From a37740270efc7f03716707948e7366a176758413 Mon Sep 17 00:00:00 2001 From: Katherine Eaton Date: Fri, 19 Jul 2024 15:41:37 -0600 Subject: [PATCH] test: add data --- tests/data/alias_key_2024-07-19.json | 403 ++ tests/data/lineage_notes_2024-07-19.txt | 4438 +++++++++++++++++++++++ 2 files changed, 4841 insertions(+) create mode 100644 tests/data/alias_key_2024-07-19.json create mode 100644 tests/data/lineage_notes_2024-07-19.txt diff --git a/tests/data/alias_key_2024-07-19.json b/tests/data/alias_key_2024-07-19.json new file mode 100644 index 0000000..8d253be --- /dev/null +++ b/tests/data/alias_key_2024-07-19.json @@ -0,0 +1,403 @@ +{ + "A": "", + "B": "", + "C": "B.1.1.1", + "D": "B.1.1.25", + "G": "B.1.258.2", + "K": "B.1.1.277", + "L": "B.1.1.10", + "M": "B.1.1.294", + "N": "B.1.1.33", + "P": "B.1.1.28", + "Q": "B.1.1.7", + "R": "B.1.1.316", + "S": "B.1.1.217", + "U": "B.1.177.60", + "V": "B.1.177.54", + "W": "B.1.177.53", + "Y": "B.1.177.52", + "Z": "B.1.177.50", + "AA": "B.1.177.15", + "AB": "B.1.160.16", + "AC": "B.1.1.405", + "AD": "B.1.1.315", + "AE": "B.1.1.306", + "AF": "B.1.1.305", + "AG": "B.1.1.297", + "AH": "B.1.1.241", + "AJ": "B.1.1.240", + "AK": "B.1.1.232", + "AL": "B.1.1.231", + "AM": "B.1.1.216", + "AN": "B.1.1.200", + "AP": "B.1.1.70", + "AQ": "B.1.1.39", + "AS": "B.1.1.317", + "AT": "B.1.1.370", + "AU": "B.1.466.2", + "AV": "B.1.1.482", + "AW": "B.1.1.464", + "AY": "B.1.617.2", + "AZ": "B.1.1.318", + "BA": "B.1.1.529", + "BB": "B.1.621.1", + "BC": "B.1.1.529.1.1.1", + "BD": "B.1.1.529.1.17.2", + "BE": "B.1.1.529.5.3.1", + "BF": "B.1.1.529.5.2.1", + "BG": "B.1.1.529.2.12.1", + "BH": "B.1.1.529.2.38.3", + "BJ": "B.1.1.529.2.10.1", + "BK": "B.1.1.529.5.1.10", + "BL": "B.1.1.529.2.75.1", + "BM": "B.1.1.529.2.75.3", + "BN": "B.1.1.529.2.75.5", + "BP": "B.1.1.529.2.3.16", + "BQ": "B.1.1.529.5.3.1.1.1.1", + "BR": "B.1.1.529.2.75.4", + "BS": "B.1.1.529.2.3.2", + "BT": "B.1.1.529.5.1.21", + "BU": "B.1.1.529.5.2.16", + "BV": "B.1.1.529.5.2.20", + "BW": "B.1.1.529.5.6.2", + "BY": "B.1.1.529.2.75.6", + "BZ": "B.1.1.529.5.2.3", + "CA": "B.1.1.529.2.75.2", + "CB": "B.1.1.529.2.75.9", + "CC": "B.1.1.529.5.3.1.1.1.2", + "CD": "B.1.1.529.5.2.31", + "CE": "B.1.1.529.5.2.33", + "CF": "B.1.1.529.5.2.27", + "CG": "B.1.1.529.5.2.26", + "CH": "B.1.1.529.2.75.3.4.1.1", + "CJ": "B.1.1.529.2.75.3.1.1.1", + "CK": "B.1.1.529.5.2.24", + "CL": "B.1.1.529.5.1.29", + "CM": "B.1.1.529.2.3.20", + "CN": "B.1.1.529.5.2.21", + "CP": "B.1.1.529.5.2.6", + "CQ": "B.1.1.529.5.3.1.4.1.1", + "CR": "B.1.1.529.5.2.18", + "CS": "B.1.1.529.4.1.10", + "CT": "B.1.1.529.5.2.36", + "CU": "B.1.1.529.5.1.26", + "CV": "B.1.1.529.2.75.3.1.1.3", + "CW": "B.1.1.529.5.3.1.1.1.1.1.1.14", + "CY": "B.1.1.529.5.2.7", + "CZ": "B.1.1.529.5.3.1.1.1.1.1.1.1", + "DA": "B.1.1.529.5.2.38", + "DB": "B.1.1.529.5.2.25", + "DC": "B.1.1.529.4.6.5", + "DD": "B.1.1.529.2.3.21", + "DE": "B.1.1.529.5.1.23", + "DF": "B.1.1.529.5.10.1", + "DG": "B.1.1.529.5.2.24.2.1.1", + "DH": "B.1.1.529.5.1.22", + "DJ": "B.1.1.529.5.1.25", + "DK": "B.1.1.529.5.3.1.1.1.1.1.1.7", + "DL": "B.1.1.529.5.1.15", + "DM": "B.1.1.529.5.3.1.1.1.1.1.1.15", + "DN": "B.1.1.529.5.3.1.1.1.1.1.1.5", + "DP": "B.1.1.529.5.3.1.1.1.1.1.1.8", + "DQ": "B.1.1.529.5.2.47", + "DR": "B.1.1.529.5.3.1.1.1.1.1.1.3", + "DS": "B.1.1.529.2.75.5.1.3.1", + "DT": "B.1.1.529.5.3.1.1.1.1.1.1.32", + "DU": "B.1.1.529.5.3.1.1.1.1.1.1.2", + "DV": "B.1.1.529.2.75.3.4.1.1.1.1.1", + "DW": "B.1.1.529.5.3.1.1.2.1", + "DY": "B.1.1.529.5.2.48", + "DZ": "B.1.1.529.5.2.49", + "EA": "B.1.1.529.5.3.1.1.1.1.1.1.52", + "EB": "B.1.1.529.5.1.35", + "EC": "B.1.1.529.5.3.1.1.1.1.1.10.1", + "ED": "B.1.1.529.5.3.1.1.1.1.1.1.18", + "EE": "B.1.1.529.5.3.1.1.1.1.1.1.4", + "EF": "B.1.1.529.5.3.1.1.1.1.1.1.13", + "EG": "XBB.1.9.2", + "EH": "B.1.1.529.5.3.1.1.1.1.1.1.28", + "EJ": "B.1.1.529.2.75.5.1.3.8", + "EK": "XBB.1.5.13", + "EL": "XBB.1.5.14", + "EM": "XBB.1.5.7", + "EN": "B.1.1.529.5.3.1.1.1.1.1.1.46", + "EP": "B.1.1.529.2.75.3.1.1.4", + "EQ": "B.1.1.529.5.1.33", + "ER": "B.1.1.529.5.3.1.1.1.1.1.1.22", + "ES": "B.1.1.529.5.3.1.1.1.1.1.1.65", + "ET": "B.1.1.529.5.3.1.1.1.1.1.1.35", + "EU": "XBB.1.5.26", + "EV": "B.1.1.529.5.3.1.1.1.1.1.1.71", + "EW": "B.1.1.529.5.3.1.1.1.1.1.1.38", + "EY": "B.1.1.529.5.3.1.1.1.1.1.1.13.1.1.1", + "EZ": "B.1.1.529.5.3.1.1.1.1.1.1.43", + "FA": "B.1.1.529.5.3.1.1.1.1.1.1.10", + "FB": "B.1.1.529.5.3.1.1.1.1.1.2.1", + "FC": "B.1.1.529.5.3.1.1.1.1.1.1.72", + "FD": "XBB.1.5.15", + "FE": "XBB.1.18.1", + "FF": "B.1.1.529.5.3.1.1.1.1.1.8.2", + "FG": "XBB.1.5.16", + "FH": "XBB.1.5.17", + "FJ": "B.1.1.529.2.75.3.4.1.1.1.1.19", + "FK": "B.1.1.529.2.75.3.4.1.1.1.1.17", + "FL": "XBB.1.9.1", + "FM": "B.1.1.529.5.3.1.1.1.1.1.1.53", + "FN": "B.1.1.529.5.3.1.1.1.1.1.1.74", + "FP": "XBB.1.11.1", + "FQ": "B.1.1.529.5.3.1.1.1.1.1.1.39", + "FR": "B.1.1.529.2.75.5.1.2.3", + "FS": "B.1.1.529.2.75.3.4.1.1.1.1.12", + "FT": "XBB.1.5.39", + "FU": "XBB.1.16.1", + "FV": "B.1.1.529.2.3.20.8.1.1", + "FW": "XBB.1.28.1", + "FY": "XBB.1.22.1", + "FZ": "XBB.1.5.47", + "GA": "XBB.1.17.1", + "GB": "XBB.1.5.46", + "GC": "XBB.1.5.21", + "GD": "XBB.1.9.3", + "GE": "XBB.2.3.10", + "GF": "XBB.1.5.24", + "GG": "XBB.1.5.38", + "GH": "XBB.2.6.1", + "GJ": "XBB.2.3.3", + "GK": "XBB.1.5.70", + "GL": "XAY.1.1.1", + "GM": "XBB.2.3.6", + "GN": "XBB.1.5.73", + "GP": "B.1.1.529.2.75.3.4.1.1.1.1.11", + "GQ": "B.1.1.529.2.75.3.4.1.1.1.1.3", + "GR": "XBB.1.5.42", + "GS": "XBB.2.3.11", + "GT": "XBC.1.6.1", + "GU": "XBB.1.5.41", + "GV": "XBB.1.5.48", + "GW": "XBB.1.19.1", + "GY": "XBB.1.16.2", + "GZ": "XBB.2.3.4", + "HA": "XBB.1.5.86", + "HB": "XBB.1.34.2", + "HC": "XBB.1.5.44", + "HD": "XBB.1.5.93", + "HE": "XBB.1.18.1.1.1.1", + "HF": "XBB.1.16.13", + "HG": "XBB.2.3.8", + "HH": "XBB.2.3.2", + "HJ": "XBB.1.5.1", + "HK": "XBB.1.9.2.5.1.1", + "HL": "XBB.1.42.2", + "HM": "XBB.1.5.30", + "HN": "XBB.1.9.1.1.5.1", + "HP": "XBB.1.5.55", + "HQ": "XBB.1.5.92", + "HR": "XBB.1.5.77", + "HS": "XBB.1.5.95", + "HT": "XBB.1.5.49", + "HU": "XBB.1.22.2", + "HV": "XBB.1.9.2.5.1.6", + "HW": "XBC.1.6.3", + "HY": "XBB.1.5.100", + "HZ": "XBB.1.5.68", + "JA": "XBB.2.3.13", + "JB": "XBB.1.5.53", + "JC": "XBB.1.41.1", + "JD": "XBB.1.5.102", + "JE": "XBB.2.3.3.1.2.1", + "JF": "XBB.1.16.6", + "JG": "XBB.1.9.2.5.1.3", + "JH": "B.1.1.529.5.3.1.1.1.1.1.2.2", + "JJ": "XBB.1.9.2.5.1.4", + "JK": "XBB.1.5.3", + "JL": "B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.2", + "JM": "XBB.1.16.15", + "JN": "B.1.1.529.2.86.1", + "JP": "B.1.1.529.2.75.3.4.1.1.1.1.31", + "JQ": "B.1.1.529.2.86.3", + "JR": "XBB.1.9.2.5.1.11", + "JS": "XBB.2.3.15", + "JT": "XBC.1.6.6", + "JU": "XBB.2.3.12", + "JV": "B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2", + "JW": "XBB.1.41.3", + "JY": "XBB.2.3.19", + "JZ": "XBB.1.5.107", + "KA": "XBB.1.5.103", + "KB": "XBB.1.9.2.5.1.8", + "KC": "XBB.1.9.1.1.5.2", + "KD": "XBC.1.3.1", + "KE": "XBB.1.19.1.5.1.1", + "KF": "XBB.1.9.1.15.1.1", + "KG": "B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5", + "KH": "XBB.2.3.3.1.2.1.1.1.1", + "KJ": "XBB.1.16.32", + "KK": "XBB.1.5.102.1.1.8", + "KL": "XBB.1.9.2.5.1.6.1.6.1", + "KM": "XBB.1.5.4", + "KN": "XBB.1.5.70.1.10.1", + "KP": "B.1.1.529.2.86.1.1.11.1", + "KQ": "B.1.1.529.2.86.1.1.4.3", + "KR": "B.1.1.529.2.86.1.1.1.5", + "KS": "B.1.1.529.2.86.1.1.13.1", + "KT": "XBB.2.3.10.1.2.1", + "KU": "B.1.1.529.2.86.1.1.30.1", + "KV": "B.1.1.529.2.86.1.1.4.5", + "KW": "B.1.1.529.2.86.1.1.28.1", + "KY": "B.1.1.529.2.86.1.1.8.2", + "KZ": "B.1.1.529.2.86.1.1.1.6", + "LA": "B.1.1.529.2.86.1.1.16.2", + "LB": "B.1.1.529.2.86.1.1.9.2", + "LC": "B.1.1.529.2.86.1.1.1.7", + "LD": "B.1.1.529.2.86.1.1.48.1", + "LE": "B.1.1.529.2.86.1.1.4.7", + "LF": "B.1.1.529.2.86.1.1.16.1", + "LG": "B.1.1.529.2.86.1.1.28.1.1.1.1", + "LH": "B.1.1.529.2.86.1.1.18.4", + "LJ": "B.1.1.529.2.86.1.1.51.1", + "LK": "B.1.1.529.2.86.1.1.7.5", + "LL": "B.1.1.529.2.86.1.1.4.2", + "LM": "B.1.1.529.2.86.1.1.25.1", + "LN": "B.1.1.529.2.86.1.1.53.1", + "LP": "B.1.1.529.2.86.1.1.11.1.1.1.3", + "LQ": "B.1.1.529.2.86.1.1.18.1", + "LR": "B.1.1.529.2.86.1.1.58.2", + "LS": "B.1.1.529.2.86.1.1.18.5", + "LT": "B.1.1.529.2.86.1.1.1.3", + "LU": "B.1.1.529.2.86.1.1.15.1", + "LV": "B.1.1.529.2.86.6", + "LW": "B.1.1.529.2.86.1.1.11.1.3.2.3", + "LY": "B.1.1.529.2.86.1.1.18.6", + "LZ": "B.1.1.529.2.86.1.1.18.2", + "MA": "B.1.1.529.2.86.1.1.18.3", + "MB": "B.1.1.529.2.86.1.1.49.1", + "MC": "B.1.1.529.2.86.1.1.11.1.3.1.1", + "MD": "B.1.1.529.2.86.1.1.64.1", + "ME": "B.1.1.529.2.86.1.1.50.2", + "MF": "B.1.1.529.2.86.1.1.65.1", + "MG": "B.1.1.529.2.86.1.1.11.1.1.1.1", + "MH": "B.1.1.529.2.86.1.1.9.2.1.3.2", + "MJ": "B.1.1.529.2.86.1.1.29.1", + "MK": "B.1.1.529.2.86.1.1.11.1.3.1.6", + "ML": "B.1.1.529.2.86.1.1.11.1.3.3.3", + "MM": "B.1.1.529.2.86.1.1.11.1.3.1.4", + "MN": "B.1.1.529.2.86.1.1.18.7", + "XA": ["B.1.1.7","B.1.177"], + "XB": ["B.1.634","B.1.631"], + "XC": ["AY.29","B.1.1.7"], + "XD": ["B.1.617.2*","BA.1*"], + "XE": ["BA.1*","BA.2*"], + "XF": ["B.1.617.2*","BA.1*"], + "XG": ["BA.1*","BA.2*"], + "XH": ["BA.1*","BA.2*"], + "XJ": ["BA.1*","BA.2*"], + "XK": ["BA.1*","BA.2*"], + "XL": ["BA.1*","BA.2*"], + "XM": ["BA.1.1*","BA.2*"], + "XN": ["BA.1*","BA.2*"], + "XP": ["BA.1.1*","BA.2*"], + "XQ": ["BA.1.1*","BA.2*"], + "XR": ["BA.1.1*","BA.2*"], + "XS": ["B.1.617.2*","BA.1.1*"], + "XT": ["BA.2*","BA.1*"], + "XU": ["BA.1*","BA.2*"], + "XV": ["BA.1*","BA.2*"], + "XW": ["BA.1*","BA.2*"], + "XY": ["BA.1*","BA.2*"], + "XZ": ["BA.2*","BA.1*"], + "XAA": ["BA.1*","BA.2*"], + "XAB": ["BA.1*","BA.2*"], + "XAC": ["BA.2*","BA.1*","BA.2*"], + "XAD": ["BA.2*","BA.1*"], + "XAE": ["BA.2*","BA.1*"], + "XAF": ["BA.1*","BA.2*"], + "XAG": ["BA.1*","BA.2*"], + "XAH": ["BA.2*","BA.1*"], + "XAJ": ["BA.2.12.1*","BA.4*"], + "XAK": ["BA.2*","BA.1*","BA.2*"], + "XAL": ["BA.1*","BA.2*"], + "XAM": ["BA.1.1","BA.2.9"], + "XAN": ["BA.2*","BA.5.1"], + "XAP": ["BA.2*","BA.1*"], + "XAQ": ["BA.1*","BA.2*"], + "XAR": ["BA.1*","BA.2*"], + "XAS": ["BA.5*","BA.2*"], + "XAT": ["BA.2.3.13","BA.1*"], + "XAU": ["BA.1.1*","BA.2.9*"], + "XAV": ["BA.2*","BA.5*"], + "XAW": ["BA.2*","AY.122"], + "XAY": ["BA.2*","AY.45","BA.2*","AY.45","BA.2*"], + "XAZ": ["BA.2.5","BA.5","BA.2.5"], + "XBA": ["BA.2*","AY.45","BA.2*","AY.45","BA.2*"], + "XBB": ["BJ.1","BM.1.1.1"], + "XBC": ["BA.2*","B.1.617.2","BA.2*","B.1.617.2"], + "XBD": ["BA.2.75.2","BF.5"], + "XBE": ["BA.5.2","BE.4.1"], + "XBF": ["BA.5.2*","CJ.1"], + "XBG": ["BA.2.76","BA.5.2"], + "XBH": ["BA.2.3.17","BA.2.75.2"], + "XBJ": ["BA.2.3.20","BA.5.2"], + "XBK": ["BA.5.2","CJ.1"], + "XBL": ["XBB.1.5.57","BA.2.75*","XBB.1.5.57"], + "XBM": ["BA.2.76","BF.3"], + "XBN": ["BA.2.75","XBB.3"], + "XBP": ["BA.2.75*","BQ.1*"], + "XBQ": ["BA.5.2","CJ.1"], + "XBR": ["BA.2.75","BQ.1"], + "XBS": ["BA.2.75","BQ.1"], + "XBT": ["BA.5.2.34","BA.2.75","BA.5.2.34"], + "XBU": ["BA.2.75.3","BQ.1","BA.2.75.3"], + "XBV": ["CR.1","XBB.1"], + "XBW": ["XBB.1.5","BQ.1.14"], + "XBY": ["BR.2.1","XBF"], + "XBZ": ["BA.5.2*","EF.1.3"], + "XCA": ["BA.2.75*","BQ.1*"], + "XCB": ["BF.31.1","BQ.1.10*"], + "XCC": ["CH.1.1.1","XBB.1.9.1"], + "XCD": ["XBB.1*","BQ.1.1.25*"], + "XCE": ["BQ.1*","FY.1"], + "XCF": ["XBB*","FE.1"], + "XCG": ["BA.5.2*","XBB.1"], + "XCH": ["GK.1.3","XBB.1.9*","GK.1.3"], + "XCJ": ["GM.2","FP.1","GM.2"], + "XCK": ["FL.1.5.1","BQ.1.2.2"], + "XCL": ["XBB*","GK.2.1.1"], + "XCM": ["XBB.2.3","DV.7.1"], + "XCN": ["FR.1.1","EG.5.1.1"], + "XCP": ["EG.5.1.10","JD.1.1"], + "XCQ": ["XBB.2.3","XBB.1.5"], + "XCR": ["GK.1.1.1","FU.1.1.1"], + "XCS": ["GK.1.9","XBB.1.16.25"], + "XCT": ["JG.4","DV.7.1","JG.4"], + "XCU": ["XBC.1.7.1","FL.23.2.1"], + "XCV": ["XBB.1.16.19","EG.5.1.3","XBB.1.16.19"], + "XCW": ["XBB.2.3.20","XBB.1.16.15"], + "XCY": ["EG.5.1.3","GK.4"], + "XCZ": ["EG.5.1.1","GK.1.1"], + "XDA": ["XBB.1.16","HN.5"], + "XDB": ["XBB.1.16.19","XBB"], + "XDC": ["HK.3","XBB.1.16"], + "XDD": ["EG.5.1.1","JN.1","EG.5.1.1"], + "XDE": ["GW.5.1","FL.13.4"], + "XDF": ["XBB*","EG.5.1.3"], + "XDG": ["FL.37","EG.5.2.4"], + "XDH": ["BN.1.2.8","XBB.1.9.1"], + "XDJ": ["XBB.1.16.6","HK.3.1"], + "XDK": ["XBB.1.16.11","JN.1.1.1"], + "XDL": ["EG.5.1.1","XBB*"], + "XDM": ["XDA","GW.5","XDA"], + "XDN": ["JN.1.1","JD.1*"], + "XDP": ["JN.1.4","FL.15"], + "XDQ": ["BA.2.86.1","FL.15.1.1"], + "XDR": ["JD.1.1.1","JN.1.1"], + "XDS": ["EG.5.1.3","JN.3.2.1","EG.5.1.3"], + "XDT": ["BA.2.86.4","GK.1"], + "XDU": ["XBB.1.16","BA.2.86.1"], + "XDV": ["XDE","JN.1","XDE","JN.1"], + "XDW": ["JN.2","XDA"], + "XDY": ["LB.1.2.1","KP.3.2"], + "XDZ": ["JG.3","JN.1.1.10"], + "XEA": ["JN.1.63.1","EG.5"], + "XEB": ["FL.15","JN.1.4","FL.15"] +} + diff --git a/tests/data/lineage_notes_2024-07-19.txt b/tests/data/lineage_notes_2024-07-19.txt new file mode 100644 index 0000000..ab6158b --- /dev/null +++ b/tests/data/lineage_notes_2024-07-19.txt @@ -0,0 +1,4438 @@ +Lineage Description +A One of the two original haplotypes of the pandemic (A and B). Many sequences originating from China and many global exports; including to South East Asia Japan South Korea Australia the USA and Europe represented in this lineage +A.1 USA lineage +A.2 Mostly Spanish lineage now includes South and Central American sequences, other European countries and Kazakhstan. +A.2.2 Australian lineage +A.2.3 Scottish lineage +A.2.4 Panama lineage +A.2.5 Central American/ USA lineage +A.2.5.1 Costa Rica lineage, from #33 +A.2.5.2 Predominantly Italy lineage +A.2.5.3 Predominantly Ecuador lineage, from #168 +A.3 USA lineage +A.4 USA lineage +A.5 A lineage with a lot of representation from Spanish-speaking countries. A Spanish/ South-American lineage, but now with sequences from an outbreak in Scotland. Also now includes what was previously A.10. +A.6 Thai lineage +A.7 Indian lineage +A.9 Indian lineage +A.11 Ghana/ Senegal lineage +A.12 Sierra Leone lineage +A.15 Sweden/ Denmark lineage +A.16 Japanese lineage +A.17 French lineage +A.18 Cote d'Ivoire/ Burkina Faso lineage +A.19 Cote d'Ivoire/ Burkina Faso lineage +A.21 Mali/ Burkina Faso lineage +A.22 UAE lineage +A.23 Ugandan lineage +A.23.1 International lineage with a