ClearMap Documentation

Documentation

This repository holds ClearMap's documentation and media sources.

Start browsing the documentation here.

For experimental protocols also refer to idisco.info

References

Cite us if you use the sofware in any form:

@article{kirst2020mapping,
   title={Mapping the fine-scale organization and plasticity of the brain vasculature},
   author={Kirst, Christoph and Skriabine, Sophie and Vieites-Prado, Alba and Topilko, Thomas and Bertin, Paul and Gerschenfeld, Gaspard and Verny, Florine and Topilko, Piotr and Michalski, Nicolas and Tessier-Lavigne, Marc and others},
   journal={Cell},
   volume={180},
   number={4},
   pages={780--795},
   year={2020},
   publisher={Elsevier},
   url={https://doi.org/10.1016/j.cell.2016.05.007}}

@article{renier2016mapping,
   title={Mapping of brain activity by automated volume analysis of immediate early genes},
   author={Renier, Nicolas and Adams, Eliza L and Kirst, Christoph and Wu, Zhuhao and Azevedo, Ricardo and Kohl, Johannes and Autry, Anita E and Kadiri, Lolahon and Venkataraju, Kannan Umadevi and Zhou, Yu and others},
   journal={Cell},
   volume={165},
   number={7},
   pages={1789--1802},
   year={2016},
   publisher={Elsevier},
   url={https://doi.org/10.1016/j.cell.2020.01.028}}

Build

To build this documentation run

$ cd Source
$ make html

To make the documentation public in github pages run

$ cd Source
$ make github

Authors

ClearMap was originally desinged and developed by Christoph Kirst.

The documentation was written by Christoph Kirst. and Nicolas Renier.

Contributions are very welcome.

License

This project is licensed under the GNU General Public License v3.0.

For other options contact the author Christoph Kirst ([email protected]).

Copyright © 2020 by Christoph Kirst