N4BiasFieldCorrection Error

[garynanxu]

Hi,
When I tried to run your example of SpatialNormalization.ipynb, I meet an error of :
OSError: No command "N4BiasFieldCorrection" found on host.
Before the error, I have two warning as follows:
191126-14:01:50,536 nipype.workflow WARNING: Storing result file without outputs 191126-14:01:50,536 nipype.workflow WARNING: [Node] Error on "e1b9b01ad8adf76468ee241d2ab49d02"

[poldrack]

are you running it on the VM or natively on your own machine?

…

On Tue, Nov 26, 2019 at 1:14 PM garynanxu ***@***.***> wrote: Hi, When I tried to run your example of SpatialNormalization.ipynb, I meet an error of : OSError: No command "N4BiasFieldCorrection" found on host. Before the error, I have two warning as follows: 191126-14:01:50,536 nipype.workflow WARNING: Storing result file without outputs 191126-14:01:50,536 nipype.workflow WARNING: [Node] Error on "e1b9b01ad8adf76468ee241d2ab49d02" — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#27?email_source=notifications&email_token=AAGUVEGNXGUWFYHUQA3LYRDQVWGT3A5CNFSM4JR5435KYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4H4HQYQQ>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAGUVECIIANV7NLK7SOD323QVWGT3ANCNFSM4JR5435A> .

-- Russell A. Poldrack Albert Ray Lang Professor of Psychology Professor (by courtesy) of Computer Science Bldg. 420, Jordan Hall Stanford University Stanford, CA 94305 [email protected] http://www.poldracklab.org/

[garynanxu]

Hi,
I am running your example on my own machine.

[poldrack]

you need to install ANTS on your local machine (along with all of the others packages described in the Vagrantfile)

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On Tue, Nov 26, 2019 at 1:18 PM garynanxu ***@***.***> wrote: Hi, I am running your example on my own machine. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#27?email_source=notifications&email_token=AAGUVEF5PYMFT4R6HJDMVETQVWHBLA5CNFSM4JR5435KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEFHO57Y#issuecomment-558821119>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAGUVECDSL5ZCXHA4VFD7BDQVWHBLANCNFSM4JR5435A> .

-- Russell A. Poldrack Albert Ray Lang Professor of Psychology Professor (by courtesy) of Computer Science Bldg. 420, Jordan Hall Stanford University Stanford, CA 94305 [email protected] http://www.poldracklab.org/