Open HDF5 files in read-only mode for readObject()-dispatched functions. #94
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: R CMD check | |
| jobs: | |
| check: | |
| name: R CMD check | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:devel | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set directories | |
| run: | | |
| echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV | |
| - name: Restore the package directory | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_PKG_DIR }} | |
| key: preinstalled-packages | |
| - name: Install packages | |
| shell: Rscript {0} | |
| run: | | |
| desc <- read.dcf("DESCRIPTION") | |
| deps <- desc[,intersect(colnames(desc), c("Depends", "Imports", "Suggests"))] | |
| deps <- sub("[ ,].*", "", unlist(strsplit(deps, "\n"))) | |
| BiocManager::install(deps) | |
| - name: Build the package | |
| run: R CMD build . | |
| - name: Test the package | |
| run: | | |
| tarball=$(ls *.tar.gz) | |
| R CMD check --no-manual $tarball |