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update to 24.05
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@zingale
zingale committed May 1, 2024
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2 changes: 1 addition & 1 deletion external/Microphysics
Submodule Microphysics updated 89 files
+0 −1 .clang-tidy
+20 −0 .github/workflows/check_pr_branch.yml
+35 −0 .github/workflows/clang-tidy.yml
+18 −6 .github/workflows/compiler-warnings.yml
+22 −0 .github/workflows/dependencies_clang-tidy-apt-llvm.sh
+1 −1 .github/workflows/gh-pages.yml
+12 −0 CHANGES.md
+1 −1 EOS/breakout/_parameters
+2 −2 EOS/gamma_law/_parameters
+6 −6 EOS/helmholtz/_parameters
+3 −3 EOS/multigamma/_parameters
+4 −4 EOS/polytrope/_parameters
+14 −14 EOS/primordial_chem/_parameters
+3 −3 EOS/rad_power_law/_parameters
+1 −1 conductivity/constant/_parameters
+1 −1 conductivity/constant_opacity/_parameters
+1 −1 integration/BackwardEuler/_parameters
+2 −2 integration/QSS/_parameters
+2 −2 integration/RKC/_parameters
+35 −36 integration/_parameters
+7 −5 integration/nse_update_sdc.H
+24 −0 networks/CNO_extras/partition_functions.H
+24 −0 networks/ECSN/partition_functions.H
+24 −0 networks/He-C-Fe-group/partition_functions.H
+283 −281 networks/He-C-Fe-group/reaclib_rates.H
+3 −3 networks/_parameters
+1 −1 networks/aprox13/actual_network.H
+2 −2 networks/aprox19/actual_network.H
+24 −0 networks/ase/partition_functions.H
+151 −149 networks/ase/reaclib_rates.H
+24 −0 networks/ignition_reaclib/C-burn-simple/partition_functions.H
+24 −0 networks/ignition_reaclib/URCA-medium/partition_functions.H
+24 −0 networks/ignition_reaclib/URCA-simple/partition_functions.H
+24 −0 networks/nova/partition_functions.H
+24 −0 networks/nova2/partition_functions.H
+24 −0 networks/partition_test/partition_functions.H
+14 −12 networks/partition_test/reaclib_rates.H
+6 −6 networks/powerlaw/_parameters
+1 −1 networks/rhs.H
+1 −1 networks/rprox/_parameters
+24 −0 networks/sn160/partition_functions.H
+24 −0 networks/subch_approx/partition_functions.H
+24 −0 networks/subch_base/partition_functions.H
+124 −122 networks/subch_base/reaclib_rates.H
+24 −0 networks/subch_full/partition_functions.H
+24 −0 networks/subch_simple/partition_functions.H
+1 −1 networks/triple_alpha_plus_cago/_parameters
+5 −5 nse_solver/_parameters
+3 −3 nse_solver/make_table/_parameters
+4 −0 nse_solver/make_table/burn_cell.H
+2 −2 nse_solver/nse_check.H
+4 −4 nse_solver/nse_compatibility/_parameters
+1 −1 nse_tabular/_parameters
+14 −14 opacity/rad_power_law/_parameters
+1 −1 screening/_parameters
+2 −17 sphinx_docs/source/unit_tests.rst