number of variants of potential biological concern, including 681R +A.24 South Korean lineage +A.25 Ugandan lineage +A.26 UK lineage +A.27 Mayotte/ European cluster with 18 changes in the long branch leading to this cluster, including 7 NS changes in the spike (L18F, L452R, N501Y, A653V, H655Y, D796Y, G1219V), on a 614D background, from #11. +A.28 This lineage has 9 changes on its basal branch, including the 69-70del, N501T (not Y) and H655Y. (This variant is picked up by the qPCR S drop), from #12 +A.29 Lineage circulating in multiple countries, from #78 +A.30 Lineage in several countries, associated with travel from Tanzania, from #138 +B One of the two original haplotypes of the pandemic(and first to be discovered) +B.1 A large European lineage the origin of which roughly corresponds to the Northern Italian outbreak early in 2020. +B.1.1 European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC` +B.1.1.1 England +C.1 Alias of B.1.1.1.1, South Africa, from #2 +C.1.1 Alias of B.1.1.1.1.1, Mozambique +C.1.2 Alias of B.1.1.1.1.2, mostly South Africa, from #139 +C.2 Alias of B.1.1.1.2, South Africa and some European +C.2.1 Alias of B.1.1.1.2.1, Aruba and Curacao, from #32 +C.3 Alias of B.1.1.1.3, England +C.4 Alias of B.1.1.1.4, Peruvian +C.5 Alias of B.1.1.1.5, Switzerland and Luxembourg +C.6 Alias of B.1.1.1.6, South Africa +C.7 Alias of B.1.1.1.7, Denmark +C.8 Alias of B.1.1.1.8, Canada and DRC +C.9 Alias of B.1.1.1.9, South Africa +C.10 Alias of B.1.1.1.10, Poland +C.11 Alias of B.1.1.1.11 +C.12 Alias of B.1.1.1.12, New Zealand +C.13 Alias of B.1.1.1.13, Peruvian +C.14 Alias of B.1.1.1.14, Peruvian +C.16 Alias of B.1.1.1.16, Portugal originally, now pan-european +C.17 Alias of B.1.1.1.17, Egypt +C.18 Alias of B.1.1.1.18, Italy +C.19 Alias of B.1.1.1.19, Denmark +C.20 Alias of B.1.1.1.20, Switzerland +C.21 Alias of B.1.1.1.21, Spain +C.22 Alias of B.1.1.1.22, Argentina +C.23 Alias of B.1.1.1.23, Mainly USA +C.25 Alias of B.1.1.1.25, Peru +C.26 Alias of B.1.1.1.26, Chile +C.27 Alias of B.1.1.1.27, England +C.28 Alias of B.1.1.1.28, USA +C.29 Alias of B.1.1.1.29, Chile +C.30 Alias of B.1.1.1.30, England +C.30.1 Alias of B.1.1.1.30.1, Denmark +C.31 Alias of B.1.1.1.31, USA +C.32 Alias of B.1.1.1.32, Peru +C.33 Alias of B.1.1.1.33, Peru +C.34 Alias of B.1.1.1.34, Canada +C.35 Alias of B.1.1.1.35, Central Europe, England +C.36 Alias of B.1.1.1.36, Egypt mainly and other countries +C.36.1 Alias of B.1.1.1.36.1, Canada +C.36.2 Alias of B.1.1.1.36.2, Switzerland +C.36.3 Alias of B.1.1.1.36.3, Europe and USA lineage, from #80 +C.36.3.1 Alias of B.1.1.1.36.3.1, Europe and USA lineage, from #80 +C.37 Alias of B.1.1.1.37, lineage in Peru, Chile, USA and Germany, from #52 +C.37.1 Alias of B.1.1.1.37.1, lineage outside of South America, from #158 +C.38 Alias of B.1.1.1.38, lineage in multiple countries, formally B.1.1.527, from #150 +C.39 Alias of B.1.1.1.39, Chile and Peru lineage, from #178 +C.40 Alias of B.1.1.1.40, Peru lineage, from #203 +B.1.1.3 England Lineage +B.1.1.4 English lineage +B.1.1.5 European lineage +B.1.1.7 UK lineage of concern, associated with the N501Y mutation. More information can be found at cov-lineages.org/global_report.html +Q.1 Alias of B.1.1.7.1, predominantly Lithuania lineage, from #39 +Q.2 Alias of B.1.1.7.2, Italy lineage, from #79 +Q.3 Alias of B.1.1.7.3, USA lineage, from #92 +Q.4 Alias of B.1.1.7.4, lineage in multiple countries with spike H681R, from #176 +Q.5 Alias of B.1.1.7.5, Israel lineage, from #165 +Q.6 Alias of B.1.1.7.6, France lineage, from #183 +Q.7 Alias of B.1.1.7.7, predominantly France lineage, from #183 +Q.8 Alias of B.1.1.7.8, Sri Lanka lineage, from #197 +B.1.1.8 England +B.1.1.10 European lineage +L.1 Alias of B.1.1.10.1, Canadian lineage +L.2 Alias of B.1.1.10.2, Netherlands lineage +L.3 Alias of B.1.1.10.3, Nigerian/ European lineage with long branch from B.1.1.10 +L.4 USA lineage, alias of B.1.1.10.4 +B.1.1.12 England +B.1.1.13 UK +B.1.1.14 Scotland +B.1.1.15 UK/ Luxembourg lineage +B.1.1.16 Wales with European base +B.1.1.17 Icelandic +B.1.1.25 Bangladesh Lineage +D.2 Alias of B.1.1.25.2, Australia +D.3 Alias of B.1.1.25.3, Australia +D.4 Alias of B.1.1.25.4, Irish/ Northern Irish lineage +D.5 Alias of B.1.1.25.5, Swedish/ Denmark lineage +B.1.1.26 USA Lineage +B.1.1.27 Oman Lineage, some UAE +B.1.1.28 Brazil mostly, absorbed B.1.1.94 and B.1.1.143 +P.1 Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586, from #77 +P.1.1 Alias of B.1.1.28.1.1, European lineage in Italy and Germany, from #28 +P.1.2 Alias of B.1.1.28.1.2, Netherlands/Brazil lineage. Imported into Netherlands, likely with local transmission here and continued circulation within and/or reintroduction into Brazil, from #56 +P.1.3 Alias of B.1.1.28.1.3, Brazil lineage, from #141 +P.1.4 Alias of B.1.1.28.1.4, Brazil lineage, from #141 +P.1.5 Alias of B.1.1.28.1.5, Brazil lineage, from #141 +P.1.6 Alias of B.1.1.28.1.6, Brazil lineage, from #141 +P.1.7 Alias of B.1.1.28.1.7, Brazil lineage, from #141 +P.1.7.1 Alias of B.1.1.28.1.7.1, Peru lineage, from #326 +P.1.8 Alias of B.1.1.28.1.8, Brazil lineage, from #164 +P.1.9 Alias of B.1.1.28.1.9, Brazil lineage, from #174 +P.1.10 Alias of B.1.1.28.1.10, predominantly USA lineage, from #179 +P.1.10.1 Alias of B.1.1.28.1.10.1, Aruba lineage, from #179 +P.1.10.2 Alias of B.1.1.28.1.10.2, Mexico lineage, from #179 +P.1.11 Alias of B.1.1.28.1.11, Brazil lineage, from #164 +P.1.12 Alias of B.1.1.28.1.12, predominantly Peru lineage, from #212 +P.1.12.1 Sublineage of P.1.12 reported predominantly from Peru and USA, from #282 +P.1.13 Alias of B.1.1.28.1.13, USA lineage, from #231 +P.1.14 Alias of B.1.1.28.1.14, predominantly Canada lineage, from #231 +P.1.15 Alias of B.1.1.28.1.15, predominantly Chile lineage, from #231 +P.1.16 Alias of B.1.1.28.1.16, predominantly Belgium lineage also in other countries in Europe, from #231 +P.1.17 Alias of B.1.1.28.1.17, predominantly USA and Mexico lineage, from #231 +P.1.17.1 Alias of B.1.1.28.1.17.1, predominantly in Luxembourg, from #231 +P.2 Alias of B.1.1.28.2, Brazilian lineage +P.3 Alias of B.1.1.28.3, Lineage predominantly in the Philippines with spike mutations E484K, N501Y, P681H, 141-143del. Described in Tablizo et al 2021: https://www.medrxiv.org/content/10.1101/2021.03.03.21252812v2, from #27 +P.4 Alias of B.1.1.28.4, Brazil lineage, from #68 +P.5 Alias of B.1.1.28.5, Brazil lineage, from #86 +P.6 Alias of B.1.1.28.6, Uruguay lineage, from #148 +P.7 Alias of B.1.1.28.7, Brazil lineage, from #29 +B.1.1.29 Wales lineage, formerly temporarily assigned B.1.1.439 due to an error, from #50 +B.1.1.30 Lithuanian +B.1.1.31 Russian lineage +B.1.1.33 Brazilian +N.1 Alias of B.1.1.33.1, US +N.2 Alias of B.1.1.33.2, European lineage +N.3 Alias of B.1.1.33.3, Argentinian +N.4 Alias of B.1.1.33.4, Chilean +N.5 Alias of B.1.1.33.5, Argentinian +N.6 Alias of B.1.1.33.6, Chilean +N.7 Alias of B.1.1.33.7, Uruguay +N.8 Alias of B.1.1.33.8, Kenyan +N.9 Alias of B.1.1.33.9, Brazilian lineage, from #26 +N.10 Alias of B.1.1.33.10, Brazilian lineage described in https://virological.org/t/identification-of-a-new-b-1-1-33-sars-cov-2-variant-of-interest-voi-circulating-in-brazil-with-mutation-e484k-and-multiple-deletions-in-the-amino-n-terminal-domain-of-the-spike-protein/675, from #40 +B.1.1.34 South African lineage +B.1.1.37 UK lineage +B.1.1.38 Wales +B.1.1.39 Mostly Switzerland with lots of other countries +AQ.1 Alias of B.1.1.39.1, Finland lineage +AQ.2 Alias of B.1.1.39.2, Denmark lineage +B.1.1.40 South African lineage +B.1.1.41 England lineage +B.1.1.43 Scottish lineage +B.1.1.44 Pan-European, big scottish section +B.1.1.45 UK +B.1.1.46 Mostly India +B.1.1.47 Switzerland and other Northern Europe +B.1.1.48 Japan +B.1.1.49 Wales +B.1.1.50 Israel and Palestine +B.1.1.51 UK +B.1.1.52 South Africa +B.1.1.53 South Africa +B.1.1.54 South African Lineage +B.1.1.55 English lineage +B.1.1.56 South African lineage +B.1.1.57 South African lineage, a few English sequences, one Zimbabwe +B.1.1.58 European lineage +B.1.1.59 UK lineage +B.1.1.61 USA lineage +B.1.1.62 South African lineage +B.1.1.63 Hong Kong lineage +B.1.1.67 England and South Africa +B.1.1.70 European Lineage +AP.1 Alias of B.1.1.70.1, Wales lineage +B.1.1.71 Dutch, Central Europe +B.1.1.72 USA lineage +B.1.1.74 NI & Ireland Lineage +B.1.1.75 Belgian lineage +B.1.1.77 USA Lineage +B.1.1.82 Wales lineage +B.1.1.83 Northern Irish lineage +B.1.1.84 South African +B.1.1.86 UK lineage +B.1.1.87 Hungarian lineage +B.1.1.88 Portugal lineage +B.1.1.89 England +B.1.1.90 Sweden and Denmark lineage +B.1.1.91 Sweden +B.1.1.92 English lineage +B.1.1.93 USA Lineage +B.1.1.95 English lineage +B.1.1.97 England +B.1.1.98 USA lineage +B.1.1.99 Mostly South Africa +B.1.1.100 Denmark lineage +B.1.1.101 Indian lineage +B.1.1.107 England +B.1.1.109 UK lineage +B.1.1.110 Peru lineage +B.1.1.111 African lineage (Zambia, Zimbabwe) +B.1.1.112 Netherlands +B.1.1.113 Western USA +B.1.1.114 Wales +B.1.1.115 UK lineage, now contains former B.1.1.235 +B.1.1.116 USA lineage +B.1.1.117 South African some Argentina, now contains B.1.1.252 +B.1.1.118 USA Lineage (TX) +B.1.1.119 Northern Ireland lineage +B.1.1.120 UK lineage +B.1.1.121 Canadian lineage +B.1.1.122 Netherlands +B.1.1.123 UK lineage +B.1.1.125 UK lineage +B.1.1.127 Russian lineage +B.1.1.128 USA lineage +B.1.1.129 Russian lineage +B.1.1.130 England +B.1.1.132 USA Lineage +B.1.1.133 UAE/ European lineage +B.1.1.134 UK +B.1.1.135 US +B.1.1.136 Australian lineage +B.1.1.137 UK lineage +B.1.1.138 UK lineage +B.1.1.139 USA +B.1.1.141 Russian, Latvian, Netherlands +B.1.1.142 Australian lineage +B.1.1.144 Swiss lineage +B.1.1.145 UK lineage +B.1.1.147 England +B.1.1.148 USA lineage +B.1.1.149 English Lineage +B.1.1.152 Russian +B.1.1.153 Northern European Lineage +B.1.1.154 UK lineage +B.1.1.155 English +B.1.1.157 Canadian lineage +B.1.1.158 USA lineage +B.1.1.159 European lineage +B.1.1.160 Northern Ireland lineage +B.1.1.161 Saudi lineage +B.1.1.162 England, Russia, Latvia +B.1.1.163 Russian lineage +B.1.1.164 UK +B.1.1.165 England +B.1.1.166 UK lineage +B.1.1.168 UK lineage +B.1.1.169 USA lineage +B.1.1.170 UK/Denmark lineage +B.1.1.171 UK lineage +B.1.1.172 USA +B.1.1.174 USA lineage +B.1.1.175 Bangladesh +B.1.1.176 Canadian lineage +B.1.1.177 Texas +B.1.1.178 England +B.1.1.180 USA lineage +B.1.1.181 Used to be just Turkey, now lots of Canadian +B.1.1.182 USA +B.1.1.184 Russia, some B.1.1.129 +B.1.1.185 Netherlands lineage +B.1.1.186 Southern USA +B.1.1.187 UK and italy +B.1.1.189 European lineage +B.1.1.190 Wales lineage +B.1.1.191 Denmark +B.1.1.192 USA +B.1.1.193 England +B.1.1.194 England +B.1.1.196 UK lineage +B.1.1.197 UK lineage +B.1.1.198 UK/ Luxembourg lineage +B.1.1.200 UK +AN.1 Alias of B.1.1.200.1, Sweden and Netherlands, from B.1.1.130 +B.1.1.201 India and Singapore and Texas +B.1.1.202 Italy +B.1.1.203 England and Ecuador +B.1.1.204 UK lineage +B.1.1.205 USA lineage +B.1.1.207 USA +B.1.1.208 UK +B.1.1.209 Netherlands +B.1.1.210 USA (TX) +B.1.1.213 England +B.1.1.214 Japan +B.1.1.216 Predominantly Indian lineage with exports elsewhere +AM.1 Alias of B.1.1.216.1, Portugal lineage +AM.2 Alias of B.1.1.216.2, Canadian lineage +AM.3 Alias of B.1.1.216.3, UK lineage +AM.4 Alias of B.1.1.216.4, Canadian lineage +B.1.1.217 UK lineage +S.1 Alias of B.1.1.217.1, Latvian lineage, previously I.1 +B.1.1.218 European lineage +B.1.1.219 Northern Europe (UK, Denmark, Norway, Sweden) +B.1.1.220 UK lineage +B.1.1.221 Belgian lineage +B.1.1.222 USA/Mexico +B.1.1.224 Denmark (some German) +B.1.1.225 USA +B.1.1.226 USA lineage +B.1.1.227 England +B.1.1.228 USA (WA) +B.1.1.229 Italy +B.1.1.230 USA +B.1.1.231 USA lineage +AL.1 Alias of B.1.1.231.1, Canada lineage +B.1.1.232 Northern Europe (UK, Germany, Denmark, Belgium, NL) +AK.1 Alias of B.1.1.232.1, UK lineage +AK.2 Alias of B.1.1.232.2, German lineage +B.1.1.234 England, Ireland, Northern Ireland, Northern Europe +B.1.1.236 UK +B.1.1.237 Wales +B.1.1.239 USA lineage +B.1.1.241 European lineage +AH.1 Alias of B.1.1.241.1, Swiss Lineage +AH.2 Alias of B.1.1.241.2, French Lineage +AH.3 Alias of B.1.1.241.3, Finnish Lineage +B.1.1.240 UK lineage +AJ.1 Alias of B.1.1.240.1, Portugal lineage +B.1.1.242 Gambia and Switzerland +B.1.1.243 Eastern Europe, Central Europe, UK +B.1.1.244 USA lineage +B.1.1.249 Welsh Lineage +B.1.1.251 UK and US +B.1.1.253 UK +B.1.1.254 Mostly South Africa +B.1.1.255 UK lineage +B.1.1.256 UK lineage +B.1.1.258 USA (TX) +B.1.1.261 Swedish/ Danish/ Faroe Islands lineage +B.1.1.257 Mostly UK lineage with other northern european plus one singapore +B.1.1.262 UK lineage +B.1.1.263 UAE lineage (~95%) +B.1.1.265 USA lineage +B.1.1.266 Czech lineage +B.1.1.267 Irish lineage +B.1.1.268 USA lineage +B.1.1.269 European lineage +B.1.1.270 UK lineage +B.1.1.271 German and Austrian lineage +B.1.1.272 Denmark +B.1.1.273 South african lineage, previously part of B.1.1.56 +B.1.1.274 England, Thailand, Russia, USA +B.1.1.275 DRC with some UAE and England +B.1.1.277 European lineage +K.1 Alias of B.1.1.277.1, South Korean lineage +K.2 Alias of B.1.1.277.2, Russian lineage +K.3 Alias of B.1.1.277.3, Norway lineage +B.1.1.279 English Lineage +B.1.1.280 Lithuanian lineage +B.1.1.282 Netherlands lineage +B.1.1.283 Japan +B.1.1.284 Japan +B.1.1.285 Japan/ USA lineage +B.1.1.286 UK +B.1.1.288 Danish Lineage +B.1.1.289 UK lineage +B.1.1.290 USA lineage +B.1.1.291 USA Lineage +B.1.1.294 Russian and UK lineage +M.1 Alias of B.1.1.294.1, Israel +M.2 Alias of B.1.1.294.2, Swiss Lineage +M.3 Alias of B.1.1.294.3, English Lineage +B.1.1.296 UK lineage +B.1.1.297 Central Europe lineage +AG.1 Alias of B.1.1.297.1, Netherlands lineage +B.1.1.298 Denmark Lineage +B.1.1.299 UK lineage +B.1.1.300 UK lineage +B.1.1.301 UK lineage +B.1.1.302 Swedish lineage +B.1.1.303 UK +B.1.1.304 UK/USA lineage +B.1.1.305 Pan European +AF.1 Alias of B.1.1.305.1, Switzerland +B.1.1.306 Big indian lineage, exports to Zambia, Bahrain and Canada +AE.1 Alias of