Update JSON, SVG, PNG, TSV and GPML files

pathways/WP112/WP112-datanodes.tsv

@@ -111,6 +111,6 @@ DAL7	GeneProduct	ensembl:YIR031C	""	ensembl:YIR031C	ncbigene:854849		uniprot:P21
 KGD2	GeneProduct	ensembl:YDR148C	""	ensembl:YDR148C	ncbigene:851726		uniprot:P19262								
 KGD1	GeneProduct	ensembl:YIL125W	""	ensembl:YIL125W	ncbigene:854681		uniprot:P20967								
 IDH1	GeneProduct	ensembl:YNL037C	""	ensembl:YNL037C	ncbigene:855691		uniprot:P28834								
-ICL1	GeneProduct	ensembl:YER065C	"peroxisome</br>Type your comment here"	ensembl:YER065C	ncbigene:856794		uniprot:P28240								
-MLS1	GeneProduct	ensembl:YNL117W	"peroxisome</br>Type your comment here"	ensembl:YNL117W	ncbigene:855606		uniprot:P30952								
+ICL1	GeneProduct	ensembl:YER065C	"peroxisome"	ensembl:YER065C	ncbigene:856794		uniprot:P28240								
+MLS1	GeneProduct	ensembl:YNL117W	"peroxisome"	ensembl:YNL117W	ncbigene:855606		uniprot:P30952								
 ACO1	GeneProduct	ensembl:YLR304C	""	ensembl:YLR304C	ncbigene:851013		uniprot:P19414								

pathways/WP112/WP112.gpml

@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Principal pathways of carbon metabolism" Data-Source="WikiPathways" Version="WP112_r134272" Author="[Kdahlquist, MaintBot, Thomas, Egonw, Ddigles, Khanspers, AlexanderPico, DeSl, Eweitz]" Last-Modified="20240719065429" Organism="Saccharomyces cerevisiae">
+<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Principal pathways of carbon metabolism" Data-Source="WikiPathways" Version="WP112_r134397" Author="[Kdahlquist, MaintBot, Thomas, Egonw, Ddigles, Khanspers, AlexanderPico, DeSl, Eweitz]" Last-Modified="20240721194702" Organism="Saccharomyces cerevisiae">
   <Comment Source="WikiPathways-description">Based on Glycolysis and Gluconeogenesis Pathways at SGD and on Kruckeberg, AL and Dickinson, JR (2004) Carbon Metabolism in The Metabolism and Molecular Physiology of Saccharomyces cerevisiae, Dickinson, JR and Schweizer, M, eds, CRC Press.</Comment>
   <Graphics BoardWidth="1760.2725548290641" BoardHeight="2130.1559286628676" />
   <DataNode TextLabel="2-Phosphoglycerate" GraphId="de48f" Type="Metabolite">
@@ -533,14 +533,12 @@
   </DataNode>
   <DataNode TextLabel="ICL1" GraphId="c8b2e" Type="GeneProduct">
     <Comment>peroxisome</Comment>
-    <Comment>Type your comment here</Comment>
     <Attribute Key="org.pathvisio.model.BackpageHead" Value="ICL1 (peroxisome)" />
     <Graphics CenterX="1076.2096448702355" CenterY="1884.8203246434132" Width="61.4524765729584" Height="20.0" ZOrder="33064" FontSize="10" Valign="Middle" />
     <Xref Database="Ensembl" ID="YER065C" />
   </DataNode>
   <DataNode TextLabel="MLS1" GraphId="c9b82" Type="GeneProduct" GroupRef="ad054">
     <Comment>peroxisome</Comment>
-    <Comment>Type your comment here</Comment>
     <Graphics CenterX="742.5790888910451" CenterY="1813.2891366001006" Width="70.18072289156589" Height="20.0" ZOrder="33066" FontSize="10" Valign="Middle" />
     <Xref Database="Ensembl" ID="YNL117W" />
   </DataNode>

