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README.md

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这是一个个人向的仓库, 里面记录的代码大部分都没有比较详细的使用说明, 或许一些脚本还存在bug, 所以请谨慎参考

scripts

simple2links.py

convert the .simple file from JCVI to the input of CIRCOS.

Usage: python3 simple2links.py xxx.yyy.anchors.simple

Required: xxx.bed and yyy.bed(should be in the same directory of xxx.yyy.anchors.simple)

Output: xxx.yyy.anchors.simple_link.txt

annotate_cds_in_transcripts.sh

欢迎针对某个具体script提Issue