+38 −38 unit_test/_parameters
+5 −5 unit_test/burn_cell/_parameters
+1 −0 unit_test/burn_cell/burn_cell.H
+16 −16 unit_test/burn_cell_primordial_chem/_parameters
+5 −0 unit_test/burn_cell_primordial_chem/burn_cell.H
+2 −2 unit_test/burn_cell_sdc/_parameters
+5 −2 unit_test/burn_cell_sdc/burn_cell.H
+2 −2 unit_test/eos_cell/_parameters
+4 −0 unit_test/eos_cell/eos_cell.H
+4 −0 unit_test/nse_table_cell/nse_cell.H
+5 −5 unit_test/test_aprox_rates/_parameters
+24 −24 unit_test/test_ase/_parameters
+4 −0 unit_test/test_ase/burn_cell.H
+3 −3 unit_test/test_ase/make_table/_parameters
+4 −0 unit_test/test_ase/make_table/burn_cell.H
+5 −5 unit_test/test_conductivity/_parameters
+5 −5 unit_test/test_eos/_parameters
+7 −7 unit_test/test_jac/_parameters
+1 −0 unit_test/test_linear_algebra/test_linear_algebra.H
+7 −7 unit_test/test_neutrino_cooling/_parameters
+3 −3 unit_test/test_nse/_parameters
+4 −0 unit_test/test_nse/nse_example.H
+4 −0 unit_test/test_nse_interp/nse_cell.H
+4 −0 unit_test/test_part_func/pf_cell.H
+7 −7 unit_test/test_react/_parameters
+5 −5 unit_test/test_rhs/_parameters
+7 −7 unit_test/test_screening/_parameters
+7 −7 unit_test/test_screening_templated/_parameters
+7 −7 unit_test/test_sdc/_parameters
+44 −44 unit_test/test_sdc_vode_rhs/_parameters
+1 −0 unit_test/test_sdc_vode_rhs/vode_rhs_test.H
+4 −5 util/build_scripts/runtime_parameters.py
+36 −10 util/microphysics_sort.H
2 changes: 1 addition & 1 deletion external/amrex
Submodule amrex updated 90 files
+3 −0 .clang-tidy
+4 −4 .github/workflows/bittree.yml
+6 −6 .github/workflows/clang.yml
+13 −25 .github/workflows/hip.yml
+4 −4 .github/workflows/hypre.yml
+1 −0 .github/workflows/intel.yml
+2 −2 .github/workflows/petsc.yml
+2 −2 .github/workflows/smoke.yml
+2 −2 .github/workflows/sundials.yml
+39 −0 CHANGES
+2 −2 Docs/sphinx_documentation/source/Basics.rst
+6 −0 Docs/sphinx_documentation/source/BuildingAMReX.rst
+2 −1 README.md
+3 −0 Src/Amr/AMReX_Amr.H
+11 −6 Src/Amr/AMReX_Amr.cpp
+5 −4 Src/Amr/AMReX_AmrLevel.cpp
+11 −11 Src/AmrCore/AMReX_FillPatchUtil_I.H
+6 −6 Src/AmrCore/AMReX_FillPatcher.H
+5 −1 Src/AmrCore/AMReX_Interp_2D_C.H
+5 −1 Src/AmrCore/AMReX_Interp_3D_C.H
+0 −4 Src/AmrCore/AMReX_MFInterp_C.H
+1 −8 Src/Base/AMReX_BLProfiler.H
+31 −31 Src/Base/AMReX_FabArray.H
+2 −5 Src/Base/AMReX_GpuDevice.H
+22 −0 Src/Base/AMReX_GpuDevice.cpp
+12 −1 Src/Base/AMReX_MultiFab.H
+97 −1 Src/Base/AMReX_MultiFab.cpp
+9 −0 Src/Base/AMReX_PODVector.H
+20 −0 Src/Base/AMReX_Scan.H
+4 −10 Src/Base/AMReX_TinyProfiler.H
+78 −174 Src/Base/AMReX_TinyProfiler.cpp
+24 −0 Src/Base/AMReX_Tuple.H
