changes to go along with update AMReX-Hydro #562

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Run time

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Job	Run time
GCC EB 2D	4m 30s
GCC EB 2D	11m 28s
GCC EB 3D	6m 41s
GCC EB 3D	15m 9s
GCC NO EB 2D	3m 40s
GCC NO EB 2D	8m 44s
GCC NO EB 3D	4m 49s
GCC NO EB 3D	10m 50s
save_pr_number	9s
save_pr_number	9s
	1h 6m 9s