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actions-user committed Jul 4, 2024
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2 changes: 1 addition & 1 deletion pathways/WP1/WP1-bibliography.tsv
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ID Database Citation
10770267 Pubmed "Chen H, Ikeda U, Shimpo M, Shimada K. Direct effects of statins on cells primarily involved in atherosclerosis. Hypertens Res. 2000 Mar;23(2):187–92. <a href=""http://www.ncbi.nlm.nih.gov/pubmed/10770267"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/10770267"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/10770267"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
10770267 Pubmed "Direct effects of statins on cells primarily involved in atherosclerosis. Chen H, Ikeda U, Shimpo M, Shimada K. Hypertens Res. 2000 Mar;23(2):187–92. <a href=""http://www.ncbi.nlm.nih.gov/pubmed/10770267"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/10770267"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/10770267"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
59 changes: 29 additions & 30 deletions pathways/WP1/WP1-datanodes.tsv
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Label Type Identifier Comment Ensembl NCBI gene HGNC UniProt Wikidata ChEBI InChI
Triglycerides Metabolite chebi:17855 wikidata:Q186319 chebi:17855;chebi:17855
Phospholipid Metabolite chebi:16247 wikidata:Q186915 chebi:16247;chebi:16247
Free FA Metabolite chebi:35366 wikidata:Q61476 chebi:35366;chebi:35366
Cholesterol Ester Metabolite chebi:17002 wikidata:Q415555 chebi:17002;chebi:17002
Cholesterol Metabolite hmdb:HMDB0000067 chebi:16113;chebi:16113 inchikey:HVYWMOMLDIMFJA-DPAQBDIFSA-N
Cholesterol Metabolite chebi:16113 wikidata:Q43656 chebi:16113;chebi:16113 inchikey:HVYWMOMLDIMFJA-DPAQBDIFSA-N
Statin Metabolite chebi:87631 wikidata:Q954845 chebi:87631;chebi:87631
Cholic acid Metabolite hmdb:HMDB0000619 chebi:16359;chebi:16359 inchikey:BHQCQFFYRZLCQQ-OELDTZBJSA-N
Acetyl-CoA Metabolite hmdb:HMDB0001206 chebi:15351;chebi:15351 inchikey:ZSLZBFCDCINBPY-ZSJPKINUSA-N
Lrp1 GeneProduct ncbigene:16971 ensembl:ENSMUSG00000040249 ncbigene:16971 uniprot:F6UAC8;uniprot:Q3U5J2;uniprot:A0A0R4J0I9;uniprot:D3Z5M3;uniprot:F6XU19
Apoc3 GeneProduct ncbigene:11814 ensembl:ENSMUSG00000032081 ncbigene:11814 uniprot:D3YXN8;uniprot:A0A0R4J1N3;uniprot:E9QP56
Apoc2 GeneProduct ncbigene:11813 ensembl:ENSMUSG00000002992 ncbigene:11813 uniprot:Q3UJG0;uniprot:Q05020
Lipc GeneProduct ncbigene:15450 ensembl:ENSMUSG00000032207 ncbigene:15450 uniprot:P27656;uniprot:Q3TYU0;uniprot:A0A1L1SRU8
Cetp GeneProduct ncbigene:1071