+4 −0 Src/Base/Parser/AMReX_IParser_Exe.H
+4 −0 Src/Base/Parser/AMReX_Parser_Exe.H
+12 −2 Src/Base/Parser/AMReX_Parser_Y.H
+1 −0 Src/Base/Parser/amrex_parser.l
+129 −125 Src/Base/Parser/amrex_parser.lex.nolint.H
+4 −6 Src/Boundary/AMReX_YAFluxRegister_K.H
+8 −0 Src/CMakeLists.txt
+3 −1 Src/EB/AMReX_EB2_2D_C.H
+6 −2 Src/EB/AMReX_EB2_3D_C.H
+31 −23 Src/EB/AMReX_EB2_3D_C.cpp
+1 −0 Src/EB/AMReX_EB2_C.H
+1 −1 Src/EB/AMReX_EB2_Level.H
+10 −12 Src/EB/AMReX_EBFluxRegister_2D_C.H
+10 −12 Src/EB/AMReX_EBFluxRegister_3D_C.H
+0 −3 Src/EB/AMReX_EB_Slopes_2D_K.H
+0 −3 Src/EB/AMReX_EB_Slopes_3D_K.H
+3 −3 Src/Extern/HYPRE/AMReX_Hypre.cpp
+1 −1 Src/Extern/HYPRE/AMReX_HypreABecLap.cpp
+1 −1 Src/Extern/HYPRE/AMReX_HypreABecLap2.cpp
+1 −1 Src/Extern/HYPRE/AMReX_HypreABecLap3.cpp
+8 −8 Src/Extern/HYPRE/AMReX_HypreIJIface.cpp
+1 −1 Src/Extern/HYPRE/AMReX_HypreNodeLap.cpp
+2 −2 Src/Extern/HYPRE/AMReX_HypreSolver.H
+3 −3 Src/Extern/PETSc/AMReX_PETSc.cpp
+1 −1 Src/Extern/SUNDIALS/AMReX_Sundials.H
+2 −2 Src/LinearSolvers/MLMG/AMReX_MLEBABecLap_K.H
+1 −1 Src/LinearSolvers/MLMG/AMReX_MLNodeABecLaplacian.cpp
+31 −12 Src/LinearSolvers/MLMG/AMReX_MLNodeLap_2D_K.H
+39 −13 Src/LinearSolvers/MLMG/AMReX_MLNodeLap_3D_K.H
+2 −3 Src/LinearSolvers/MLMG/AMReX_MLNodeLap_K.H
+2 −2 Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian.cpp
+12 −12 Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian_hypre.cpp
+5 −1 Src/LinearSolvers/MLMG/AMReX_MLNodeTensorLap_2D_K.H
+5 −1 Src/LinearSolvers/MLMG/AMReX_MLNodeTensorLap_3D_K.H
+0 −19 Src/LinearSolvers/MLMG/AMReX_MLNodeTensorLap_K.H
+4 −4 Src/LinearSolvers/MLMG/AMReX_MLNodeTensorLaplacian.cpp
+3 −3 Src/Particle/AMReX_NeighborList.H
+1 −1 Src/Particle/AMReX_NeighborParticlesI.H
+0 −3 Src/Particle/AMReX_Particle.H
+1 −1 Src/Particle/AMReX_ParticleCommunication.H
+13 −2 Src/Particle/AMReX_ParticleContainer.H
+13 −0 Src/Particle/AMReX_ParticleContainerI.H
+2 −2 Src/Particle/AMReX_ParticleIO.H
+16 −23 Tests/EB_CNS/Source/hydro/CNS_hydro_K.H
+16 −20 Tests/EB_CNS/Source/hydro/CNS_hydro_eb_K.H
+16 −23 Tests/GPU/CNS/Source/hydro/CNS_hydro_K.H
+0 −4 Tests/LinearSolvers/CellEB2/MyTest_K.H
+1 −1 Tools/CMake/AMReXClangTidy.cmake
+2 −0 Tools/CMake/AMReXConfig.cmake.in
+12 −0 Tools/CMake/AMReXFlagsTargets.cmake
+14 −0 Tools/CMake/AMReXOptions.cmake
+9 −2 Tools/CMake/AMReXSetDefines.cmake
+1 −0 Tools/CMake/AMReX_Config_ND.H.in
+1 −1 Tools/C_scripts/mmclt.py
+7 −0 Tools/GNUMake/Make.defs
+5 −0 Tools/GNUMake/comps/gnu.mak
+1 −1 Tools/GNUMake/tools/Make.clang-tidy
+13 −4 Tools/Plotfile/fcompare.cpp

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