B.1.1.306.1, Zambian +AE.2 Alias of B.1.1.306.2, Bahrain +AE.3 Alias of B.1.1.306.3, Zambia and Rwanda +AE.4 Alias of B.1.1.306.4, Bahrain +AE.5 Alias of B.1.1.306.5, Zambia +AE.6 Alias of B.1.1.306.6, Bahrain +AE.7 Alias of B.1.1.306.7, Bahrain +AE.8 Alias of B.1.1.306.8, Canada lineage +B.1.1.307 UK lineage +B.1.1.308 UK +B.1.1.309 Now all England, was USA, so probably split from something +B.1.1.310 Northern Irish with English root +B.1.1.311 Huge UK lineage +B.1.1.312 Jordan lineage +B.1.1.315 Previously D.1, UK/ UAE lineage +AD.1 Alias of B.1.1.315.1, Denmark lineage +AD.2 Alias of B.1.1.315.2, UK lineage +AD.2.1 Alias of B.1.1.315.2.1, Lithuanian lineage +B.1.1.316 International lineage with spike mutation Q677H, parent of lineage R.1 and R.2 which have additional mutations including E484K mutation, from #14 +R.1 Alias of B.1.1.316.1, Sublineage of B.1.1.316 with 3 additional spike mutations, circulating in a number of countries, from #17 +R.2 Alias of B.1.1.316.2, Sublineage of B.1.1.316 with E484K, from #18 +B.1.1.317 Russian lineage, from #53 +AS.1 Alias of B.1.1.317.1, UK lineage +AS.2 Alias of B.1.1.317.2, UK lineage +B.1.1.318 Lineage circulating in multiple countries with a number of variants of concern (Spike D614G, Spike D796H, Spike E484K, Spike P681H, Spike T95I, Spike Y144del), from #15 +AZ.1 Alias of B.1.1.318.1, Canada lineage, from #171 +AZ.2 Alias of B.1.1.318.2, predominantly Greece lineage, from #171 +AZ.2.1 Alias of B.1.1.318.2.1, Switzerland lineage, from #171 +AZ.3 Alias of B.1.1.318.3, USA lineage, from #171 +AZ.4 Alias of B.1.1.318.4, Ireland lineage, from #171 +AZ.5 Alias of B.1.1.318.5, Mauritius lineage, from #171 +AZ.6 Alias of B.1.1.318.6, Canada lineage, from #171 +B.1.1.319 Russian/Serbian Lineage +B.1.1.320 USA lineage +B.1.1.322 Mexico/Southwest USA +B.1.1.323 Northern Europe, split from B.1.1.257 +B.1.1.324 Chilean Lineage +B.1.1.325 Eastern Europe plus Belgium and Denmark +B.1.1.326 Indian Lineage +B.1.1.327 Swiss Lineage +B.1.1.328 Costa Rica and Florida +B.1.1.329 Pan-US +B.1.1.330 Chinese Lineage +B.1.1.331 Austrian lineage +B.1.1.332 Brazilian Lineage +B.1.1.333 Norwegian Lineage +B.1.1.334 USA and Mexico +B.1.1.335 USA and Canada +B.1.1.336 Russian lineage +B.1.1.337 US +B.1.1.338 German lineage +B.1.1.339 UAE and England +B.1.1.340 Indian Lineage +B.1.1.341 UK lineage +B.1.1.342 USA +B.1.1.343 Canadian lineage +B.1.1.344 Mexico, Texas +B.1.1.345 USA lineage +B.1.1.346 Denmark lineage +B.1.1.347 Central Europe +B.1.1.348 South America & USA +B.1.1.349 Russia, one "Congo" +B.1.1.350 Latvian lineage +B.1.1.351 USA, England, Finland, Denmark +B.1.1.352 USA lineage +B.1.1.353 UAE, Israel, Australia +B.1.1.354 Singapore, malaysia, India, UAE, England +B.1.1.355 England, Northern Europe +B.1.1.356 Texas +B.1.1.357 USA lineage +B.1.1.358 USA +B.1.1.359 Ghana and Denmark +B.1.1.360 Wales +B.1.1.361 England +B.1.1.362 USA +B.1.1.363 Wales +B.1.1.364 Russia, S Korea, England +B.1.1.365 England +B.1.1.366 UAE +B.1.1.367 USA +B.1.1.368 USA and Canada +B.1.1.369 England +B.1.1.370 England, USA, Russia, Germany +AT.1 Alias of B.1.1.370.1, Russia and Finland lineage, from #47 +B.1.1.371 Saudi Arabia to Romania to Western Europe, contains B.1.1.161 at the base +B.1.1.372 England +B.1.1.373 Russia, split from B.1.1.31 +B.1.1.374 Balkans, Finland +B.1.1.375 Mozambique, was C.1.1 +B.1.1.376 USA (California) +B.1.1.377 Denmark +B.1.1.378 UK and Brazil +B.1.1.379 Wales +B.1.1.380 USA +B.1.1.381 Peruvian +B.1.1.382 South African lineage +B.1.1.383 South African +B.1.1.384 Swiss Lineage +B.1.1.385 German Lineage +B.1.1.386 South African lineage +B.1.1.387 South African lineage +B.1.1.388 Columbian lineage +B.1.1.389 Costa Rica lineage +B.1.1.391 UAE lineage +B.1.1.392 USA lineage +B.1.1.393 Brazilian lineage +B.1.1.394 Portugal lineage +B.1.1.395 UK lineage, previously part of B.1.1.279 +B.1.1.396 Russian lineage, some previously B.1.1.184 +B.1.1.397 Predominantly Russia, includes some previous B.1.1.67 and H.1 sequences +B.1.1.398 USA/ Indonesian lineage +B.1.1.399 Irish lineage +B.1.1.400 Spain lineage +B.1.1.401 Portugal lineage +B.1.1.402 USA (Texas), split from B.1.1.177 +B.1.1.403 USA +B.1.1.404 Ghana, Burkina Faso, Luxembourg, Germany +B.1.1.405 Germany lineage +AC.1 Alias of B.1.1.405.1, UK lineage +B.1.1.406 Spain, UK, Italy +B.1.1.407 Mostly Russia +B.1.1.408 UK lineage +B.1.1.409 UAE, Israel, Saudi Arabia +B.1.1.410 Portugal lineage +B.1.1.411 Ecuador and US +B.1.1.412 South African lineage +B.1.1.413 Europe, Turkey, Iran +B.1.1.414 Indian lineage +B.1.1.415 Austrian lineage +B.1.1.416 USA lineage +B.1.1.417 Canada lineage +B.1.1.418 USA lineage +B.1.1.419 UK lineage, includes some formally B.1.1.193 sequences +B.1.1.420 Western Europe, USA +B.1.1.421 Portuguese lineage +B.1.1.422 Lithuanian lineage +B.1.1.423 USA lineage +B.1.1.424 Russia lineage, contains some formally B.1.1.167 sequences +B.1.1.425 England and Denmark +B.1.1.426 USA lineage +B.1.1.427 Russian Lineage +B.1.1.428 Switzerland and North Macedonia +B.1.1.429 Latvia and Finland +B.1.1.430 North Macedonia +B.1.1.431 Australia and Canada +B.1.1.432 USA and Mexico +B.1.1.433 Denmark and Switzerland, some B.1.1.281 +B.1.1.434 Mostly USA lineage with some UK and Canada (was B.1.1.304) +B.1.1.435 Russian +B.1.1.436 Belgium lineage +B.1.1.437 USA lineage +B.1.1.438 Swedish lineage +B.1.1.440 USA and Mexico +B.1.1.441 USA lineage +B.1.1.442 Argentinian +B.1.1.444 South African (was B.1.1.117) +B.1.1.445 Switzerland lineage +B.1.1.446 Sweden lineage +B.1.1.447 USA lineage +B.1.1.448 South African (was B.1.1.54) +B.1.1.449 Russia lineage +B.1.1.450 USA lineage +B.1.1.451 Norway lineage +B.1.1.452 Russia lineage +B.1.1.453 US +B.1.1.456 South African +B.1.1.458 Swedish lineage +B.1.1.459 South African lineage (some were part of Belgian lineage B.1.1.75 +B.1.1.461 USA TX lineage +B.1.1.462 United Arab Emirates +B.1.1.463 USA CA lineage +B.1.1.464 USA lineage +AW.1 Alias of B.1.1.464.1, Canadian lineage, from #103 +B.1.1.465 Japanese lineage +B.1.1.466 Gambian lineage +B.1.1.467 USA lineage (NY) +B.1.1.480 USA Lineage +B.1.1.481 Russian Lineage +B.1.1.482 USA Lineage +AV.1 Alias of B.1.1.482.1, UK and France lineage with several VOC/VUI-like mutations, from #73 +B.1.1.483 Belgian lineage +B.1.1.484 Nigerian Lineage +B.1.1.485 Ghanaian Lineage +B.1.1.486 USA Lineage +B.1.1.487 UK and Nigerian Lineage +B.1.1.500 UAE lineage +B.1.1.506 Mainly Russian +B.1.1.507 South African Lineage (was B.1.1.254) +B.1.1.512 USA/Mexico +B.1.1.513 USA lineage (NY) +B.1.1.514 USA lineage +B.1.1.515 German lineage +B.1.1.516 Costa Rica lineage +B.1.1.517 USA lineage +B.1.1.518 USA/ Mexico lineage +B.1.1.519 USA/ Mexico lineage, from #111 +B.1.1.521 European lineage +B.1.1.522 Belgium lineage +B.1.1.523 Lineage in multiple countries, predominantly Russia, from #69 +B.1.1.524 Predominantly Russia lineage, from #85 +B.1.1.525 Predominantly Russia lineage, from #85 +B.1.1.526 India lineage, previously designated B.1.624, from #91 +B.1.1.528 South Africa lineage, from #177 +B.1.1.529 South Africa and Botswana lineage, from #343 +BA.1 Alias of B.1.1.529.1, from #361 +BA.1.1 Alias of B.1.1.529.1.1, from #360 +BA.1.1.1 Alias of B.1.1.529.1.1.1, European lineage +BC.1 Alias of B.1.1.529.1.1.1.1, Japan lineage +BC.2 Alias of B.1.1.529.1.1.1.2, Peru lineage, from #570 +BA.1.1.2 Alias of B.1.1.529.1.1.2, Japan lineage +BA.1.1.3 Alias of B.1.1.529.1.1.3, Switzerland lineage +BA.1.1.4 Alias of B.1.1.529.1.1.4, UK lineage +BA.1.1.5 Alias of B.1.1.529.1.1.5, South Korea lineage +BA.1.1.6 Alias of B.1.1.529.1.1.6, Canada lineage +BA.1.1.7 Alias of B.1.1.529.1.1.7, lineage in India and other countries +BA.1.1.8 Alias of B.1.1.529.1.1.8, USA lineage +BA.1.1.9 Alias of B.1.1.529.1.1.9, New Zealand lineage +BA.1.1.10 Alias of B.1.1.529.1.1.10, Canada lineage +BA.1.1.11 Alias of B.1.1.529.1.1.11, European lineage +BA.1.1.12 Alias of B.1.1.529.1.1.12, UK lineage +BA.1.1.13 Alias of B.1.1.529.1.1.13, UK lineage +BA.1.1.14 Alias of B.1.1.529.1.1.14, European lineage +BA.1.1.15 Alias of B.1.1.529.1.1.15, Europe and Australia lineage +BA.1.1.16 Alias of B.1.1.529.1.1.16, Canada and USA lineage +BA.1.1.17 Alias of B.1.1.529.1.1.17, USA lineage, from #452 +BA.1.1.18 Alias of B.1.1.529.1.1.18, USA lineage +BA.1.2 Alias of B.1.1.529.1.2, Mayotte and Reunion lineage +BA.1.3 Alias of B.1.1.529.1.3, Canada lineage +BA.1.4 Alias of B.1.1.529.1.4, France lineage +BA.1.5 Alias of B.1.1.529.1.5, UK lineage +BA.1.6 Alias of B.1.1.529.1.6, Canada and Sint Maarten lineage +BA.1.7 Alias of B.1.1.529.1.7, UK lineage +BA.1.8 Alias of B.1.1.529.1.8, European lineage +BA.1.9 Alias of B.1.1.529.1.9, Brazil lineage +BA.1.10 Alias of B.1.1.529.1.10, UK lineage +BA.1.12 Alias of B.1.1.529.1.12, UK lineage +BA.1.13 Alias of B.1.1.529.1.13, European lineage +BA.1.13.1 Alias of B.1.1.529.1.13.1, Indonesia lineage +BA.1.14 Alias of B.1.1.529.1.14, lineage in Brazil and other countries +BA.1.14.1 Alias of B.1.1.529.1.14.1, Brazil lineage, from #506 +BA.1.14.2 Alias of B.1.1.529.1.14.2, Brazil lineage +BA.1.15 Alias of B.1.1.529.1.15, lineage in USA and other countries +BA.1.15.1 Alias of B.1.1.529.1.15.1, UK lineage +BA.1.15.2 Alias of B.1.1.529.1.15.2, USA lineage, from #508 +BA.1.15.3 Alias of B.1.1.529.1.15.3, Peru lineage, from #573 +BA.1.16 Alias of B.1.1.529.1.16, UK lineage +BA.1.16.1 Alias of B.1.1.529.1.16.1, Thailand, Cambodia and Indonesia lineage +BA.1.16.2 Alias of B.1.1.529.1.16.2, Greece lineage +BA.1.17 Alias of B.1.1.529.1.17, European lineage +BA.1.17.1 Alias of B.1.1.529.1.17.1, Australia lineage +BA.1.17.2 Alias of B.1.1.529.1.17.2, from #462 +BD.1 Alias of B.1.1.529.1.17.2.1, UK lineage, from #461 +BA.1.18 Alias of B.1.1.529.1.18, Europe and North America lineage, from #474 +BA.1.19 Alias of B.1.1.529.1.19, Europe lineage, from #475 +BA.1.20 Alias of B.1.1.529.1.20, USA lineage, from #375 +BA.1.21 Alias of B.1.1.529.1.21, lineage, from #505 +BA.1.21.1 Alias of B.1.1.529.1.21.1, Italy lineage, from #409 +BA.1.22 Alias of B.1.1.529.1.22, Peru lineage, from #529 +BA.1.23 Alias of B.1.1.529.1.23, mainly found in USA, from #663 +BA.1.24 Alias of B.1.1.529.1.24, found in Spain, from #666 +BA.2 Alias of B.1.1.529.2, from #361 +BA.2.1 Alias of B.1.1.529.2.1, UK lineage +BA.2.2 Alias of B.1.1.529.2.2, Hong Kong lineage, from #430 +BA.2.2.1 Alias of B.1.1.529.2.2.1, China lineage, from #675 +BA.2.3 Alias of B.1.1.529.2.3, lineage in Philippines and other countries +BA.2.3.1 Alias of B.1.1.529.2.3.1, Japan lineage, from #495 +BA.2.3.2 Alias of B.1.1.529.2.3.2, Vietnam and Japan lineage +BS.1 Alias of B.1.1.529.2.3.2.1, Vietnam lineage, from #1052 +BS.1.1 Alias of B.1.1.529.2.3.2.1.1, Vietnam lineage, defined by S:K356T, from #1097 +BS.1.2 Alias of B.1.1.529.2.3.2.1.2, Vietnam lineage, defined by S:T430I +BA.2.3.4 Alias of B.1.1.529.2.3.4, Canada lineage +BA.2.3.5 Alias of B.1.1.529.2.3.5, mainly found in USA, England and Spain, from #627 +BA.2.3.6 Alias of B.1.1.529.2.3.6, mainly found in Canada and USA, from #633 +BA.2.3.7 Alias of B.1.1.529.2.3.7, mainly found in Japan, Hong Kong and Taiwan, from #643 +BA.2.3.8 Alias of B.1.1.529.2.3.8, South Korea lineage +BA.2.3.9 Alias of B.1.1.529.2.3.9, lineage in Netherlands and other countries +BA.2.3.10 Alias of B.1.1.529.2.3.10, Canada and USA lineage +BA.2.3.11 Alias of B.1.1.529.2.3.11, Japan lineage, from #605 +BA.2.3.12 Alias of B.1.1.529.2.3.12, South Korea lineage +BA.2.3.13 Alias of B.1.1.529.2.3.13, Japan lineage +BA.2.3.14 Alias of B.1.1.529.2.3.14, South Korea lineage +BA.2.3.15 Alias of B.1.1.529.2.3.15, Italy and Spain lineage +BA.2.3.16 Alias of B.1.1.529.2.3.16, Papua New Guinea lineage, from #524 +BP.1 Alias of B.1.1.529.2.3.16.1, Oceania/South East Asia lineage, from #1009 +BA.2.3.17 Alias of B.1.1.529.2.3.17, Northern Mariana Islands and USA lineage, from #677 +BA.2.3.18 Alias of B.1.1.529.2.3.18, Japan lineage, from #687 +BA.2.3.19 Alias of B.1.1.529.2.3.19, found Brunei, from #824 +BA.2.3.20 Alias of B.1.1.529.2.3.20, found globally, unclear origin, from #1013 +CM.1 Alias of B.1.1.529.2.3.20.1, S:N17S, from #1129 +CM.2 Alias of B.1.1.529.2.3.20.2, international, ORF1a:S2103F +CM.2.1 Alias of B.1.1.529.2.3.20.2.1, Indonesia/Australia, S:F486S, from #1356 +CM.3 Alias of B.1.1.529.2.3.20.3, USA/South Korea/Australia, S:G485D +CM.4 Alias of B.1.1.529.2.3.20.4, USA/Singapore/SouthKorea, ORF1b:D146G +CM.4.1 Alias of B.1.1.529.2.3.20.4.1, S:K478R, Philippines/Japan/USA +CM.5 Alias of B.1.1.529.2.3.20.5, global, 10802T +CM.5.1 Alias of B.1.1.529.2.3.20.5.1, S:Q675R +CM.5.2 Alias of B.1.1.529.2.3.20.5.2, S:G485D, USA/Australia, from #1386 +CM.6 Alias of B.1.1.529.2.3.20.6, global, ORF1a:G30A +CM.6.1 Alias of B.1.1.529.2.3.20.6.1, S:A348S, from #1165 +CM.7 Alias of B.1.1.529.2.3.20.7, Japan/Singapore, S:F486S +CM.7.1 Alias of B.1.1.529.2.3.20.7.1, S:K147E, Europe, from sars-cov-2-variants/lineage-proposals#37 +CM.7.1.1 Alias of B.1.1.529.2.3.20.7.1, S:R403K, Europe, from sars-cov-2-variants/lineage-proposals#37 +CM.8 Alias of B.1.1.529.2.3.20.8, S:G446S +CM.8.1 Alias of B.1.1.529.2.3.20.8.1, Australia/England, S:F486S +CM.8.1.1 Alias of B.1.1.529.2.3.20.8.1.1, Singapore/Malaysia, S:K147N +FV.1 Alias of B.1.1.529.2.3.20.8.1.1.1, S:R346T, M:E11Q, Singapore/SouthKorea/Japan/Philippines/HK +CM.8.1.2 Alias of B.1.1.529.2.3.20.8.1.2, Germany/USA, S:K147I +CM.8.1.3 Alias of B.1.1.529.2.3.20.8.1.3, USA, S:Y1272H +CM.8.1.4 Alias of B.1.1.529.2.3.20.8.1.4, ORF1b:N1790D, Philippines, from #1554 +CM.8.1.5 Alias of B.1.1.529.2.3.20.8.1.5, S:K150E, S:Y248H, N:A155V, Philippines, from sars-cov-2-variants/lineage-proposals#293 +CM.9 Alias of B.1.1.529.2.3.20.9, USA/Canada/Israel, S:S256L +CM.10 Alias of B.1.1.529.2.3.20.10, USA/South Korea/Singapore, S:K478T reversion, S:V445A +CM.11 Alias of B.1.1.529.2.3.20.11, USA/South Korea, S:R346T, S:F486S, from #1509 +CM.12 Alias of B.1.1.529.2.3.20.12, Hong Kong, USA, Australia, Japan, ORF8:T12I, from #1481 +BA.2.3.21 Alias of