Apoa4 GeneProduct ncbigene:11808 ensembl:ENSMUSG00000032080 ncbigene:11808 uniprot:P06728
Dgat1 GeneProduct ncbigene:13350 ensembl:ENSMUSG00000022555 ncbigene:13350 uniprot:Q54AA6;uniprot:Q9Z2A7
Lpl GeneProduct ncbigene:16956 ensembl:ENSMUSG00000015568 ncbigene:16956 uniprot:P11152
Scarb1 GeneProduct ncbigene:20778 ensembl:ENSMUSG00000037936 ncbigene:20778 uniprot:F7C5U2;uniprot:Q61009;uniprot:D3Z5U8
Pltp GeneProduct ncbigene:18830 ensembl:ENSMUSG00000017754 ncbigene:18830 uniprot:A2A5K3;uniprot:A2A5K4;uniprot:P55065;uniprot:Q3UFS5;uniprot:A2A5K2
Ldlr GeneProduct ncbigene:16835 ensembl:ENSMUSG00000032193 ncbigene:16835 uniprot:A0A1L1SRE8;uniprot:P35951
Abca1 GeneProduct ncbigene:11303 ensembl:ENSMUSG00000015243 ncbigene:11303 uniprot:P41233
Cyp7a1 GeneProduct ncbigene:13122 ensembl:ENSMUSG00000028240 ncbigene:13122 uniprot:Q64505
Hmgcr GeneProduct ncbigene:15357 ensembl:ENSMUSG00000021670 ncbigene:15357 uniprot:E9PVG9;uniprot:E9Q149;uniprot:Q01237;uniprot:E9PY17;uniprot:E9Q5H3;uniprot:F7CA39;uniprot:F2Z470;uniprot:F6X166
Apoa1 GeneProduct ncbigene:11806 ensembl:ENSMUSG00000032083 ncbigene:11806 uniprot:A0A1L1STX7;uniprot:Q00623
Soat1 GeneProduct ncbigene:20652 ensembl:ENSMUSG00000026600 ncbigene:20652 uniprot:A0A087WSJ5;uniprot:Q61263;uniprot:A0A087WNN8
Lcat GeneProduct ncbigene:16816 ensembl:ENSMUSG00000035237 ncbigene:16816 uniprot:P16301
Mttp GeneProduct ncbigene:17777 ensembl:ENSMUSG00000028158 ncbigene:17777 uniprot:O08601
Apoc1 GeneProduct ncbigene:11812 ensembl:ENSMUSG00000040564 ncbigene:11812 uniprot:P34928;uniprot:A0A140LIY8
Apoe GeneProduct ncbigene:11816 ensembl:ENSMUSG00000002985 ncbigene:11816 uniprot:G3UWN5;uniprot:Q3TXU4;uniprot:P08226;uniprot:G3UWW2;uniprot:G3UZM8;uniprot:A0A1B0GX15
Label Type Identifier Comment Ensembl NCBI gene HGNC UniProt Wikidata ChEBI InChI PubChem ChemSpider HMDB KEGG LipidMaps
Triglycerides Metabolite chebi:17855 "" wikidata:Q186319 chebi:17855 kegg.compound:C00422 lipidmaps:LMGL0301;lipidmaps:LMGL03010000
Phospholipid Metabolite chebi:16247 "" wikidata:Q186915 chebi:16247 kegg.compound:C00865
Fatty acid Metabolite chebi:35366 "" wikidata:Q61476 chebi:35366 kegg.compound:C00162 lipidmaps:LMFA01010000
Cholesterol ester Metabolite chebi:17002 "" wikidata:Q415555 chebi:17002 kegg.compound:C02530
Cholesterol Metabolite hmdb:HMDB0000067 "" chebi:16113 inchikey:HVYWMOMLDIMFJA-DPAQBDIFSA-N pubchem.compound:5997 hmdb:HMDB0000067 kegg.compound:C00187
Statin Metabolite chebi:87631 "" wikidata:Q954845 chebi:87631
Cholic acid Metabolite hmdb:HMDB0000619 "" chebi:16359 inchikey:BHQCQFFYRZLCQQ-OELDTZBJSA-N pubchem.compound:221493 chemspider:192176 hmdb:HMDB0000619 kegg.compound:C00695