pathways/WP112/WP112.json

@@ -3926,9 +3926,6 @@
       "comments": [
         {
           "content": "peroxisome"
-        },
-        {
-          "content": "Type your comment here"
         }
       ],
       "drawAs": "rect",
@@ -4105,9 +4102,6 @@
       "comments": [
         {
           "content": "peroxisome"
-        },
-        {
-          "content": "Type your comment here"
         }
       ],
       "drawAs": "rect",
@@ -15949,7 +15943,7 @@
       "f53cd",
       "c1463"
     ],
-    "dataSourceVersion": "WP112_r134272",
+    "dataSourceVersion": "WP112_r134397",
     "displayName": "Principal pathways of carbon metabolism",
     "drawAs": "rect",
     "fill": "white",
@@ -15959,7 +15953,7 @@
     "height": 2130.1559286628676,
     "id": "WP112",
     "kaavioType": "Group",
-    "lastModified": "20240719065429",
+    "lastModified": "20240721194702",
     "name": "Principal pathways of carbon metabolism",
     "organism": "Saccharomyces cerevisiae",
     "padding": 5,
@@ -15968,7 +15962,7 @@
     "stroke": "black",
     "strokeWidth": 0,
     "textAlign": "left",
-    "textContent": "Name: Principal pathways of carbon metabolism\nLast Modified: 20240719065429\nOrganism: Saccharomyces cerevisiae",
+    "textContent": "Name: Principal pathways of carbon metabolism\nLast Modified: 20240721194702\nOrganism: Saccharomyces cerevisiae",
     "type": [
       "Pathway",
       "http://identifiers.org/pw/PW:0000469"

pathways/WP262/WP262-bibliography.tsv

@@ -1,5 +1,5 @@
 ID	Database	Citation
-16446357	Pubmed	"Uemura N, Kajino T, Sanjo H, Sato S, Akira S, Matsumoto K, et al. TAK1 is a component of the Epstein-Barr virus LMP1 complex and is essential for activation of JNK but not of NF-kappaB. J Biol Chem. 2006 Mar 24;281(12):7863–72.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/16446357"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/16446357"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/16446357"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
-16477006	Pubmed	"Song Y-J, Jen K-Y, Soni V, Kieff E, Cahir-McFarland E. IL-1 receptor-associated kinase 1 is critical for latent membrane protein 1-induced p65/RelA serine 536 phosphorylation and NF-kappaB activation. Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2689–94.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/16477006"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/16477006"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/16477006"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
-18052967	Pubmed	"Lee J-S, Lee J-Y, Son JW, Oh J-H, Shin D-M, Yuk J-M, et al. Expression and regulation of the CC-chemokine ligand 20 during human tuberculosis. Scand J Immunol. 2008 Jan;67(1):77–85.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/18052967"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/18052967"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/18052967"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
-18089854	Pubmed	"Battaglia F, Delfino S, Merello E, Puppo M, Piva R, Varesio L, et al. Hypoxia transcriptionally induces macrophage-inflammatory protein-3alpha/CCL-20 in primary human mononuclear phagocytes through nuclear factor (NF)-kappaB. J Leukoc Biol. 2008 Mar;83(3):648–62.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/18089854"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/18089854"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/18089854"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
+16446357	Pubmed	"TAK1 is a component of the Epstein-Barr virus LMP1 complex and is essential for activation of JNK but not of NF-kappaB. Uemura N, Kajino T, Sanjo H, Sato S, Akira S, Matsumoto K, et al. J Biol Chem. 2006 Mar 24;281(12):7863–72.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/16446357"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/16446357"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/16446357"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
+16477006	Pubmed	"IL-1 receptor-associated kinase 1 is critical for latent membrane protein 1-induced p65/RelA serine 536 phosphorylation and NF-kappaB activation. Song YJ, Jen KY, Soni V, Kieff E, Cahir-McFarland E. Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2689–94.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/16477006"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/16477006"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/16477006"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
+18052967	Pubmed	"Expression and regulation of the CC-chemokine ligand 20 during human tuberculosis. Lee JS, Lee JY, Son JW, Oh JH, Shin DM, Yuk JM, et al. Scand J Immunol. 2008 Jan;67(1):77–85.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/18052967"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/18052967"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/18052967"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
+18089854	Pubmed	"Hypoxia transcriptionally induces macrophage-inflammatory protein-3alpha/CCL-20 in primary human mononuclear phagocytes through nuclear factor (NF)-kappaB. Battaglia F, Delfino S, Merello E, Puppo M, Piva R, Varesio L, et al. J Leukoc Biol. 2008 Mar;83(3):648–62.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/18089854"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/18089854"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/18089854"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"