B.1.1.529.2.3.21, Philippines, S:P9L and 493 reversion +DD.1 Alias of B.1.1.529.2.3.21.1, Philippines/Australia, Δ69-70, Δ144, V213E, G339N, R346T, Y449N, N460K, N481K, Q493L, K1205N, from #1287 +BA.2.3.22 Alias of B.1.1.529.2.3.22, Philippines/Qatar/Germany, Δ69-70, W152L, N211-, L212I, S255F, R346T, K417T, F490A, A942S, from #1462 +BA.2.4 Alias of B.1.1.529.2.4, Singapore lineage +BA.2.5 Alias of B.1.1.529.2.5, lineage in Portugal and other countries +BA.2.6 Alias of B.1.1.529.2.6, lineage in France and other countries +BA.2.7 Alias of B.1.1.529.2.7, USA lineage +BA.2.8 Alias of B.1.1.529.2.8, UK lineage, from #486 +BA.2.9 Alias of B.1.1.529.2.9, European lineage, from #432 +BA.2.9.1 Alias of B.1.1.529.2.9.1, UK lineage, from #530 +BA.2.9.2 Alias of B.1.1.529.2.9.2, USA lineage +BA.2.9.3 Alias of B.1.1.529.2.9.3, mainly found in France, England, and Germany, from #630 +BA.2.9.4 Alias of B.1.1.529.2.9.4, mainly found in France, from #635 +BA.2.9.5 Alias of B.1.1.529.2.9.5, Thailand lineage +BA.2.9.6 Alias of B.1.1.529.2.9.6, mainly found in Spain, Denmark and Germany, from #671 +BA.2.9.7 Alias of B.1.1.529.2.9.7, found mainly in USA, from #864 +BA.2.10 Alias of B.1.1.529.2.10, lineage, from #496 +BA.2.10.1 Alias of B.1.1.529.2.10.1, lineage in Singapore and other countries +BJ.1 Alias of B.1.1.529.2.10.1.1, mainly found in India (West Bengal), from #915 +BA.2.10.2 Alias of B.1.1.529.2.10.2, mainly found in Japan, from #569 +BA.2.10.3 Alias of B.1.1.529.2.10.3, mainly found in England, India and Bangladesh, from #609 +BA.2.10.4 Alias of B.1.1.529.2.10.4, mainly found in India, from #898 +BA.2.11 Alias of B.1.1.529.2.11, France lineage, from #491 +BA.2.12 Alias of B.1.1.529.2.12, North America and Europe lineage, from #499 +BA.2.12.1 Alias of B.1.1.529.2.12.1, USA and Canada lineage, from #499 +BG.1 Alias of B.1.1.529.2.12.1.1, Peru lineage, from #679 +BG.2 Alias of B.1.1.529.2.12.1.2, mainly found in USA, and Denmark, from #767 +BG.3 Alias of B.1.1.529.2.12.1.3, mainly found in Peru, from #784 +BG.4 Alias of B.1.1.529.2.12.1.4, Israel lineage +BG.5 Alias of B.1.1.529.2.12.1.5, mainly found in USA, from #763 +BG.6 Alias of B.1.1.529.2.12.1.6, Peru lineage, from #836 +BG.7 Alias of B.1.1.529.2.12.1.7, found in Peru, from #1157 +BA.2.12.2 Alias of B.1.1.529.2.12.2, mainly found in Australia, from #686 +BA.2.13 Alias of B.1.1.529.2.13, Europe lineage, from #531 +BA.2.13.1 Alias of B.1.1.529.2.13.1, mainly found in USA, Canada and Colombia, from #785 +BA.2.14 Alias of B.1.1.529.2.14, Denmark lineage, from #512 +BA.2.15 Alias of B.1.1.529.2.15, South Africa lineage, from #533 +BA.2.16 Alias of B.1.1.529.2.16, UK lineage, from #534 +BA.2.17 Alias of B.1.1.529.2.17, Vietnam and Japan lineage, from #520 +BA.2.18 Alias of B.1.1.529.2.18, UK lineage, from #528 +BA.2.19 Alias of B.1.1.529.2.19, Germany lineage, from #535 +BA.2.20 Alias of B.1.1.529.2.20, Canada lineage, from #544 +BA.2.21 Alias of B.1.1.529.2.21, Canada and USA lineage, from #547 +BA.2.22 Alias of B.1.1.529.2.22, UK lineage, from #562 +BA.2.23 Alias of B.1.1.529.2.23, UK lineage, from #546 +BA.2.23.1 Alias of B.1.1.529.2.23.1, mainly found in England, USA and Denmark, from #532 +BA.2.24 Alias of B.1.1.529.2.24, Japan lineage, from #600 +BA.2.25 Alias of B.1.1.529.2.25, Sweden lineage +BA.2.25.1 Alias of B.1.1.529.2.25.1, Slovakia lineage +BA.2.26 Alias of B.1.1.529.2.26, USA lineage +BA.2.27 Alias of B.1.1.529.2.27, Thailand lineage +BA.2.28 Alias of B.1.1.529.2.28, Singapore lineage +BA.2.29 Alias of B.1.1.529.2.29, Japan lineage +BA.2.30 Alias of B.1.1.529.2.30, Curacao lineage +BA.2.31 Alias of B.1.1.529.2.31, Israel lineage +BA.2.31.1 Alias of B.1.1.529.2.31.1, mainly found in Uganda, defined by S:68T, from #819 +BA.2.32 Alias of B.1.1.529.2.32, Indonesia lineage +BA.2.33 Alias of B.1.1.529.2.33, Australia lineage +BA.2.34 Alias of B.1.1.529.2.34, Norway lineage +BA.2.35 Alias of B.1.1.529.2.35, Predominantly Portugal lineage, from #554 +BA.2.36 Alias of B.1.1.529.2.36, mainly found in Germany, Belgium, England and Denmark, from #565 +BA.2.37 Alias of B.1.1.529.2.37, mainly found in England, Scotland, Wales, from #572 +BA.2.38 Alias of B.1.1.529.2.38, lineage in India and other countries, from #541 +BA.2.38.1 Alias of B.1.1.529.2.38.1, India lineage, from #809 +BA.2.38.2 Alias of B.1.1.529.2.38.2, mainly found in India, from #828 +BA.2.38.3 Alias of B.1.1.529.2.38.3, mainly found in India, from #840 +BA.2.38.4 Alias of B.1.1.529.2.38.4, mainly found in India, from #746 +BH.1 Alias of B.1.1.529.2.38.3.1, mainly found in India, from #913 +BA.2.39 Alias of B.1.1.529.2.39, mainly found in England, from #575 +BA.2.40 Alias of B.1.1.529.2.40, mainly found in Malaysia, England, Denmark and Germany, from #542 +BA.2.40.1 Alias of B.1.1.529.2.40.1, mainly found in Malaysia, England, Germany and Denmark, from #542 +BA.2.41 Alias of B.1.1.529.2.41, mainly found in England and Scotland, from #586 +BA.2.42 Alias of B.1.1.529.2.42, mainly found in Australia, from #610 +BA.2.43 Alias of B.1.1.529.2.43, mainly found in India, from #612 +BA.2.44 Alias of B.1.1.529.2.44, mainly found in Belgium and Luxembourg, from #613 +BA.2.45 Alias of B.1.1.529.2.45, mainly found in Sweden and Denmark, from #616 +BA.2.46 Alias of B.1.1.529.2.46, mainly found in Scotland, from #626 +BA.2.47 Alias of B.1.1.529.2.47, mainly found in Denmark, England, and USA, from #631 +BA.2.48 Alias of B.1.1.529.2.48, ORF1a:T1322I, S:Y248S, T4579A, mainly found in USA, Scotland and England, from #634 +BA.2.49 Alias of B.1.1.529.2.49, mainly found in France, England and USA, from #640 +BA.2.50 Alias of B.1.1.529.2.50, mainly found in Scotland and England, from #641 +BA.2.51 Alias of B.1.1.529.2.51, mainly found in Denmark, from #644 +BA.2.52 Alias of B.1.1.529.2.52, mainly found in Italy, Germany, Denmark and USA, from #648 +BA.2.53 Alias of B.1.1.529.2.53, mainly found in Denmark, from #651 +BA.2.54 Alias of B.1.1.529.2.54, mainly found in Germany, Spain and Denmark, from #658 +BA.2.55 Alias of B.1.1.529.2.55, mainly found in England, USA and Scotland, from #660 +BA.2.56 Alias of B.1.1.529.2.56, mainly found in Europe, from #668 +BA.2.56.1 Alias of B.1.1.529.2.56.1, mainly found in Japan, from #745 +BA.2.57 Alias of B.1.1.529.2.57, Malaysia, Singapore and Australia lineage +BA.2.58 Alias of B.1.1.529.2.58, Reunion lineage +BA.2.59 Alias of B.1.1.529.2.59, mainly found in USA, from #672 +BA.2.60 Alias of B.1.1.529.2.60, Peru and Chile lineage, from #683 +BA.2.61 Alias of B.1.1.529.2.61, Singapore lineage +BA.2.62 Alias of B.1.1.529.2.62, Australia lineage +BA.2.63 Alias of B.1.1.529.2.63, Greece lineage +BA.2.64 Alias of B.1.1.529.2.64, Indonesia lineage +BA.2.65 Alias of B.1.1.529.2.65, Canada and USA lineage +BA.2.66 Alias of B.1.1.529.2.66, Canada lineage +BA.2.67 Alias of B.1.1.529.2.67, Slovakia lineage +BA.2.68 Alias of B.1.1.529.2.68, South Korea lineage +BA.2.69 Alias of B.1.1.529.2.69, Martinique lineage +BA.2.70 Alias of B.1.1.529.2.70, Croatia lineage +BA.2.71 Alias of B.1.1.529.2.71, mainly found in Norway, Sweden and Denmark, from #695 +BA.2.72 Alias of B.1.1.529.2.72, mainly found in USA, Germany and Switzerland, from #698 +BA.2.73 Alias of B.1.1.529.2.73, Puerto Rico and USA lineage, from #632 +BA.2.74 Alias of B.1.1.529.2.74, mainly found in India, from #775 +BA.2.75 Alias of B.1.1.529.2.75, mainly found in India, from #773 +BA.2.75.1 Alias of B.1.1.529.2.75.1, mainly found in India, from #856 +BL.1 Alias of B.1.1.529.2.75.1.1, mainly found in India, S:R346T on polytomy, from #944 +BL.1.1 Alias of B.1.1.529.2.75.1.1.1, defined by S:G614S, from #1079 +BL.1.2 Alias of B.1.1.529.2.75.1.1.2, mainly Austria, defined by S:G261D, S:V308L, from #1066 +BL.1.3 Alias of B.1.1.529.2.75.1.1.3, Switzerland, Israel, Canada, defined by S:F490L, from #1124 +BL.1.4 Alias of B.1.1.529.2.75.1.1.4, India/England/New Zealand, defined by S:F490V +BL.1.5 Alias of B.1.1.529.2.75.1.1.5, Japan, S:A475V +BL.2 Alias of B.1.1.529.2.75.1.2, mainly found in India, defined by S:R346T on A26612T branch +BL.2.1 Alias of B.1.1.529.2.75.1.2.1, Australia/Belgium, defined by S:K182E +BL.3 Alias of B.1.1.529.2.75.1.3, mainly found in India, defined by ORF1a:P2685S on A26612T branch +BL.4 Alias of B.1.1.529.2.75.1.4, mainly found in India, defined by ORF7a:P45L with 11224T and 22720G branch +BL.5 Alias of B.1.1.529.2.75.1.5, mainly found in Denmark, from #1105 +BL.6 Alias of B.1.1.529.2.75.1.6, mainly South Korea, S:R346T, S:V445A, from #1531 +BA.2.75.2 Alias of B.1.1.529.2.75.2, mainly found in Asia and Australia, from #963 +CA.1 Alias of B.1.1.529.2.75.2.1, USA lineage, defined by S:604I and S:452R, from #1063 +CA.2 Alias of B.1.1.529.2.75.2.2, international lineage, defined by S:S494P +CA.3 Alias of B.1.1.529.2.75.2.3, India, defined by N:M101I, from #1136 +CA.3.1 Alias of B.1.1.529.2.75.2.3.1, USA, S:K444M, S:L452R +CA.4 Alias of B.1.1.529.2.75.2.4, New Zealand, S:F486L, from #1181 +CA.5 Alias of B.1.1.529.2.75.2.5, USA, S:A260D, S:Q613H +CA.6 Alias of B.1.1.529.2.75.2.6, India, ORF1a:Y196H +CA.7 Alias of B.1.1.529.2.75.2.7, S:L452R after ORF1a:L3776I +BA.2.75.3 Alias of B.1.1.529.2.75.3, mainly found in India, from #965 +BM.1 Alias of B.1.1.529.2.75.3.1, mainly found in India, from #965 +BM.1.1 Alias of B.1.1.529.2.75.3.1.1, mainly found in India (West Bengal), defined by S:346T +BM.1.1.1 Alias of B.1.1.529.2.75.3.1.1.1, mainly found in India (West Bengal), defined by S:490S, from #1043 +CJ.1 Alias of B.1.1.529.2.75.3.1.1.1.1, S:S486P, from #1171 +CJ.1.1 Alias of B.1.1.529.2.75.3.1.1.1.1.1, S:V445A, Singapore/Malaysia/Japan, from #1384 +CJ.1.2 Alias of B.1.1.529.2.75.3.1.1.1.1.2, ORF1a:L2609F, Sweden/France/England +CJ.1.3 Alias of B.1.1.529.2.75.3.1.1.1.1.3, A261G reversion, G4960A, C14790T, South Korea +CJ.1.3.1 Alias of B.1.1.529.2.75.3.1.1.1.1.3.1, S:R214S, ORF1a:G3578S, South Korea/Japan, from sars-cov-2-variants/lineage-proposals#287 +CJ.1.3.2 Alias of B.1.1.529.2.75.3.1.1.1.1.3.2, S:D936H, South Korea, from sars-cov-2-variants/lineage-proposals#287 +BM.1.1.2 Alias of B.1.1.529.2.75.3.1.1.2, England, S:T883I, S:S939F, S:P1079T +BM.1.1.3 Alias of B.1.1.529.2.75.3.1.1.3, India, defined by ORF10:A8V +CV.1 Alias of B.1.1.529.2.75.3.1.1.3.1, Ireland, S:L452R +CV.2 Alias of B.1.1.529.2.75.3.1.1.3.2, Chile, S:486P, from #1374 +BM.1.1.4 Alias of B.1.1.529.2.75.3.1.1.4, S:K356T & S:T572I, from #1438 +EP.1 Alias of B.1.1.529.2.75.3.1.1.4.1, S:L452R, Bhutan, from #1676 +EP.1.1 Alias of B.1.1.529.2.75.3.1.1.4.1.1, ORF1a:P4120S, ORF8:Q18H, Bhutan +EP.1.1.1 Alias of B.1.1.529.2.75.3.1.1.4.1.1.1, S:T22N, S:T76I, S:T1006A, Bhutan/Thailand/Singapore +EP.2 Alias of B.1.1.529.2.75.3.1.1.4.2, S:S1147L, N:G212S, Belgium/Europe +BM.1.1.5 Alias of B.1.1.529.2.75.3.1.1.5, England/Belgium/France, S:N185S & S:L452R +BM.2 Alias of B.1.1.529.2.75.3.2, mainly found in India (Telangana), defined by S:346T +BM.2.1 Alias of B.1.1.529.2.75.3.2.1, India, defined by S:F486V +BM.2.2 Alias of B.1.1.529.2.75.3.2.2, Japan/Israel, defined by S:L455S +BM.2.3 Alias of B.1.1.529.2.75.3.2.3, India/Singapore, defined by S:F486I +BM.3 Alias of B.1.1.529.2.75.3.3, found in Nepal and globally, defined by ORF1b:P1652S +BM.4 Alias of B.1.1.529.2.75.3.4, mainly found in India, defined by ORF1a:Q1198K, from #957 +BM.4.1 Alias of B.1.1.529.2.75.3.4.1, mainly found in India, defined by S:F486S, from #957 +BM.4.1.1 Alias of B.1.1.529.2.75.3.4.1.1, mainly found in India, defined by S:346T +CH.1 Alias of B.1.1.529.2.75.3.4.1.1.1, defined by S:K444T, from #1113 +CH.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1, defined by S:L452R, from #1113 +CH.1.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1, defined by S:N185D +DV.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.1, UK, defined by S:L176F +DV.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.1.1, defined by S:Q613H and N:T265I, from #1720 +DV.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.2, UK, defined by S:I569V +DV.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3, UK, defined by ORF1a:E377K +DV.3.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3.1 found mainly in Portugal and UK, from #1626 +DV.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.4, Malaysia/Singapore, S:I714V, from #1617 +DV.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.5, England/Australia, ORF1a:R24C, S:613H, from #1753 +DV.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6, T15591C +DV.6.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.1, S:Q613H, T15591C, Central Europe +DV.6.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.2, S:Q613H, C6628T, Asia, from #2045 +DV.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:L858I, ORF1a:A3548V, England, from #2038 +DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F (G22927T), S:F456L (T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135 +DV.7.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.1, S:K679R, on branch ORF1a:K3353R Spain, from sars-cov-2-variants/lineage-proposals#732 +DV.7.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2, ORF1a:A4162V, Spain/England, from #2258 +JV.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.1, S:G485R, France, from sars-cov-2-variants/lineage-proposals#760 +JV.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.2, S:V772I, France/Spain +DV.7.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.3, S:A262S, on branch ORF1a:K3353R, from sars-cov-2-variants/lineage-proposals#851 +DV.7.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.4, G28001T, on branch ORF1a:K3353R +DV.7.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5, N:T135A, Spain, from sars-cov-2-variants/lineage-proposals#729 +KG.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.1, S:M153I, from sars-cov-2-variants/lineage-proposals#951 +KG.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.2, S:H49Y, S:A264D, S:G485R, Spain/Canada +DV.7.1.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.6, S:Q183K, N:A217S, from sars-cov-2-variants/lineage-proposals#765 +DV.7.1.