Acetyl-CoA Metabolite hmdb:HMDB0001206 "" chebi:15351 inchikey:ZSLZBFCDCINBPY-ZSJPKINUSA-N pubchem.compound:444493 chemspider:392413 hmdb:HMDB0001206 kegg.compound:C00024
Lrp1 GeneProduct ncbigene:16971 "" ensembl:ENSMUSG00000040249 ncbigene:16971 uniprot:F6UAC8;uniprot:Q3U5J2;uniprot:A0A0R4J0I9;uniprot:D3Z5M3;uniprot:F6XU19
Apoc3 GeneProduct ncbigene:11814 "" ensembl:ENSMUSG00000032081 ncbigene:11814 uniprot:D3YXN8;uniprot:A0A0R4J1N3;uniprot:E9QP56
Apoc2 GeneProduct ncbigene:11813 "" ensembl:ENSMUSG00000002992 ncbigene:11813 uniprot:Q3UJG0;uniprot:Q05020
Lipc GeneProduct ncbigene:15450 "" ensembl:ENSMUSG00000032207 ncbigene:15450 uniprot:P27656;uniprot:Q3TYU0;uniprot:A0A1L1SRU8
Cetp GeneProduct ncbigene:1071 ""
Apoa4 GeneProduct ncbigene:11808 "" ensembl:ENSMUSG00000032080 ncbigene:11808 uniprot:P06728
Dgat1 GeneProduct ncbigene:13350 "" ensembl:ENSMUSG00000022555 ncbigene:13350 uniprot:Q54AA6;uniprot:Q9Z2A7
Lpl GeneProduct ncbigene:16956 "" ensembl:ENSMUSG00000015568 ncbigene:16956 uniprot:P11152
Scarb1 GeneProduct ncbigene:20778 "" ensembl:ENSMUSG00000037936 ncbigene:20778 uniprot:F7C5U2;uniprot:Q61009;uniprot:D3Z5U8
Pltp GeneProduct ncbigene:18830 "" ensembl:ENSMUSG00000017754 ncbigene:18830 uniprot:A2A5K3;uniprot:A2A5K4;uniprot:P55065;uniprot:Q3UFS5;uniprot:A2A5K2
Ldlr GeneProduct ncbigene:16835 "" ensembl:ENSMUSG00000032193 ncbigene:16835 uniprot:A0A1L1SRE8;uniprot:P35951
Abca1 GeneProduct ncbigene:11303 "" ensembl:ENSMUSG00000015243 ncbigene:11303 uniprot:P41233
Cyp7a1 GeneProduct ncbigene:13122 "" ensembl:ENSMUSG00000028240 ncbigene:13122 uniprot:Q64505
Hmgcr GeneProduct ncbigene:15357 "" ensembl:ENSMUSG00000021670 ncbigene:15357 uniprot:E9PVG9;uniprot:E9Q149;uniprot:Q01237;uniprot:E9PY17;uniprot:E9Q5H3;uniprot:F7CA39;uniprot:F2Z470;uniprot:F6X166
Apoa1 GeneProduct ncbigene:11806 "" ensembl:ENSMUSG00000032083 ncbigene:11806 uniprot:A0A1L1STX7;uniprot:Q00623
Soat1 GeneProduct ncbigene:20652 "" ensembl:ENSMUSG00000026600 ncbigene:20652 uniprot:A0A087WSJ5;uniprot:Q61263;uniprot:A0A087WNN8
Lcat GeneProduct ncbigene:16816 "" ensembl:ENSMUSG00000035237 ncbigene:16816 uniprot:P16301
Mttp GeneProduct ncbigene:17777 "" ensembl:ENSMUSG00000028158 ncbigene:17777 uniprot:O08601
Apoc1 GeneProduct ncbigene:11812 "" ensembl:ENSMUSG00000040564 ncbigene:11812 uniprot:P34928;uniprot:A0A140LIY8
Apoe GeneProduct ncbigene:11816 "" ensembl:ENSMUSG00000002985 ncbigene:11816 uniprot:G3UWN5;uniprot:Q3TXU4;uniprot:P08226;uniprot:G3UWW2;uniprot:G3UZM8;uniprot:A0A1B0GX15
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