v2.1.1

PEtab v2.1.1

Diff since v2.1.0

Merged pull requests:

• Extend sbml stoichiometry math expressions (#117) (@sebapersson)
• Catch if measurement noise is evaluated to be smaller than zero. (#118) (@sebapersson)

Closed issues:

• PEtab cost function produce occasional DomainError (#116)

v2.1.0

PEtab v2.1.0

Diff since v2.0.4

Merged pull requests:

• Refactor SBML importer (#113) (@sebapersson)
• Merge Zygote and SciMLSensitivity extensions (#115) (@sebapersson)

Closed issues:

• In certain situations, getting stuck running ]add PEtab (#114)

v2.0.4

PEtab v2.0.4

Diff since v2.0.2

Merged pull requests:

• Extend sbml (#110) (@sebapersson)
• Extend sbml (#111) (@sebapersson)
• Refactor SBML importer (#112) (@sebapersson)

v2.0.3

PEtab v2.0.3

Diff since v2.0.2

Merged pull requests:

• Extend sbml (#110) (@sebapersson)

v2.0.2

PEtab v2.0.2

Diff since v2.0.1

Merged pull requests:

• CompatHelper: bump compat for NonlinearSolve to 2, (keep existing compat) (#89) (@github-actions[bot])
• CompatHelper: add new compat entry for Catalyst at version 13 for package docs, (keep existing compat) (#101) (@github-actions[bot])
• CompatHelper: add new compat entry for DataFrames at version 1 for package docs, (keep existing compat) (#102) (@github-actions[bot])
• CompatHelper: add new compat entry for ModelingToolkit at version 8 for package docs, (keep existing compat) (#103) (@github-actions[bot])
• CompatHelper: add new compat entry for Distributions at version 0.25 for package docs, (keep existing compat) (#104) (@github-actions[bot])
• Expand SBML support (#107) (@sebapersson)
• Extend sbml support (#109) (@sebapersson)

v2.0.1

PEtab v2.0.1

Diff since v2.0.0

Merged pull requests:

• SciMLBase = "1, 2" (#96) (@TorkelE)
• Improve plot display (#97) (@TorkelE)
• Remove redundant documentation for events (#99) (@sebapersson)
• Extend sbml (#106) (@sebapersson)

Closed issues:

• Change from camelCase to snake_case (#69)
• In events documentation, the "Modifying Event Parameters for Different Simulation Conditions" section appear twice (#95)

v2.0.0

PEtab v2.0.0

Diff since v1.4.7

Merged pull requests:

• Catalyst integration (#68) (@sebapersson)
• CompatHelper: add new compat entry for DataFrames at version 1, (keep existing compat) (#71) (@github-actions[bot])
• Update Project.toml (#74) (@sebapersson)
• CompatHelper: add new compat entry for Ipopt at version 1, (keep existing compat) (#75) (@github-actions[bot])
• CompatHelper: add new compat entry for Catalyst at version 13, (keep existing compat) (#76) (@github-actions[bot])
• camelCase to snake_case (#77) (@sebapersson)
• Allow user to provide the model as ODESystem (#78) (@sebapersson)
• Add plot recipes for PEtabOptimisationResult (#83) (@TorkelE)
• Catalyst integration cont. (#84) (@sebapersson)
• Catalyst integration cont. (#87) (@sebapersson)
• Add ability to extract model parameters for simulation (#88) (@sebapersson)
• Catalyst integration cont. (#90) (@sebapersson)
• Allow multistart results to be read from disk (#91) (@sebapersson)
• Catalyst integration cont... (#92) (@sebapersson)
• Catalyst integration cont... (#93) (@sebapersson)
• CompatHelper: add new compat entry for Plots at version 1 for package docs, (keep existing compat) (#94) (@github-actions[bot])

Closed issues:

• Record parameter calibration values progress in output. (#64)
• For calibrate_model, by default use random initial guess? (#81)
• Enable extraction of objective function (#82)

v1.4.7

PEtab v1.4.7

Diff since v1.4.6

Merged pull requests:

• Expand SBML support (#62) (@sebapersson)
• Update Project.toml (#63) (@sebapersson)

v1.4.6

PEtab v1.4.6

Diff since v1.4.5

Merged pull requests:

• Expand SBML support (#60) (@sebapersson)

v1.4.5

PEtab v1.4.5

Diff since v1.4.4

Merged pull requests:

• Extend SBML support (#59) (@sebapersson)