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.7, S:V90I +DV.7.1.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.8, S:T961M, Spain, from sars-cov-2-variants/lineage-proposals#860 +DV.7.1.9 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.9, S:R1185H, Australia +DV.7.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.2, C703T, England +DV.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.8, S:Q613H, C8299T, C19602T, Sweden +CH.1.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.2, defined by S:T883I, ORF1a:Y1846C, ORF1a:G2294S on T27576C branch +CH.1.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.3, S:S255P, New Zealand/Australia/Hong Kong, from #1405 +GQ.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.3.1, S:486P, ORF1a:H1545Q, ORF1b:V1520L, Australia/New Zealand, from #1872 +GQ.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.3.1.1, S:G213E, New Zealand, from sars-cov-2-variants/lineage-proposals#343 +CH.1.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.4, S:H681R, Austria, from #1370 +CH.1.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.5, ORF3a:P104S, found mainly in Denmark and UK, from #1539 +CH.1.1.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.6, UK, defined by S:T732I +CH.1.1.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.7, New Zealand/Australia, defined by ORF1a:F143C +CH.1.1.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.8, Ireland, defined by S:A846V +CH.1.1.9 Alias of B.1.1.529.2.75.3.4.1.1.1.1.9, England, defined by S:I1232V +CH.1.1.10 Alias of B.1.1.529.2.75.3.4.1.1.1.1.10, Ireland, ORF1a:G442S +CH.1.1.11 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11, ORF1a:A1176T +GP.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.1, S:Q52H, ORF7a:T28I, Europe +GP.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.2, ORF6:S41F, T13450C, Europe +GP.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11.3, T5218C, A16878G, A26519G, C29236T, Ireland +CH.1.1.12 Alias of B.1.1.529.2.75.3.4.1.1.1.1.12, S:L858I on ORF1a:A486V branch, Denmark +FS.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.12.1, found mainly in Denmark, from #1816 +CH.1.1.13 Alias of B.1.1.529.2.75.3.4.1.1.1.1.13, ORF3a:S171L +CH.1.1.14 Alias of B.1.1.529.2.75.3.4.1.1.1.1.14, N:T362I +CH.1.1.15 Alias of B.1.1.529.2.75.3.4.1.1.1.1.15, found mainly in Lithuania, Germany and UK, from #1726 +CH.1.1.16 Alias of B.1.1.529.2.75.3.4.1.1.1.1.16, S:613H, ORF3a:S26L, on C193T branch, Germany/Sweden, from #1753 +CH.1.1.17 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17, M:S212G, on C21811T branch, from #1753 +FK.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1, found mainly in New Zealand and Australia, from #1718 +FK.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1, ORF1a:A1060T, on C27804T>ORF1b:L2580I>N:G34E branch, New Zealand, from #1881 +FK.1.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1.1, S:V445A, Australia, from sars-cov-2-variants/lineage-proposals#368 +FK.1.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1.2, C9223T, T23071G +FK.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2, ORF1a:L384F, ORF1a:R550H +FK.1.2.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2.1, ORF1a:T891I, Germany/Denmark/Finland/Austria +FK.1.2.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2.2, ORF1a:D139N, ORF1a:R226K, ORF1a:Q556K, ORF3a:T64N, T11737C, Australia/NZ +FK.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3, ORF1b:M1839I, on C27804T>ORF1b:L2580I>N:G34E branch, Australia +FK.1.3.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.1, S:E583D, Australia +FK.1.3.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.2, C9391T, T13596C, Australia/Japan +JL.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.3.2.1, S:E1111Q, Japan, from #2168 +FK.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.4, S:S704L, on C27804>ORF7a:Y40H branch, Australia +FK.1.4.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.4.1, S:G181A, Australia/Puerto Rico, from sars-cov-2-variants/lineage-proposals#88 +FK.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.5, G5155A, C12439T, Australia/New Zealand +CH.1.1.18 Alias of B.1.1.529.2.75.3.4.1.1.1.1.18, S:K187T, from #1747 +CH.1.1.19 Alias of B.1.1.529.2.75.3.4.1.1.1.1.19, C2773T, Europe +FJ.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.19.1, ORF1a:A1204V, England +CH.1.1.20 Alias of B.1.1.529.2.75.3.4.1.1.1.1.20, England, T299I, R403K, D1165G, from #1736 +CH.1.1.21 Alias of B.1.1.529.2.75.3.4.1.1.1.1.21, England, S:N481Y, from #1799 +CH.1.1.22 Alias of B.1.1.529.2.75.3.4.1.1.1.1.22, found mainly in Denmark, from #1670 +CH.1.1.23 Alias of B.1.1.529.2.75.3.4.1.1.1.1.23, found mainly in UK, from #1862 +CH.1.1.24 Alias of B.1.1.529.2.75.3.4.1.1.1.1.24, T931C, T6676C +CH.1.1.25 Alias of B.1.1.529.2.75.3.4.1.1.1.1.25, ORF1a:S330L, ORF1a:P4197S, US +CH.1.1.26 Alias of B.1.1.529.2.75.3.4.1.1.1.1.26, C29296T, Japan +CH.1.1.27 Alias of B.1.1.529.2.75.3.4.1.1.1.1.27, ORF1a:S538L, New Zealand +CH.1.1.28 Alias of B.1.1.529.2.75.3.4.1.1.1.1.28, ORF1b:V1092F, Europe +CH.1.1.29 Alias of B.1.1.529.2.75.3.4.1.1.1.1.29, S:613H, ORF1a:P371S, Europe/Canada +CH.1.1.30 Alias of B.1.1.529.2.75.3.4.1.1.1.1.30, ORF1a:Y2968H, C17913T, Germany/Netherlands/Austria +CH.1.1.31 Alias of B.1.1.529.2.75.3.4.1.1.1.1.31, ORF1a:N593S, ORF1a:P1497S, ORF1a:T2791I, ORF1b:D1024N, South Africa +JP.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.31.1, S:R403K, S:V36I, S:G181E, South Africa, from sars-cov-2-variants/lineage-proposals#655 +JP.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.31.1.1, S:G1219V, ORF1a:T1542I, South Africa +CH.1.1.32 Alias of B.1.1.529.2.75.3.4.1.1.1.1.32, S:L858I, N:P80Q, ORF1a:E974A, from #2150 +CH.2 Alias of B.1.1.529.2.75.3.4.1.1.2, defined by S:Q183H +CH.3 Alias of B.1.1.529.2.75.3.4.1.1.3, defined by S:486P on ORF1b:Q2425R branch, from #1375 +CH.3.1 Alias of B.1.1.529.2.75.3.4.1.1.3.1, S:S494P, Australia/Indonesia, from #1421 +BM.5 Alias of B.1.1.529.2.75.3.5, mainly found in India, defined by S:L455S, from #1047 +BM.6 Alias of B.1.1.529.2.75.3.6, India, defined by S:G75V followed by S:L455S +BA.2.75.4 Alias of B.1.1.529.2.75.4, mainly found in India, from #935 +BR.1 Alias of B.1.1.529.2.75.4.1, mainly found in India (Karnataka), defined by S:K444M +BR.1.1 Alias of B.1.1.529.2.75.4.1.1, Austria/Australia, S:T307S +BR.1.2 Alias of B.1.1.529.2.75.4.1.2, Italy/USA, S:F486S +BR.2 Alias of B.1.1.529.2.75.4.2, found in Australia, defined by S:R346T and S:486I, from #1063 +BR.2.1 Alias of B.1.1.529.2.75.4.2.1, found mainly in Australia, from #1292 +BR.3 Alias of B.1.1.529.2.75.4.3, India, Australia, Austria, defined by S:R346T, from #1063 +BR.4 Alias of B.1.1.529.2.75.4.4, S:K444T and S:G446S reversion, from #1179 +BR.5 Alias of B.1.1.529.2.75.4.5 found mainly in SouthKorea and usa, from #1345 +BR.5.1 Alias of B.1.1.529.2.75.4.5.1 ORF1a:K2029N, ORF1b:T1522I, A20289G, South Korea +BA.2.75.5 Alias of B.1.1.529.2.75.5, mainly found in India, from #947 +BN.1 Alias of B.1.1.529.2.75.5.1, mainly found in India, from #994 +BN.1.1 Alias of B.1.1.529.2.75.5.1.1, India/Austria, S:S494P, from #1176 +BN.1.1.1 Alias of B.1.1.529.2.75.5.1.1.1, Austria, S:N185D +BN.1.2 Alias of B.1.1.529.2.75.5.1.2, Singapore/England, E:D72G +BN.1.2.1 Alias of B.1.1.529.2.75.5.1.2.1, England/Portugal, S:T470N, from #1238 +BN.1.2.2 Alias of B.1.1.529.2.75.5.1.2.2, C29546T +BN.1.2.3 Alias of B.1.1.529.2.75.5.1.2.3, C1471T +FR.1 Alias of B.1.1.529.2.75.5.1.2.3.1, S:K187E, N:T366I, Japan/Taiwan/USA, from #1814 +FR.1.1 Alias of B.1.1.529.2.75.5.1.2.3.1.1, S:P82H, ORF1a:L293F, China, from #2006 +FR.1.2 Alias of B.1.1.529.2.75.5.1.2.3.1.2, S:R190M, China, from #2028 +FR.1.3 Alias of B.1.1.529.2.75.5.1.2.3.1.3, ORF1a:A206V, ORF1b:A517V, N:G34E, China, from #2039 +FR.1.4 Alias of B.1.1.529.2.75.5.1.2.3.1.4, A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China, from sars-cov-2-variants/lineage-proposals#256 +FR.1.5 Alias of B.1.1.529.2.75.5.1.2.3.1.5, ORF1a:V116M, ORF1a:S2242F, ORF1a:M4071T, Japan +FR.2 Alias of B.1.1.529.2.75.5.1.2.3.2, ORF1a:Y1920H, ORF1b:I1799S, South Korea +BN.1.2.4 Alias of B.1.1.529.2.75.5.1.2.4, ORF1b:D1746H +BN.1.2.5 Alias of B.1.1.529.2.75.5.1.2.5, C3241T, C16833T, G22225A, South Korea +BN.1.2.6 Alias of B.1.1.529.2.75.5.1.2.6, ORF1b:A1326S, South Korea +BN.1.2.7 Alias of B.1.1.529.2.75.5.1.2.7, N:N8S, C16332T, Taiwan, from #1923 +BN.1.2.8 Alias of B.1.1.529.2.75.5.1.2.8, S:N703K, Russia +BN.1.3 Alias of B.1.1.529.2.75.5.1.3, India, ORF3a:T229I +BN.1.3.1 Alias of B.1.1.529.2.75.5.1.3.1, found mainly in Israel, England and Denmark, from #1257 +DS.1 Alias of B.1.1.529.2.75.5.1.3.1.1, USA/Ireland/Austria, S:F486S, S:R403K +DS.2 Alias of B.1.1.529.2.75.5.1.3.1.2, Germany, S:T572I +DS.3 Alias of B.1.1.529.2.75.5.1.3.1.3, Denmark, ORF3a:G254V +BN.1.3.2 Alias of B.1.1.529.2.75.5.1.3.2, S:V445A found mainly in Japan, from #1397 +BN.1.3.3 Alias of B.1.1.529.2.75.5.1.3.3, S:E147Q, mainly Europe +BN.1.3.4 Alias of B.1.1.529.2.75.5.1.3.4, S:V445A, Japan/England/NZ/Russia +BN.1.3.5 Alias of B.1.1.529.2.75.5.1.3.5 ORF7b:C41W, found mainly in SouthKorea, Japan and USA, from #1516 +BN.1.3.6 Alias of B.1.1.529.2.75.5.1.3.6 M:R174Q +BN.1.3.7 Alias of B.1.1.529.2.75.5.1.3.7 ORF1a:T1429I +BN.1.3.8 Alias of B.1.1.529.2.75.5.1.3.8 S:D1139H +EJ.1 Alias of B.1.1.529.2.75.5.1.3.8.1, S:I1225V +EJ.2 Alias of B.1.1.529.2.75.5.1.3.8.2, ORF1a:T4355I +EJ.3 Alias of B.1.1.529.2.75.5.1.3.8.3, C2509T, C3241T, C17004T, South Korea +BN.1.3.9 Alias of B.1.1.529.2.75.5.1.3.9 S:V83F, from #1748 +BN.1.3.10 Alias of B.1.1.529.2.75.5.1.3.10 ORF1a:Q1918R, C13608T, Asia/Oceania +BN.1.3.11 Alias of B.1.1.529.2.75.5.1.3.11 ORF1a:T568I, ORF1a:V1211F, South Korea +BN.1.3.12 Alias of B.1.1.529.2.75.5.1.3.12 C14358T, T22672C, South Korea/Thailand/Germany +BN.1.3.13 Alias of B.1.1.529.2.75.5.1.3.13 S:V445A, C3817T, C17818T, Taiwan/Japan/South Korea, from sars-cov-2-variants/lineage-proposals#218 +BN.1.4 Alias of B.1.1.529.2.75.5.1.4, India, 27501C +BN.1.4.1 Alias of B.1.1.529.2.75.5.1.4.1, S:G261V & S:T678I, from #1417 +BN.1.4.2 Alias of B.1.1.529.2.75.5.1.4.2, S:Q1113K +BN.1.4.3 Alias of B.1.1.529.2.75.5.1.4.3, ORF1a:P1096T +BN.1.4.4 Alias of B.1.1.529.2.75.5.1.4.4, ORF1b:V1149L, ORF1b:V1723M +BN.1.4.5 Alias of B.1.1.529.2.75.5.1.4.5, ORF1a:T3287I +BN.1.5 Alias of B.1.1.529.2.75.5.1.5, ORF1a:S2103F +BN.1.5.1 Alias of B.1.1.529.2.75.5.1.5.1, New Zealand, S:S514T +BN.1.5.2 Alias of B.1.1.529.2.75.5.1.5.2, S:N481K +BN.1.6 Alias of B.1.1.529.2.75.5.1.6, S:D1139H +BN.1.7 Alias of B.1.1.529.2.75.5.1.7, England, S:M177T, S:H1101Y, from #1310 +BN.1.8 Alias of B.1.1.529.2.75.5.1.8, Iceland/USA, S:A475V +BN.1.9 Alias of B.1.1.529.2.75.5.1.9, found mainly in Indonesia, from #1327 +BN.1.10 Alias of B.1.1.529.2.75.5.1.10, defined by S:Y145H +BN.1.11 Alias of B.1.1.529.2.75.5.1.11, South Korea, defined by S:L176F, S:D936H +BN.2 Alias of B.1.1.529.2.75.5.2, mainly found in India, from #1021 +BN.2.1 Alias of B.1.1.529.2.75.5.2.1, mainly USA and Canada lineage, defined by S:H49Y and S:F490S +BN.3 Alias of B.1.1.529.2.75.5.3, defined by S:N450D on ORF1a:392D branch +BN.3.1 Alias of B.1.1.529.2.75.5.3.1, South Korea/Austria/Israel/Belgium, defined by S:F490S +BN.4 Alias of B.1.1.529.2.75.5.4, Netherlands/Germany, defined by S:F490S on ORF1a:392D branch +BN.5 Alias of B.1.1.529.2.75.5.5, India, defined by ORF1a:V2995M +BN.6 Alias of B.1.1.529.2.75.5.6, India, defined by ORF1a:T3959A +BA.2.75.6 Alias of B.1.1.529.2.75.6, mainly found in India, defined by S:R346T on the BA.2.75 polytomy +BY.1 Alias of B.1.1.529.2.75.6.1, mainly found in India, defined by S:F486S on BA.2.75.6 +BY.1.1 Alias of B.1.1.529.2.75.6.1.1, S:L452R +BY.1.1.1 Alias of B.1.1.529.2.75.6.1.1.1, Europe, S:N185D, S:H207R, +BY.1.2 Alias of B.1.1.529.2.75.6.1.2, Europe, 26828T +BY.1.2.1 Alias of B.1.1.529.2.75.6.1.2.1, Austria/England, S:S494P, from #1184 +BA.2.75.7 Alias of B.1.1.529.2.75.7, mainly found in India, defined by S:F486S on the BA.2.75 polytomy +BA.2.75.8 Alias of B.1.1.529.2.75.8, Singapore/Australia, defined by S:L452Q, from #1085 +BA.2.75.9 Alias of B.1.1.529.2.75.9, India, defined by S:R346T after 17679T, from #1098 +CB.1 Alias of B.1.1.529.2.75.9.1, England, defined by S:486V, from #1098 +BA.2.75.10 Alias of B.1.1.529.2.75.10, India, ORF1a:T3959A +BA.2.76 Alias of B.1.1.529.2.76, mainly found in India and USA, from #787 +BA.2.76.1 Alias of B.1.1.529.2.76.1, mainly found in India, from #899 +BA.2.76.2 Alias of B.1.1.529.2.76.2, found in Japan, from #939 +BA.2.77 Alias of B.1.1.529.2.77, mainly found in Ireland, England and USA, from #732 +BA.2.78 Alias of B.1.1.529.2.78, mainly found in India, from #814 +BA.2.79 Alias of B.1.1.529.2.79, Kuwait and Israel lineage, from #812 +BA.2.79.1 Alias of B.1.1.529.2.79.1, India lineage, from #814 +BA.2.80 Alias of B.1.1.529.2.80, found in Denmark, from #733 +BA.2.81 Alias of B.1.1.529.2.81, Brazil lineage +BA.2.82 Alias of B.1.1.529.2.82, mainly found in Australia, Israel and Japan, from #874 +BA.2.83 Alias of B.1.1.529.2.83, mainly found in India, from #1053 +BA.2.85 Alias of B.1.1.529.2.85, mainly found in Japan, from #983 +BA.2.86 Alias of B.1.1.529.2.86, from #2183 +BA.2.86.1 Alias of B.1.1.529.2.86.1, ORF1a:K1973R, mostly with C12815T, mainly Europe, from #2236 +JN.1 Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe +JN.1.1 Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-cov-2-variants/lineage-proposals#987 +JN.1.1.1 Alias of B.1.1.529.2.86.1.1.1.1, S:T572I on C9142T branch, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097 +JN.1.1.2 Alias of B.1.1.529.2.86.1.1.1.2, S:G181E, France, from sars-cov-2-variants/lineage-proposals#1147 +JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T +LT.1 Alias of B.1.1.529.2.86.1.1.1.3.1, S:F456V, L176F, USA/Canada +JN.1.1.4 Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L on C9142T branch, from #2476 +JN.1.1.5 Alias of B.1.1.529.2.86.1.1.1.5, S:R346T on C9142T branch, from #2492 +KR.1 Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L (22928C), after C28498T, from sars-cov-2-variants/lineage-proposals#1253 +KR.1.1 Alias of B.1.1.529.2.86.1.1.1.5.1.1, S:F59L +KR.1.2 Alias of B.1.1.529.2.86.1.1.1.5.1.2, S:R683Q +KR.3 Alias of B.1.1.529.2.86.1.1.1.5.3, S:F456L (22930A) +KR.4 Alias of B.1.1.529.2.86.1.1.1.5.4, S:Q218E +KR.5 Alias of B.1.1.529.2.86.1.1.1.5.5, ORF1a:L642F, ORF1a:T2087I, Brazil +JN.1.1.6 Alias of B.1.1.529.2.86.1.1.1.6, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 +KZ.1 Alias of B.1.1.529.2.86.1.1.1.6.1, ORF1b:V1092F +KZ.