run deploy also for mac and win #221
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name: Test and deploy code | |
on: [push] | |
jobs: | |
test: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
python-version: ["3.8", "3.9", "3.10"] | |
defaults: # Needed for conda | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
lfs: true | |
submodules: true | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
python-version: ${{ matrix.python-version }} | |
mamba-version: "*" | |
miniforge-variant: Mambaforge | |
channels: acellera,conda-forge,defaults | |
- name: Install Linux HTMD conda deps | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
mamba install --file package/htmd-deps/DEPENDENCIES python=${{ matrix.python-version }} -y | |
- name: Install MacOS HTMD conda deps | |
if: matrix.os == 'macos-latest' | |
run: | | |
mamba install --file package/htmd-deps/DEPENDENCIES_MAC python=${{ matrix.python-version }} -y | |
- name: Install Windows HTMD conda deps | |
if: matrix.os == 'windows-latest' | |
run: | | |
mamba install --file package/htmd-deps/DEPENDENCIES_WIN python=${{ matrix.python-version }} -y | |
- name: Install pip dependencies | |
run: | | |
pip install flake8 pytest | |
pip install . | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Test | |
run: | | |
export HTMD_NONINTERACTIVE=1 | |
pytest --verbose --durations=10 ./htmd/ | |
deploy: | |
if: startsWith(github.event.ref, 'refs/tags/') | |
needs: test | |
runs-on: ${{ matrix.os }} | |
defaults: # Needed for conda | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
python-version: ["3.8", "3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set version envvar | |
run: echo "BUILD_VERSION=${{ github.ref_name }}" >> $GITHUB_ENV | |
- name: Check version envvar | |
run: echo "Building version $BUILD_VERSION" | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
activate-environment: writedeps | |
auto-update-conda: true | |
python-version: ${{ matrix.python-version }} | |
mamba-version: "*" | |
miniforge-variant: Mambaforge | |
channels: acellera,conda-forge,defaults | |
- name: Dump exact Linux dependencies yaml file | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
mamba install --file package/htmd-deps/DEPENDENCIES python=${{ matrix.python-version }} -y | |
python package/htmd-deps/write_meta_yaml.py package/htmd-deps | |
- name: Dump exact MacOS dependencies yaml file | |
if: matrix.os == 'macos-latest' | |
run: | | |
mamba install --file package/htmd-deps/DEPENDENCIES_MAC python=${{ matrix.python-version }} -y | |
python package/htmd-deps/write_meta_yaml.py package/htmd-deps | |
- name: Dump exact Windows dependencies yaml file | |
if: matrix.os == 'windows-latest' | |
run: | | |
mamba install --file package/htmd-deps/DEPENDENCIES_WIN python=${{ matrix.python-version }} -y | |
python package/htmd-deps/write_meta_yaml.py package/htmd-deps | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-activate-base: true | |
activate-environment: build | |
python-version: ${{ matrix.python-version }} | |
mamba-version: "*" | |
miniforge-variant: Mambaforge | |
- name: Build htmd-deps conda package | |
run: | | |
echo "Building version $BUILD_VERSION" | |
mamba install anaconda-client conda-build python=${{ matrix.python-version }} boa | |
conda mambabuild --python ${{ matrix.python-version }} package/htmd-deps --output-folder ./pkg/ --no-include-recipe --no-anaconda-upload -c acellera -c conda-forge | |
- name: Build htmd conda package | |
run: | | |
echo "Building version $BUILD_VERSION" | |
conda mambabuild --python ${{ matrix.python-version }} package/htmd --output-folder ./pkg/ --no-include-recipe --no-anaconda-upload -c acellera -c conda-forge | |
- name: Upload to conda | |
run: | | |
anaconda -t ${{ secrets.ANACONDA_TOKEN_BASIC }} upload -u acellera ./pkg/*/htmd-*.tar.bz2 |