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Genome sequences and annotation gff files of Apostasia shenzhenica and Phalaenopsis equestris were downloaded from: https://www.ncbi.nlm.nih.gov/genome/66931
ftp://ftp.genomics.org.cn/pub/Orchid_Phalaenopsis_equestris/
Genome sequences and annotation gff files of Apostasia shenzhenica and Phalaenopsis equestris were downloaded from:
https://www.ncbi.nlm.nih.gov/genome/66931
ftp://ftp.genomics.org.cn/pub/Orchid_Phalaenopsis_equestris/
Errors:
1.
Traceback (most recent call last):
File "generate_conf.py", line 117, in
chrom=chrom,lens=lens,count=gene_count[chrom]), file=len_file)
KeyError: 'KZ451892.1'
Traceback (most recent call last):
File "generate_conf.py", line 89, in
gene_dict, tx_pos_dict, CDS_dict= parse_gff( args.gff )
File "generate_conf.py", line 67, in parse_gff
tx_parent = re.search(r'Parent=(.*?)[;\n]',content[8]).group(1)
AttributeError: 'NoneType' object has no attribute 'group'
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