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1, S:R346T from #2548 +KZ.1.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1.1, S:T572I from #2548 +JN.1.1.7 Alias of B.1.1.529.2.86.1.1.1.7, S:S31F, from sars-cov-2-variants/lineage-proposals#1157 +LC.1 Alias of B.1.1.529.2.86.1.1.1.7.1, S:R346T +JN.1.1.8 Alias of B.1.1.529.2.86.1.1.1.8, S:F456L (22930A), S:H445P, ORF1a:S2083I, C850T +JN.1.1.9 Alias of B.1.1.529.2.86.1.1.1.9, G2035A, on C9142T branch, China +JN.1.1.10 Alias of B.1.1.529.2.86.1.1.1.10, C23557T, Ukraine +JN.1.2 Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087 +JN.1.2.1 Alias of B.1.1.529.2.86.1.1.2.1, S:H1101Y, Ireland, from sars-cov-2-variants/lineage-proposals#1322 +JN.1.3 Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands +JN.1.4 Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381 +JN.1.4.1 Alias of B.1.1.529.2.86.1.1.4.1, S:E654V, Ireland, from sars-cov-2-variants/lineage-proposals#1175 +JN.1.4.2 Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, after T18453C, USA, from #2462 +LL.1 Alias of B.1.1.529.2.86.1.1.4.2.1, S:F456L (T22930A), S:S680F, USA +JN.1.4.3 Alias of B.1.1.529.2.86.1.1.4.3, S:T572I, USA, from #2487 +KQ.1 Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA from #2487 +JN.1.4.4 Alias of B.1.1.529.2.86.1.1.4.4, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 +JN.1.4.5 Alias of B.1.1.529.2.86.1.1.4.5, ORF8:S103L, after T18453C, from #2426 +KV.1 Alias of B.1.1.529.2.86.1.1.4.5.1, S:S680F, after C28948T then A2356T +KV.2 Alias of B.1.1.529.2.86.1.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA, from sars-cov-2-variants/lineage-proposals#1097 +JN.1.4.6 Alias of B.1.1.529.2.86.1.1.4.6, S:T572I, after T18453C, from sars-cov-2-variants/lineage-proposals#1097 +JN.1.4.7 Alias of B.1.1.529.2.86.1.1.4.7, ORF3a:G18D +LE.1 Alias of B.1.1.529.2.86.1.1.4.7.1, S:R346T, Africa +LE.1.1 Alias of B.1.1.529.2.86.1.1.4.7.1.1, S:F456V +LE.1.2 Alias of B.1.1.529.2.86.1.1.4.7.1.2, S:K304N +LE.1.3 Alias of B.1.1.529.2.86.1.1.4.7.1.3, S:L84V, ORF7a:T120I, Kenya +LE.1.3.1 Alias of B.1.1.529.2.86.1.1.4.7.1.3.1, S:Q173K, S:F456L (T22928C), ORF7a:A66V +LE.2 Alias of B.1.1.529.2.86.1.1.4.7.2, S:R346S, C7423T +JN.1.4.8 Alias of B.1.1.529.2.86.1.1.4.8, S:S60P, T13578C, USA，from #2625 +JN.1.5 Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419 +JN.1.6 Alias of B.1.1.529.2.86.1.1.6, G22627A +JN.1.6.1 Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden, from sars-cov-2-variants/lineage-proposals#1089 +JN.1.7 Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France, from sars-cov-2-variants/lineage-proposals#1097 +JN.1.7.1 Alias of B.1.1.529.2.86.1.1.7.1, S:R346K, England, from sars-cov-2-variants/lineage-proposals#1371 +JN.1.7.2 Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas +JN.1.7.3 Alias of B.1.1.529.2.86.1.1.7.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1343 +JN.1.7.4 Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C) +JN.1.7.5 Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y +LK.1 Alias of B.1.1.529.2.86.1.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada +LK.2 Alias of B.1.1.529.2.86.1.1.7.5.2, S:R346T +LK.2.1 Alias of B.1.1.529.2.86.1.1.7.5.2.1, S:S455A, S:T547K, Central America +JN.1.7.6 Alias of B.1.1.529.2.86.1.1.7.6, S:S60P, ORF1a:P1609S, Wales +JN.1.7.7 Alias of B.1.1.529.2.86.1.1.7.7, ORF1b:K2557R +JN.1.7.8 Alias of B.1.1.529.2.86.1.1.7.8, S:F456L (22930A), S:185-189del, N:365L, Central America +JN.1.7.9 Alias of B.1.1.529.2.86.1.1.7.9, G347A, C1057T, C7834T, S:F456L (22930A) +JN.1.8 Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I +JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097 +JN.1.8.2 Alias of B.1.1.529.2.86.1.1.8.2, S:R346T, after A12928G, from sars-cov-2-variants/lineage-proposals#1089 +KY.1 Alias of B.1.1.529.2.86.1.1.8.2.1, ORF1a:N3774D, Nigeria +JN.1.8.3 Alias of B.1.1.529.2.86.1.1.8.3, C13821T, C14925T +JN.1.8.4 Alias of B.1.1.529.2.86.1.1.8.4, S:G946R +JN.1.9 Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410 +JN.1.9.1 Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097 +JN.1.9.2 Alias of B.1.1.529.2.86.1.1.9.2, S:R346T +LB.1 Alias of B.1.1.529.2.86.1.1.9.2.1, S:F456L (T22928C) +LB.1.1 Alias of B.1.1.529.2.86.1.1.9.2.1.1, S:V1104L, Canada +LB.1.2 Alias of B.1.1.529.2.86.1.1.9.2.1.2, ORF1b:G2068R +LB.1.2.1 Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T +LB.1.3 Alias of B.1.1.529.2.86.1.1.9.2.1.3, ORF1b:T1555I +LB.1.3.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.1, S:445P, N:T379I +LB.1.3.2 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2, C25413T +MH.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I +LB.1.4 Alias of B.1.1.529.2.86.1.1.9.2.1.4, ORF1a:A1473V +LB.1.4.1 Alias of B.1.1.529.2.86.1.1.9.2.1.4.1, S:R190S +LB.1.5 Alias of B.1.1.529.2.86.1.1.9.2.1.5, S:L1143F, ORF1b:T1621I, Asia，from sars-cov-2-variants/lineage-proposals#1557 +LB.1.6 Alias of B.1.1.529.2.86.1.1.9.2.1.6, S:I670M, England/Canada +LB.1.7 Alias of B.1.1.529.2.86.1.1.9.2.1.7, ORF1a:L1507F, G21123T +LB.1.7.1 Alias of B.1.1.529.2.86.1.1.9.2.1.7.1, S:N148T, USA-NY +LB.1.7.2 Alias of B.1.1.529.2.86.1.1.9.2.1.7.2, S:S680P +LB.1.7.3 Alias of B.1.1.529.2.86.1.1.9.2.1.7.3, S:R34C +LB.1.8 Alias of B.1.1.529.2.86.1.1.9.2.1.8, ORF1a:I785V +JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135 +JN.1.11 Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446 +JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253 +KP.1 Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/lineage-proposals#1364 +KP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 +KP.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N, after ORF1b:L2213F, from #2510 +MG.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.1, S:T572I, S:679N, ORF1a:V3091I +KP.1.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C +KP.1.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del +LP.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1, S:M1229I,from sars-cov-2-variants/lineage-proposals#1591 +LP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1.1, S:S255F, Dominican Republic +LP.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.2, S:S71Y, ORF1b:T2286I +LP.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.3, S:K182E, ORF1b:R276S, Singapore +KP.1.1.4 Alias of B.1.1.529.2.86.1.1.11.1.1.1.4, S:R214H, C11866T, C23929T,from sars-cov-2-variants/lineage-proposals#1593 +KP.1.1.5 Alias of B.1.1.529.2.86.1.1.11.1.1.1.5, S:F59S +KP.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.2, S:T572I +KP.2 Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 +KP.2.1 Alias of B.1.1.529.2.86.1.1.11.1.2.1, S:Q1201K, from sars-cov-2-variants/lineage-proposals#1440 +KP.2.2 Alias of B.1.1.529.2.86.1.1.11.1.2.2, S:F59L, S:K1266R, from sars-cov-2-variants/lineage-proposals#1446 +KP.2.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:H146Q, ORF3a:K67N, S:31del +KP.2.3.1 Alias of B.1.1.529.2.86.1.1.11.1.2.3.1, S:A475V +KP.2.3.2 Alias of B.1.1.529.2.86.1.1.11.1.2.3.2, S:G184V +KP.2.3.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3.3, S:N185T +KP.2.3.4 Alias of B.1.1.529.2.86.1.1.11.1.2.3.4, S:445P, A15759G, C27804T +KP.2.4 Alias of B.1.1.529.2.86.1.1.11.1.2.4, S:T250N +KP.2.5 Alias of B.1.1.529.2.86.1.1.11.1.2.5, S:N185D +KP.2.6 Alias of B.1.1.529.2.86.1.1.11.1.2.6, S:W64R +KP.2.7 Alias of B.1.1.529.2.86.1.1.11.1.2.7, S:S31F, after T22795G +KP.2.8 Alias of B.1.1.529.2.86.1.1.11.1.2.8, S:S60P +KP.2.9 Alias of B.1.1.529.2.86.1.1.11.1.2.9, S:T572I +KP.2.10 Alias of B.1.1.529.2.86.1.1.11.1.2.10, S:F59S, Singapore +KP.2.11 Alias of B.1.1.529.2.86.1.1.11.1.2.11, S:F56V, ORF1a:T2093I, England +KP.2.12 Alias of B.1.1.529.2.86.1.1.11.1.2.12, S:V1176F, G25088T, Australia +KP.2.13 Alias of B.1.1.529.2.86.1.1.11.1.2.13, S:K478E, N:P6T, C9565T, C24553T, USA/Canada +KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:G184V, S:S31F +KP.2.15 Alias of B.1.1.529.2.86.1.1.11.1.2.15, A10861G, S:31del, USA/Canada +KP.2.16 Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S +KP.2.17 Alias of B.1.1.529.2.86.1.1.11.1.2.17, S:G35R, C23758T, C7765T, T14418C, Singapore +KP.3 Alias of B.1.1.529.2.86.1.1.11.1.3, S:Q493E, from sars-cov-2-variants/lineage-proposals#1410 +KP.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1, G15372T, A19722G +KP.3.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain +MC.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I +KP.3.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.2, S:S151I，from sars-cov-2-variants/lineage-proposals#1589 +KP.3.1.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.3, S:S31F,from sars-cov-2-variants/lineage-proposals#1576 +KP.3.1.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4, ORF1b:P1675S,from #2627 +MM.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.1, S:S680P, Europe +MM.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4.2, S:G35R, S:N185D +KP.3.1.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.5, S:N556K, ORF1a:Q998H, ORF3a:I186V, England +KP.3.1.6 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6, T19305C +MK.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.1, S:S31F, UK +MK.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.2, S:D745G, after E:L21F +KP.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2, A2611C, C22858T +KP.3.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore +KP.3.2.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2.2, S:W258R +KP.3.2.3 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3, ORF3a:S40P, C11518T +LW.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3.1, S:K182E, England +KP.3.2.4 Alias of B.1.1.529.2.86.1.1.11.1.3.2.4, ORF3a:L73F +KP.3.2.5 Alias of B.1.1.529.2.86.1.1.11.1.3.2.5, S:V62F +KP.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3, N:R204P +KP.3.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.1, S:T547K, ORF3a:F87S +KP.3.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.2, S:A435S, ORF1a:N4134T, England/Canada +KP.3.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3, G9424T, Japan/Canada +ML.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.1, S:681H +ML.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.2, S:Q677H, USA +KP.3.4 Alias of B.1.1.529.2.86.1.1.11.1.3.4, ORF3a:L73F, C25521T, Asia +KP.3.4.1 Alias of B.1.1.529.2.86.1.1.11.1.3.4.1, S:S31F, N:A134V, ORF1a:E1192K +KP.3.5 Alias of B.1.1.529.2.86.1.1.11.1.3.5, S:G213E, most with C1420T, America +KP.4 Alias of B.1.1.529.2.86.1.1.11.1.4, C6070T, India +KP.4.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1, S:R346T, C19884T +KP.4.1.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1.1, S:W258R, India +KP.4.1.2 Alias of B.1.1.529.2.86.1.1.11.1.4.1.2, S:L441V +KP.4.1.3 Alias of B.1.1.529.2.86.1.1.11.1.4.1.3, ORF1a:M598V, A5245G, S:31del +KP.4.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2, S:R346T, S:K187R +KP.4.2.1 Alias of B.1.1.529.2.86.1.1.11.1.4.2.1, S:S31F +KP.4.2.2 Alias of B.1.1.529.2.86.1.1.11.1.4.2.2, S:F59I +KP.4.2.3 Alias of B.1.1.529.2.86.1.1.11.1.4.2.3, S:G35R, ORF1a:G519S, ORF1a:I2227V +KP.5 Alias of B.1.1.529.2.86.1.1.11.1.5, S:T572I +JN.1.12 Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253 +JN.1.13 Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464 +JN.1.13.1 Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386 +KS.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 +KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, Singapore/Taiwan/Canada +KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.2, S:T678I, Russia +KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.3, S:V642A, Dominican Republic +JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA +JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V +JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador +LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T, after C19269T +LU.2 Alias of B.1.1.529.2.86.1.1.15.1.2, S:R346T, after T20865C +JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 +JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 +LF.1 Alias of B.1.1.529.2.86.1.1.16.1.1, ORF1a:A1268T, ORF1a:S2103F +LF.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1, S:P1263L +LF.1.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1.1, S:S31-, T19209C,from sars-cov-2-variants/lineage-proposals#1502 +LF.2 Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S31del +LF.3 Alias of B.1.1.529.2.86.1.1.16.1.3, ORF1a:A4285V, Peru +LF.3.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P，from sars-cov-2-variants/lineage-proposals#1558 +LF.3.1.