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Flatten all argument lists in config files #408

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Description

This finally removes all usage of nested lists when passing arguments in site config files.

Motivation and Context

Fixes #226.

We've supported flat argument lists for at least three years now. I'd like the need to not use nested lists to propagate (we still deploy configs that have nested lists...)

How Has This Been Tested?

Untested, but mostly documentation changes. Tests in the CI will catch any issues with the modifications in tests/default.yaml.

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • Documentation change

Checklist:

  • My code follows the code style of this project.
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly.

@BrianJKoopman BrianJKoopman added the cleanup Cleanup that of old code or documentation label Sep 19, 2024
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Come clean about agent args in site-config
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