7)

---
updated-dependencies:
- dependency-name: peter-evans/create-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
…s/peter-evans/create-pull-request-7

Bump peter-evans/create-pull-request from 6 to 7
@Niklas997 Niklas997 self-assigned this Sep 17, 2024
@Niklas997 Niklas997 added the New feature Adds a new feature to the code label Sep 17, 2024
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10 participants