Updated the NA handling policy for HDF5 data frames. #80
Workflow file for this run
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on: | |
push: | |
branches: | |
- master | |
pull_request: | |
name: R CMD check | |
jobs: | |
check: | |
name: R CMD check | |
runs-on: ubuntu-latest | |
container: bioconductor/bioconductor_docker:devel | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set directories | |
run: | | |
echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV | |
- name: Restore the package directory | |
uses: actions/cache@v3 | |
with: | |
path: ${{ env.R_PKG_DIR }} | |
key: check-packages | |
- name: Install dependencies | |
shell: Rscript {0} | |
run: | | |
stuff <- read.dcf("DESCRIPTION") | |
stuff <- stuff[,intersect(colnames(stuff), c("Imports", "LinkingTo", "Suggests", "Depends"))] | |
deps <- unlist(strsplit(stuff, ",\\s*"), use.names=FALSE) | |
BiocManager::install(deps) | |
- name: Build the package | |
run: R CMD build . | |
- name: Check the package | |
run: | | |
tarball=$(ls *.tar.gz) | |
R CMD check --no-manual $tarball |