Call to use_version() crashes R session #1868
Comments
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I can't reproduce this, so I suspect it's due to something else wonky about your system. |
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I hope it is alright that I post on this issue although it has been closed. Just in case somebody else runs into a similar issue in the future. Following @gaborcsardi suggestion on Mastodon, I called use_version from the command line which allowed me to capture the stack trace: |
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To get the stack trace from C I follow these steps provided by @gaborcsardi:
Below I insert the output from typing bt in step 3): |
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This seems like some binary incompatibility between any two of R, cli and purrr. Unfortunately I still cannot reproduce it with the exact same OS version, R version and package versions. :( A long shot, but can you try reinstalling cli and purrr? First from binaries, and then from source: install.packages(c("cli", "purrr"), type = "source") |
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@LDalby If that does not work, some questions. How did you install R? Do you have other R versions installed? Can you try with Also, did you load any packages using |
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@gaborcsardi Thanks for these suggestions also. I will investigate further and report back. |
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I installed R by going to r-project.org and downloaded the installer. I only have R 4.2.2 installed on this machine. I have now tried to first reinstall {cli} and {purrr} from binaries, then from source neither solved the issue. Starting R from a terminal using My options(
usethis.full_name = "Lars Dalby",
usethis.protocol = "ssh",
usethis.description = list(
"Authors@R" = utils::person(
"Lars", "Dalby",
email = "[email protected]",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-7270-6999")
)
),
usethis.destdir = "~/Users/au206907/git",
usethis.overwrite = TRUE
)My R_MAX_VSIZE=100Gb
GITHUB_PAT=<MY-PAT>
GITLAB_PAT=<MY-PAT>
ODBCSYSINI=/opt/homebrew/etcCan't remember why I have a max size 100GB - I should probably get rid of that 😄 |
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Thanks, and sorry for the many questions. The only thing I can think of is a broken R installation at this point. Can you try running this to see if it crashes as well: purrr::map(letters, function(x) Sys.sleep(0.5), .progress=TRUE)As a possible workaround, I only have drastic ideas at this point:
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No worries, I'm just grateful for you taking the time to investigate this! I can run the code below without crashing. purrr::map(letters, function(x) Sys.sleep(0.5), .progress=TRUE)I've been holding up upgrading to 4.3.1 but I think I will just do that now. Will have to do that at some point anyway. One thing I was thinking though, was that I have several |
If renv is active when you see the crashes, then yes, definitely. Otherwise it is less likely, but still not impossible that somehow you ended up with a broken installation on cli (?). |
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It will crash also without renv being active. |
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I finally got around to upgrading my system. I ran: sudo rm -rf /Applications/R.app
sudo rm -rf /Library/Frameworks/R.frameworkThen installed the latest version of R from r-project.org Installed the packages I use and now |
Calling
use_version(), then selecting one of the options will crash my R session. Before the 💣 it will update the DESCRIPTION file with the new version number, so perhaps it is related to updating the NEWS.md?Has worked like a charm for me for a long time.
I have no clue how to debug this. Any hints would be much welcome!
Created on 2023-06-22 with reprex v2.0.2
Session info
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