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO +LF.4 Alias of B.1.1.529.2.86.1.1.16.1.4, N:R385K, ORF1a:T4368I +LF.4.1 Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29* +LF.5 Alias of B.1.1.529.2.86.1.1.16.1.5, S:T33A, S:N185D, C28660T +JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T +LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T +LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I +JN.1.16.3 Alias of B.1.1.529.2.86.1.1.16.3, S:T572I +JN.1.17 Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA +JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 +JN.1.18.1 Alias of B.1.1.529.2.86.1.1.18.1, S:T250N, from sars-cov-2-variants/lineage-proposals#1414 +LQ.1 Alias of B.1.1.529.2.86.1.1.18.1.1, S:F456L (22928C),from #2596 +LQ.1.1 Alias of B.1.1.529.2.86.1.1.18.1.1.1, S:P272H,from #2596 +LQ.2 Alias of B.1.1.529.2.86.1.1.18.1.2, S:N556K, China,from sars-cov-2-variants/lineage-proposals#1414 +LQ.3 Alias of B.1.1.529.2.86.1.1.18.1.3, ORF1a:T1761I, Russia +JN.1.18.2 Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C, from sars-cov-2-variants/lineage-proposals#1441 +LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V +LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S +JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G) +MA.1 Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del +JN.1.18.4 Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana from #2567 +LH.1 Alias of B.1.1.529.2.86.1.1.18.4.1, S:K182I from #2567 +LH.2 Alias of B.1.1.529.2.86.1.1.18.4.2, S:I197V, S:P251H from #2567 +JN.1.18.5 Alias of B.1.1.529.2.86.1.1.18.5, S:F456L (T22930A) +LS.1 Alias of B.1.1.529.2.86.1.1.18.5.1, S:Y28H, S:L189A, S:184-188del, ORF1a:E940D +JN.1.18.6 Alias of B.1.1.529.2.86.1.1.18.6, S:F456L (T22928C), S:F59S +LY.1 Alias of B.1.1.529.2.86.1.1.18.6.1, S:F65Y, S:Q183P +LY.2 Alias of B.1.1.529.2.86.1.1.18.6.2, S:Q183H, C2143T +JN.1.18.7 Alias of B.1.1.529.2.86.1.1.18.7, S:T22N, S:F59S, S:D1260Y +MN.1 Alias of B.1.1.529.2.86.1.1.18.7.1, S:D80Y, S:P174S, S:S689N, England/Wales +JN.1.19 Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V +JN.1.20 Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy +JN.1.21 Alias of B.1.1.529.2.86.1.1.21, S:H1058Y, from sars-cov-2-variants/lineage-proposals#1162 +JN.1.22 Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T, from #2465 +JN.1.23 Alias of B.1.1.529.2.86.1.1.23, S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488 +JN.1.23.1 Alias of B.1.1.529.2.86.1.1.23.1, S:V1264L, S:N137K, Brazil +JN.1.24 Alias of B.1.1.529.2.86.1.1.24, S:C1243F, USA +JN.1.24.1 Alias of B.1.1.529.2.86.1.1.24.1, S:R346T +JN.1.25 Alias of B.1.1.529.2.86.1.1.25, C706T, A7708T, India +JN.1.25.1 Alias of B.1.1.529.2.86.1.1.25.1, S:R346T, India +LM.1 Alias of B.1.1.529.2.86.1.1.25.1.1, S:F456L +JN.1.26 Alias of B.1.1.529.2.86.1.1.26, S:R346T, after C26894T, USA, from sars-cov-2-variants/lineage-proposals#1089 +JN.1.27 Alias of B.1.1.529.2.86.1.1.27, S:M153I, after C26894T, C25680T, USA, from sars-cov-2-variants/lineage-proposals#1403 +JN.1.28 Alias of B.1.1.529.2.86.1.1.28, C24034T, A29700G, East Asia/Oceania +JN.1.28.1 Alias of B.1.1.529.2.86.1.1.28.1, ORF1a:P1640L, C19545T, C24370T, from sars-cov-2-variants/lineage-proposals#1244 +KW.1 Alias of B.1.1.529.2.86.1.1.28.1.1, S:T572I, Australia, from sars-cov-2-variants/lineage-proposals#1244 +KW.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1, S:F456L, ORF1b:R2009K, Australia/Japan, from sars-cov-2-variants/lineage-proposals#1244 +KW.1.1.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1, S:T95S, Australia +LG.1 Alias of B.1.1.529.2.86.1.1.28.1.1.1.1.1, S:R346T, Australia +KW.1.2 Alias of B.1.1.529.2.86.1.1.28.1.1.2, S:K529T, Australia +JN.1.29 Alias of B.1.1.529.2.86.1.1.29, ORF1a:T3224A, after C2644T, Brazil +JN.1.29.1 Alias of B.1.1.529.2.86.1.1.29.1, S:F456L +MJ.1 Alias of B.1.1.529.2.86.1.1.29.1.1.1, S:R346T, S:S31P, ORF1a:E2070K +JN.1.30 Alias of B.1.1.529.2.86.1.1.30, G21255T +JN.1.30.1 Alias of B.1.1.529.2.86.1.1.30.1, S:R346T, after T7789C, India, from sars-cov-2-variants/lineage-proposals#1089 +KU.1 Alias of B.1.1.529.2.86.1.1.30.1.1, S:K182Q +KU.2 Alias of B.1.1.529.2.86.1.1.30.1.2, S:F456L, from sars-cov-2-variants/lineage-proposals#1089 +JN.1.31 Alias of B.1.1.529.2.86.1.1.31, ORF3a:V13L, C19186T, from sars-cov-2-variants/lineage-proposals#1319 +JN.1.32 Alias of B.1.1.529.2.86.1.1.32, S:T572I, directly on JN.1 polytomy +JN.1.32.1 Alias of B.1.1.529.2.86.1.1.32.1, S:Q183H +JN.1.34 Alias of B.1.1.529.2.86.1.1.34, S:S704L +JN.1.35 Alias of B.1.1.529.2.86.1.1.35, S:S680Y, after T18471C, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#1362 +JN.1.36 Alias of B.1.1.529.2.86.1.1.36, S:Q677H, after A29086T, from sars-cov-2-variants/lineage-proposals#1326 +JN.1.36.1 Alias of B.1.1.529.2.86.1.1.36.1, S:S680F, South Korea, from sars-cov-2-variants/lineage-proposals#1326 +JN.1.37 Alias of B.1.1.529.2.86.1.1.37, S:S680F +JN.1.38 Alias of B.1.1.529.2.86.1.1.38, ORF1b:R1736K, USA +JN.1.39 Alias of B.1.1.529.2.86.1.1.39, G2782T +JN.1.39.1 Alias of B.1.1.529.2.86.1.1.39.1, S:R346T, S:F456L, C21034T, T25631C, A16011G, T6913C +JN.1.39.2 Alias of B.1.1.529.2.86.1.1.39.2, S:R346T, T111C +JN.1.39.3 Alias of B.1.1.529.2.86.1.1.39.3, S:A67V, T111C, C5512T, China from #2498 (originally known as JN.1.33) +JN.1.40 Alias of B.1.1.529.2.86.1.1.40, S:S31P, Mexico, from sars-cov-2-variants/lineage-proposals#1451 +JN.1.41 Alias of B.1.1.529.2.86.1.1.41, S:S1252F, on A29086T, USA, from sars-cov-2-variants/lineage-proposals#1256 +JN.1.42 Alias of B.1.1.529.2.86.1.1.42, C5581A, South America +JN.1.42.1 Alias of B.1.1.529.2.86.1.1.42.1, S:F59S, from sars-cov-2-variants/lineage-proposals#1474 +JN.1.42.2 Alias of B.1.1.529.2.86.1.1.42.2, S:R346T, Peru from #2494 +JN.1.43 Alias of B.1.1.529.2.86.1.1.43, A25237G +JN.1.43.1 Alias of B.1.1.529.2.86.1.1.43.1, C19488T, C29218T, Brazil +JN.1.44 Alias of B.1.1.529.2.86.1.1.44, ORF6:P57L, from sars-cov-2-variants/lineage-proposals#987 +JN.1.44.1 Alias of B.1.1.529.2.86.1.1.44.1, S:R346T, Cameroon/France,from sars-cov-2-variants/lineage-proposals#1089 +JN.1.45 Alias of B.1.1.529.2.86.1.1.45, G18756T +JN.1.46 Alias of B.1.1.529.2.86.1.1.46, ORF1a:L3116F, T4885C +JN.1.47 Alias of B.1.1.529.2.86.1.1.47, C8074T, C7594T +JN.1.47.1 Alias of B.1.1.529.2.86.1.1.47.1, S:S221L, USA/Mexico +JN.1.47.2 Alias of B.1.1.529.2.86.1.1.47.2, S:T572I, S:R683Q, USA +JN.1.48 Alias of B.1.1.529.2.86.1.1.48, G29134T, after T18471C, India +JN.1.48.1 Alias of B.1.1.529.2.86.1.1.48.1, S:S60P, S:R346T, S:F456L, after ORF3a:A99V, on T3913A, C8092T branch from #2547 +LD.1 Alias of B.1.1.529.2.86.1.1.48.1.1, S:T572I from #2547 +JN.1.48.2 Alias of B.1.1.529.2.86.1.1.48.2, S:R346T, ORF1a:A427V, A3829G, India +JN.1.48.3 Alias of B.1.1.529.2.86.1.1.48.3, S:60P, S:R346T, S:F456L, ORF3a:S60F, ORF1a:T1761I, on T3913A, C8092T branch, South Africa +JN.1.49 Alias of B.1.1.529.2.86.1.1.49, ORF3a:T89I, India +JN.1.49.1 Alias of B.1.1.529.2.86.1.1.49.1, S:R346T +MB.1 Alias of B.1.1.529.2.86.1.1.49.1.1, S:F456V (T22928G), S:S31F +MB.1.1 Alias of B.1.1.529.2.86.1.1.49.1.1.1, S:ST22N, S:K182N +JN.1.49.2 Alias of B.1.1.529.2.86.1.1.49.2, S:F456L +JN.1.50 Alias of B.1.1.529.2.86.1.1.50, S:H445P,S:F456L, S:A67V, S:L249F, Europe from #2587 +JN.1.50.1 Alias of B.1.1.529.2.86.1.1.50.1, S:R346T from #2587 +JN.1.50.2 Alias of B.1.1.529.2.86.1.1.50.2, ORF1a:N1540S (A4884G, T4885C) +ME.1 Alias of B.1.1.529.2.86.1.1.50.2.1, S:R346K +JN.1.51 Alias of B.1.1.529.2.86.1.1.51, C4795T +JN.1.51.1 Alias of B.1.1.529.2.86.1.1.51.1, S:F456L +LJ.1 Alias of B.1.1.529.2.86.1.1.51.1.1, S:T22N +JN.1.52 Alias of B.1.1.529.2.86.1.1.52, ORF1a:K3353R +JN.1.53 Alias of B.1.1.529.2.86.1.1.53, C15720T, Senegal +JN.1.53.1 Alias of B.1.1.529.2.86.1.1.53.1, C583T +LN.1 Alias of B.1.1.529.2.86.1.1.53.1.1, S:R346T +LN.1.1 Alias of B.1.1.529.2.86.1.1.53.1.1.1, S:F456L, S:478I +JN.1.54 Alias of B.1.1.529.2.86.1.1.54, A9085G +JN.1.54.1 Alias of B.1.1.529.2.86.1.1.54.1, S:F456L, S:V407I, Spain, from #2584 +JN.1.55 Alias of B.1.1.529.2.86.1.1.55, ORF1a:K399R +JN.1.55.1 Alias of B.1.1.529.2.86.1.1.55.1, S:F456L, ORF1a:T1017I, Thailand +JN.1.55.2 Alias of B.1.1.529.2.86.1.1.55.2, S:F456L, ORF1b:P2321H, Brazil +JN.1.56 Alias of B.1.1.529.2.86.1.1.56, Orf3a:Q213K +JN.1.56.1 Alias of B.1.1.529.2.86.1.1.56.1, S:G181R, S:R346T, S:F456V, ORF1a:T1638I, Sinapore/South Korea from #2582 +JN.1.57 Alias of B.1.1.529.2.86.1.1.57, ORF1b:A1219S, A11947G +JN.1.57.1 Alias of B.1.1.529.2.86.1.1.57.1, S:S60P, Taiwan/South Korea,from sars-cov-2-variants/lineage-proposals#1460 +JN.1.58 Alias of B.1.1.529.2.86.1.1.58, ORF1b:K2557R +JN.1.58.1 Alias of B.1.1.529.2.86.1.1.58.1, S:S60P +JN.1.58.2 Alias of B.1.1.529.2.86.1.1.58.2, S:R346T +LR.1 Alias of B.1.1.529.2.86.1.1.58.2.1, S:F456L (22928C) +LR.2 Alias of B.1.1.529.2.86.1.1.58.2.2, S:F456V +JN.1.58.3 Alias of B.1.1.529.2.86.1.1.58.3, S:S31F +JN.1.59 Alias of B.1.1.529.2.86.1.1.59, ORF1a:A1204S +JN.1.60 Alias of B.1.1.529.2.86.1.1.60, C4543T +JN.1.61 Alias of B.1.1.529.2.86.1.1.61, S:K444R, Brazil +JN.1.62 Alias of B.1.1.529.2.86.1.1.62, S:F456L (22928C), S:V62F, S:R681H +JN.1.63 Alias of B.1.1.529.2.86.1.1.63, ORF1b:K82R +JN.1.63.1 Alias of B.1.1.529.2.86.1.1.63.1, ORF1a:D1513E, ORF1a:A2529S, Asia +JN.1.64 Alias of B.1.1.529.2.86.1.1.64, ORF1a:N2147S (A6705G) +JN.1.64.1 Alias of B.1.1.529.2.86.1.1.64.1, S:R346T +MD.1 Alias of B.1.1.529.2.86.1.1.64.1.1, S:F456L (T22930A) +MD.1.1 Alias of B.1.1.529.2.86.1.1.64.1.1.1, S:K679R +MD.2 Alias of B.1.1.529.2.86.1.1.64.1.2, S:F456V, ORF1a:T2800I +MD.3 Alias of B.1.1.529.2.86.1.1.64.1.3, C1060T, C9319T, C28657T +MD.3.1 Alias of B.1.1.529.2.86.1.1.64.1.3.1, S:F456L (T22928C), ORF3a:L106F, C10138T, South Africa +JN.1.65 Alias of B.1.1.529.2.86.1.1.65, S:T572I, after T23629C, G25647T, A5053G, Spain +JN.1.65.1 Alias of B.1.1.529.2.86.1.1.65.1, S:F456L (22928C), A10420G, C5884T, C29149T, C20483T, Spain +MF.1 Alias of B.1.1.529.2.86.1.1.65.1.1, S:R346T, T21673C, pre-22981T +MF.2 Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L +JN.1.66 Alias of B.1.1.529.2.86.1.1.66, S:H445P, S:F456L (T22930A), S:T1117I, ORF1a:L2146F, ORF3a:L106F, Iceland/Sweden +JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 +JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia +JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 +JN.2.2.1 Alias of B.1.1.529.2.86.1.2.2.1, S:N487D, Netherlands +JN.2.3 Alias of B.1.1.529.2.86.1.2.3, S:V193L, from #2442 +JN.2.4 Alias of B.1.1.529.2.86.1.2.4, S:L242F, Sweden +JN.2.5 Alias of B.1.1.529.2.86.1.2.5, S:L455S, Canada, USA, Lithuania, from sars-cov-2-variants/lineage-proposals#1173 +JN.3 Alias of B.1.1.529.2.86.1.3, ORF1a:T2087I, Europe, from sars-cov-2-variants/lineage-proposals#892 +JN.3.1 Alias of B.1.1.529.2.86.1.3.1, S:L922F, ORF7a:T28I, Spain +JN.3.2 Alias of B.1.1.529.2.86.1.3.2, N:H300Y, ORF1a:P892S, from #2445 +JN.3.2.1 Alias of B.1.1.529.2.86.1.3.2.1, S:F456V, N:S327L, Germany, from #2445 +JN.3.3 Alias of B.1.1.529.2.86.1.3.3, A5641G, C14478T, C21676T +JN.4 Alias of B.1.1.529.2.86.1.4, S:A475V, lacking C12815T of most BA.2.86.1, Belgium/Netherlands/Denmark, from sars-cov-2-variants/lineage-proposals#1009 +JN.5 Alias of B.1.1.529.2.86.1.5, N:T135I +JN.5.1 Alias of B.1.1.529.2.86.1.5.1, S:A475S, T2950A, A28052G, C29541T, England/Belgium, from sars-cov-2-variants/lineage-proposals#954 +JN.6 Alias of B.1.1.529.2.86.1.6, S:V193L +JN.7 Alias of B.1.1.529.2.86.1.7, S:G594S, Denmark, from sars-cov-2-variants/lineage-proposals#856 +JN.8 Alias of B.1.1.529.2.86.1.8, S:T299I, Sweden/Denmark +JN.9 Alias of B.1.1.529.2.86.1.9, S:M1229I, Netherlands +JN.10 Alias of B.1.1.529.2.86.1.10, S:A475V, on T3565C branch with JN.1, Spain/France, from sars-cov-2-variants/lineage-proposals#954 +JN.11 Alias of B.1.1.529.2.86.1.11, S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303 +JN.11.1 Alias of B.1.1.529.2.86.1.11.1, S:L455S +JN.12 Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G, from sars-cov-2-variants/lineage-proposals#1102 +JN.13 Alias of B.1.1.529.2.86.1.13, A14397G +JN.13.1 Alias of B.1.1.529.2.86.1.13.1, S:A475V, USA/Malaysia, from sars-cov-2-variants/lineage-proposals#1386 +JN.14 Alias of B.1.1.529.2.86.1.14, C29614T, S:S680F, Thailand/Japan，from #2424 +JN.15 Alias of B.1.1.529.2.86.1.15, C24319T, Japan +JN.16 Alias of B.1.1.529.2.86.1.16, ORF3a:T229I, Japan +JN.17 Alias of B.1.1.529.2.86.1.17, C12781T, Japan +JN.18 Alias of B.1.1.529.2.86.1.18, T11614C +JN.19 Alias of B.1.1.529.2.86.1.19, A14601G, Japan +BA.2.86.2 Alias of B.1.1.529.2.86.2, ORF7a:E22D, South Africa/Botswana，from sars-cov-2-variants/lineage-proposals/issues/756 +BA.2.86.3 Alias of B.1.1.529.2.86.3, C222T, C1960T, T12775C, South Africa +JQ.1 Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa, from sars-cov-2-variants/lineage-proposals#906 +JQ.2 Alias of B.1.1.529.2.86.3.2, S:R346T, G2944A, South Africa, from #2505 +JQ.2.1 Alias of B.1.1.529.2.86.3.2.1, S:L455S, South Africa, from sars-cov-2-variants/lineage-proposals#1373 +JQ.2.1.1 Alias of B.1.1.529.2.86.3.2.1.1, S:F456L, South Africa +BA.2.86.4 Alias of B.1.1.529.2.86.4, S:A222V, ORF1a:V3892A, from sars-cov-2-variants/lineage-proposals#1032 +BA.2.86.5 Alias of B.1.1.529.2.86.5, S:I197V, C5575T, T6085C, T23278C +BA.2.86.6 Alias of B.1.1.529.2.86.6, C9226T +LV.1 Alias of B.1.1.529.2.86.6.1, ORF1b:D294N +LV.2 Alias of B.1.1.529.2.86.6.2, S:R346T, S:L455S, S:F456L, ORF1a:E148G, ORF1a:W630C, ORF1a:G1069R, ORF1a:G3546D, ORF1b:A520V +BA.2.86.7 Alias of B.1.1.529.2.86.7, ORF1b:Y1344H, T10819C, C28720T, South Africa +BA.2.87 Alias of B.1.1.529.2.87, C18744T, no C9866T +BA.2.87.1 Alias of B.1.1.529.2.87.1, saltation with 15+ spike AA mutations, South Africa, from #2484 +BA.3 Alias of B.1.1.529.3, from #367 +BA.3.1 Alias of B.1.1.529.3.1, mainly found in Poland, from #540 +BA.4 Alias of B.1.1.529.4, from #517 +BA.4.1 Alias of B.1.1.529.4.1, mainly found in South Africa, from #548 +BA.4.1.1 Alias of B.1.1.529.4.1.1, mainly found in South Africa and Germany, from #667 +BA.4.1.2 Alias of B.1.1.529.4.1.2, Austria lineage, from #614 +BA.4.1.3 Alias of B.1.1.529.4.1.3, Israel lineage +BA.4.1.4 Alias of B.1.1.529.4.1.4, Israel lineage +BA.4.1.5 Alias of B.1.1.529.4.1.5, Israel lineage +BA.4.1.6 Alias of B.1.1.529.4.1.6, USA lineage +BA.4.1.7 Alias of B.1.1.529.4.1.7, Australia lineage +BA.4.1.8 Alias of B.1.1.529.4.1.8, mainly found in England, USA, South Africa and Mexico, from #800 +BA.4.1.9 Alias of B.1.1.529.4.1.9, mainly found in Zambia, USA, England and Mexico, from #926 +BA.4.1.10 Alias of B.1.1.529.4.1.10, mainly found in France, defined by S:N354D, S:R346T, from #1073 +BA.4.1.11 Alias of B.1.1.529.4.1.11 found mainly in Denmark, from #1606 +CS.1 Alias of B.1.1.529.4.1.10.1, Denmark, Netherlands, England, defined by S:K444R +BA.4.2 Alias of B.1.1.529.4.2, USA lineage +BA.4.3 Alias of B.1.1.529.4.3, Israel lineage +BA.4.4 Alias of B.1.1.529.4.4, USA lineage +BA.4.5 Alias of B.1.1.529.4.5, Australia lineage +BA.4.6 Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from #741 +BA.4.6.1 Alias of B.1.1.529.4.6.1, mainly found in UK, USA and Germany, from #900 +BA.4.6.2 Alias of B.1.1.529.4.6.2, Dominican Republic, USA, defined by S:V445A, from #1198 +BA.4.6.3 Alias of B.1.1.529.4.6.3, defined by S:444N, S:460K, S:144-, from #1195 +BA.4.6.4 Alias of B.1.1.529.4.6.4, Oceania, defined by ORF7a:Q62H +BA.4.6.5 Alias of B.1.1.529.4.6.5, global, defined by ORF9b:N36S +DC.1 Alias of B.1.1.529.4.6.5.1, global, defined by S:N460S +BA.4.7 Alias of B.1.1.529.4.7, mainly found in England, South Africa and Scotland, from #777 +BA.4.8 Alias of B.1.1.529.4.8, mainly South Africa and Eswatini, from #670 +BA.5 Alias of B.1.1.529.5, from #517 +BA.5.1 Alias of B.1.1.529.5.1, Portugal lineage +BA.5.1.1 Alias of B.1.1.529.5.1.1, USA lineage +BA.5.1.2 Alias of B.1.1.529.5.1.2, mainly found in Denmark, Portugal and Luxembourg, from #790 +BA.5.1.3 Alias of B.1.1.529.5.1.3, mainly found in Germany Portugal and Spain, from #765 +BA.5.1.4 Alias of B.1.1.529.5.1.4, mainly found in Denmark and England, from #801 +BA.5.1.5 Alias of B.1.1.529.5.1.5, mainly found in UK, Denmark, and Belgium, from #835 +BA.5.1.6 Alias of B.1.1.529.5.1.6, Mexico lineage +BA.5.1.7 Alias of B.1.1.529.5.1.7, Canada lineage +BA.5.1.8 Alias of B.1.1.529.5.1.8, Peru lineage +BA.5.1.9 Alias of B.1.1.529.5.1.9, mainly found in England, Luxembourg, Scotland and Ireland, from #786 +BA.5.1.10 Alias of B.1.1.529.5.1.10, mainly found in USA, Italy and England, from #901 +BK.1 Alias of B.1.1.529.5.1.10.1, mainly found in USA, and Canada, from #901 +BA.5.1.11 Alias of B.1.1.529.5.1.11, mainly found in Denmark, from #908 +BA.5.1.12 Alias of B.1.1.529.5.1.12, mainly found in Spain, from #902 +BA.5.1.14 Alias of B.1.1.529.5.1.14, mainly found in Brazil +BA.5.1.15 Alias of B.1.1.529.5.1.15, Peru and Brazil lineage +DL.1 Alias of B.1.1.529.5.1.15.1, found mainly in Brazil and USA, from #1376 +BA.5.1.16 Alias of B.1.1.529.5.1.16, Japan lineage +BA.5.1.17 Alias of B.1.1.529.5.1.17, France lineage +BA.5.1.18 Alias of B.1.1.529.5.1.18, mainly found in USA, from #930 +BA.5.1.19 Alias of B.1.1.529.5.1.19, mainly found in Netherlands, Germany, USA, and England, from #999 +BA.5.1.20 Alias of B.1.1.529.5.1.20, mainly found in USA and Belgium, from #1000 +BA.5.1.21 Alias of B.1.1.529.5.1.21, mainly found in Gambia and Japan, from #958 +BT.1 Alias of B.1.1.529.5.1.21.1, mainly found in Japan, from #958 +BT.2 Alias of B.1.1.529.5.1.21.2, mainly found in Denmark, Germany and France, from #1192 +BA.5.1.22 Alias of B.1.1.529.5.1.22, mainly found in Europe, defined by ORF1b:S1273L, from #1135 +DH.1 Alias of B.1.1.529.5.1.22.1, found mainly in Denmark, from #1242 +BA.5.1.23 Alias of B.1.1.529.5.1.23, mainly found in Spain, defined by ORF1a:S302F, from #1135 +DE.1 Alias of B.1.1.529.5.1.23.1, S:A694V +DE.2 Alias of B.1.1.529.5.1.23.2, S:R346T, S:G181V, T4579A +BA.5.1.24 Alias of B.1.1.529.5.1.24, mainly found in Finland, defined by ORF1b:V1271L, from #1135 +BA.5.1.25 Alias of B.1.1.529.5.1.25, mainly found in Mexico and Peru, defined by ORF7b:H42Y, from #1135 +DJ.1 Alias of B.1.1.529.5.1.25.1, found mainly in Peru, from #1245 +DJ.1.1 Alias of B.1.1.529.5.1.25.1.1, found in Peru, from #1245 +DJ.1.1.1 Alias of B.1.1.529.5.1.25.1.1.1 found mainly in Peru and USA, from #1407 +DJ.1.2 Alias of B.1.1.529.5.1.25.1.2, found mainly in Peru, from #1379 +DJ.1.3 Alias of B.1.1.529.5.1.25.1.3 found mainly in Peru, Colombia and USA, from #1409 +BA.5.1.26 Alias of B.1.1.529.5.1.26, mainly found in Czechia, defined by S:R346T, from #869 +CU.1 Alias of B.1.1.529.5.1.26.1, Central/Eastern Europe, S:T95I, S:T547K +BA.5.1.27 Alias of B.1.1.529.5.1.27, mainly found in North America, defined by S:R346T +BA.5.1.28 Alias of B.1.1.529.5.1.28, mainly found in North America, defined by S:R346T (and A18480G) +BA.5.1.29 Alias of B.1.1.529.5.1.29, mainly found in Russia, Germany and Estonia, from #1060 +CL.1 Alias of B.1.1.529.5.1.29.1, S:150E and S:460K, from #1187 +CL.1.1 Alias of B.1.1.529.5.1.29.1.1, S:P1162L +CL.1.2 Alias of B.1.1.529.5.1.29.1.2, S:T883I +CL.1.3 Alias of B.1.1.529.5.1.29.1.3, S:S71F +BA.5.1.30 Alias of B.1.1.529.5.1.30, ORF6:D6G +BA.5.1.31 Alias of B.1.1.529.5.1.31, found mainly in France and Denmark, from #991 +BA.5.1.32 Alias of B.1.1.529.5.1.32, found mainly in Germany and China, from #1488 +BA.5.1.33 Alias of B.1.1.529.5.1.33, S:V1264L +EQ.1 Alias of B.1.1.529.5.1.33.1 S:Q14H, found mainly in Germany, France, Japan and Denmark, from #1522 +BA.5.1.34 Alias of B.1.1.529.5.1.34, Denmark, S:P1162S +BA.5.1.35 Alias of B.1.1.529.5.1.35, ORF1a:I1525M +EB.1 Alias of B.1.1.529.5.1.35.1, USA, S:R346T +BA.5.1.36 Alias of B.1.1.529.5.1.36, USA, S:R346T, S:G261V +BA.5.1.37 Alias of B.1.1.529.5.1.37, S:R346T, S:Y248N +BA.5.1.38 Alias of B.1.1.529.5.1.38, Japan, ORF8:S103L, S:R346T +BA.5.2 Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from #551 +BA.5.2.1 Alias of B.1.1.529.5.2.1, mainly found in South Africa, England and USA, from #657 +BF.1 Alias of B.1.1.529.5.2.1.1, mainly found in England, Denmark, Spain and Scotland, from #618 +BF.1.1 Alias of B.1.1.529.5.2.1.1.1, USA lineage +BF.2 Alias of B.1.1.529.5.2.1.2, Denmark lineage +BF.3 Alias of B.1.1.529.5.2.1.3, India lineage +BF.3.1 Alias of B.1.1.529.5.2.1.3.1, mainly found India, Singapore, and USA, from #825 +BF.4 Alias of B.1.1.529.5.2.1.4, mainly found in England, from #788 +BF.5 Alias of B.1.1.529.5.2.1.5, Israel lineage +BF.5.1 Alias of B.1.1.529.5.2.1.5.1 found mainly in Japan and Israel, from #1475 +BF.5.2 Alias of B.1.1.529.5.2.1.5.2 found mainly in Japan, from #1476 +BF.5.3 Alias of B.1.1.529.5.2.1.5.3 found mainly in Japan, from #1526 +BF.5.4 Alias of B.1.1.529.5.2.1.5.4 Japan, ORF1a:K3839R +BF.5.5 Alias of B.1.1.529.5.2.1.5.5 Europe, S:K147N +BF.6 Alias of B.1.1.529.5.2.1.6, mainly found in England and Scotland, from #821 +BF.7 Alias of B.1.1.529.5.2.1.7, mainly found in Belgium, England and Denmark, from #827 +BF.7.1 Alias of B.1.1.529.5.2.1.7.1, mainly found in Germany, S:G261V, from #1132 +BF.7.2 Alias of B.1.1.529.5.2.1.7.2, Denmark, S:H1101Y and S:V486I, from #1216 +BF.7.3 Alias of B.1.1.529.5.2.1.7.3, France/Czechia, S:K182E +BF.7.4 Alias of B.1.1.529.5.2.1.7.4, Europe, ORF8:H17Y +BF.7.4.1 Alias of B.1.1.529.5.2.1.7.4.1, found mainly in USA and Netherlands, from #1253 +BF.7.4.2 Alias of B.1.1.529.5.2.1.7.4.2, Europe +BF.7.4.3 Alias of B.1.1.529.5.2.1.7.4.3, Japan, S:F157L, N:A90S, from #1743 +BF.7.5 Alias of B.1.1.529.5.2.1.7.5, Europe, ORF1b:P1427L +BF.7.5.1 Alias of B.1.1.529.5.2.1.7.5.1, found mainly in Germany and Denmark, from #1317 +BF.7.6 Alias of B.1.1.529.5.2.1.7.6, Europe, ORF3a:E239D +BF.7.7 Alias of B.1.1.529.5.2.1.7.7, Europe, S:D80G, from #1147 +BF.7.8 Alias of B.1.1.529.5.2.1.7.8, Europe, S:T883I +BF.7.9 Alias of B.1.1.529.5.2.1.7.9, Europe, S:Q677H +BF.7.10 Alias of B.1.1.529.5.2.1.7.10, Europe, S:Q1201K +BF.7.11 Alias of B.1.1.529.5.2.1.7.11, Europe, S:D1260Y +BF.7.12 Alias of B.1.1.529.5.2.1.7.12, Europe, S:A942S +BF.7.13 Alias of B.1.1.529.5.2.1.7.13, Belgium, ORF1a:H388Y, ORF1a:H1160Y, +BF.7.13.1 Alias of B.1.1.529.5.2.1.7.13.1, Europe, S:T430I, S:P681Y +BF.7.13.2 Alias of B.1.1.529.5.2.1.7.13.2, Poland, S:A653V +BF.7.14 Alias of B.1.1.529.5.2.1.7.14, China, S:C1243F, from #1470 +BF.7.14.1 Alias of B.1.1.529.5.2.1.7.14.1 found mainly in China and Japan, contains S:V83F branch, from #1580 +BF.7.14.2 Alias of B.1.1.529.5.2.1.7.14.2 China, S:Q14H +BF.7.14.3 Alias of B.1.1.529.5.2.1.7.14.3 China, S:A626V, from #1573 +BF.7.14.4 Alias of B.1.1.529.5.2.1.7.14.4 China, ORF1a:T1844I +BF.7.14.5 Alias of B.1.1.529.5.2.1.7.14.5 China, C20703T, from #1607 +BF.7.14.6 Alias of B.1.1.529.5.2.1.7.14.6 China, C1973T +BF.7.14.7 Alias of B.1.1.529.5.2.1.7.14.7 found mainly in China, from #1672 +BF.7.15 Alias of B.1.1.529.5.2.1.7.15, Japan, S:G257D & ORF1a:A1812V, from #1358 +BF.7.16 Alias of B.1.1.529.5.2.1.7.16, ORF1a:A498V +BF.7.16.1 Alias of B.1.1.529.5.2.1.7.16.1, Canada, S:A688V +BF.7.17 Alias of B.1.1.529.5.2.1.7.17, Japan/Germany, S:A688V, S:G1167S +BF.7.18 Alias of B.1.1.529.5.2.1.7.18, South Korea, S:K97N +BF.7.19 Alias of B.1.1.529.5.2.1.7.19, ORF7a:R118S +BF.7.19.1 Alias of B.1.1.529.5.2.1.7.19.1, Japan, T7111C,C1915T,C16470T,A26219G on ORF8:T87I branch +BF.7.20 Alias of B.1.1.529.5.2.1.7.20, G15543T +BF.7.21 Alias of B.1.1.529.5.2.1.7.21, C28603T +BF.7.22 Alias of B.1.1.529.5.2.1.7.22, ORF8:V81I +BF.7.23 Alias of B.1.1.529.5.2.1.7.23, ORF1b:T239I +BF.7.24 Alias of B.1.1.529.5.2.1.7.24, T10939C +BF.7.26 Alias of B.1.1.529.5.2.1.7.26, G20679A +BF.7.27 Alias of B.1.1.529.5.2.1.7.27, C8752T, sibling of BF.7.14 +BF.8 Alias of B.1.1.529.5.2.1.8, USA lineage +BF.9 Alias of B.1.1.529.5.2.1.9, Canada lineage +BF.10 Alias of B.1.1.529.5.2.1.10, USA lineage +BF.10.1 Alias of B.1.1.529.5.2.1.10.1, found mainly in USA and Mexico, from #1442 +BF.11 Alias of B.1.1.529.5.2.1.11, mainly found in England, S:R346T, from #837 +BF.11.1 Alias of B.1.1.529.5.2.1.11.1, England, S:S1252F +BF.11.2 Alias of B.1.1.529.5.2.1.11.2, Wales, S:K147N +BF.11.3 Alias of B.1.1.529.5.2.1.11.3, ORF1a:L122F +BF.11.4 Alias of B.1.1.529.5.2.1.11.4, England, S:S704L +BF.11.5 Alias of B.1.1.529.5.2.1.11.5, England, ORF8:I121L +BF.12 Alias of B.1.1.529.5.2.1.12, mainly found Austria, Brazil, and England, from #752 +BF.13 Alias of B.1.1.529.5.2.1.13, mainly found in USA, from #883 +BF.14 Alias of B.1.1.529.5.2.1.14, mainly found in Austria, from #843 +BF.15 Alias of B.1.1.529.5.2.1.15, Sri Lanka lineage, from #893 +BF.16 Alias of B.1.1.529.5.2.1.16, found in USA, from #942 +BF.17 Alias of B.1.1.529.5.2.1.17, Australia lineage +BF.18 Alias of B.1.1.529.5.2.1.18, Australia lineage +BF.19 Alias of B.1.1.529.5.2.1.19, Greece lineage +BF.20 Alias of B.1.1.529.5.2.1.20, lineage in Kenya and other countries +BF.21 Alias of B.1.1.529.5.2.1.21, USA lineage +BF.22 Alias of B.1.1.529.5.2.1.22, mainly found in Japan, from #1010 +BF.23 Alias of B.1.1.529.5.2.1.23, mainly found in Czechia, from #1036 +BF.24 Alias of B.1.1.529.5.2.1.24, mainly found in Indonesia, defined by ORF1a:G683C on S:1020S branch +BF.25 Alias of B.1.1.529.5.2.1.25, USA lineage, defined by S:445A and C18657T +BF.26 Alias of B.1.1.529.5.2.1.26, North America lineage, defined by ORF1b:G376S, on C5284T branch, from #1142 +BF.27 Alias of B.1.1.529.5.2.1.27, Singapore lineage, defined by ORF1a:A2784V, from #1140 +BF.28 Alias of B.1.1.529.5.2.1.28, Singapore lineage, defined by ORF1a:Q44L, from #1141 +BF.29 Alias of B.1.1.529.5.2.1.29, mainly found in Denmark and USA, from #1162 +BF.30 Alias of B.1.1.529.5.2.1.30, South Africa/England, defined by S:R346T after C25916T, C14599T +BF.31 Alias of B.1.1.529.5.2.1.31, Chile, 23758T +BF.31.1 Alias of B.1.1.529.5.2.1.31.1, Chile, S:A701V and S:S247N/S:Y248- +BF.32 Alias of B.1.1.529.5.2.1.32, found mainly in USA, on C5284T branch, from #1250 +BF.33 Alias of B.1.1.529.5.2.1.33, Brazil/France, S:R346I, S:N460K +BF.34 Alias of B.1.1.529.5.2.1.34, found mainly in UK and Canada, from #1233 +BF.35 Alias of B.1.1.529.5.2.1.35, Japan/Malaysia, S:N450D, ORF1a:L730R +BF.36 Alias of B.1.1.529.5.2.1.36, ORF1a:S166G,ORF1b:S1273L,ORF1b:A1428V +BF.37 Alias of B.1.1.529.5.2.1.37, Japan, ORF1a:S944L, S:G446D, on C5284T branch +BF.38 Alias of B.1.1.529.5.2.1.38, Japan, C17304T +BF.38.1 Alias of B.1.1.529.5.2.1.38.1, Japan, S:Q1201K +BF.38.2 Alias of B.1.1.529.5.2.1.38.2, Japan, S:V445A +BF.38.3 Alias of B.1.1.529.5.2.1.38.3, Japan, S:P1162S +BF.39 Alias of B.1.1.529.5.2.1.39, S:G181V +BF.39.1 Alias of B.1.1.529.5.2.1.39.1, Chile/Peru, S:V445A, S:N450D +BF.40 Alias of B.1.1.529.5.2.1.40, S:V445A, on C5284T branch +BF.41 Alias of B.1.1.529.5.2.1.41, Brazil, ORF7b:A43V +BF.41.1 Alias of B.1.1.529.5.2.1.41.1, Brazil, S:R346T +BF.42 Alias of B.1.1.529.5.2.1.42, found in Japan, from #1855 +BA.5.2.2 Alias of B.1.1.529.5.2.2, France and Martinique lineage +BA.5.2.3 Alias of B.1.1.529.5.2.3, UK lineage +BZ.1 Alias of B.1.1.529.5.2.3.1, Denmark lineage, defined by S:Q677H +BZ.2 Alias of B.1.1.529.5.2.3.2, S:N450D, ORF1a:H2794Y +BA.5.2.4 Alias of B.1.1.529.5.2.4, Australia lineage +BA.5.2.5 Alias of B.1.1.529.5.2.5, Indonesia lineage +BA.5.2.6 Alias of B.1.1.529.5.2.6, global lineage, S:R346T, from #870 +CP.1 Alias of B.1.1.529.5.2.6.1, global lineage, 27360C +CP.1.1 Alias of B.1.1.529.5.2.6.1.1, Portugal, France, Denmark, UK lineage, S:V445A +CP.1.2 Alias of B.1.1.529.5.2.6.1.2, England, S:K150N +CP.1.3 Alias of B.1.1.529.5.2.6.1.3, England, S:G446S +CP.2 Alias of B.1.1.529.5.2.6.2, Bangladesh, S:N334K +CP.3 Alias of B.1.1.529.5.2.6.3, Turkey, S:N460Y +CP.4 Alias of B.1.1.529.5.2.6.4, Turkey, S:I770V +CP.5 Alias of B.1.1.529.5.2.6.5, South Africa, S:C1247F +CP.6 Alias of B.1.1.529.5.2.6.6, S:V1264L +CP.7 Alias of B.1.1.529.5.2.6.7 found mainly in Japan, from #1473 +CP.8 Alias of B.1.1.529.5.2.6.8 ORF1b:D1939G, C15240T, A15486G, C28651T, from #1627 +CP.8.1 Alias of B.1.1.529.5.2.6.8.1 found mainly in the Australia and Japan, from #1627 +BA.5.2.7 Alias of B.1.1.529.5.2.7, global lineage, from #924 +CY.1 Alias of B.1.1.529.5.2.7.1, found mainly in Belgium, Netherlands and Luxembourg, from #1247 +CY.2 Alias of B.1.1.529.5.2.7.2 found in Japan, from #1474 +BA.5.2.8 Alias of B.1.1.529.5.2.8, Israel lineage +BA.5.2.9 Alias of B.1.1.529.5.2.9, USA lineage +BA.5.2.10 Alias of B.1.1.529.5.2.10, Brazil lineage +BA.5.2.11 Alias of B.1.1.529.5.2.11, Philippines lineage +BA.5.2.12 Alias of B.1.1.529.5.2.12, Japan lineage +BA.5.2.13 Alias of B.1.1.529.5.2.13, mainly found in England, from #959 +BA.5.2.14 Alias of B.1.1.529.5.2.14, mainly found in Denmark, Canada and Pakistan, from #1002 +BA.5.2.16 Alias of B.1.1.529.5.2.16, Indonesia lineage, defined by ORF1a:A3697V, indirectly, from #1065 +BU.1 Alias of B.1.1.529.5.2.16.1, defined by S:444M and S:460K, from #1065 +BU.2 Alias of B.1.1.529.5.2.16.2, USA lineage, S:V445A +BU.3 Alias of B.1.1.529.5.2.16.3, Guatemala, S:K147N, S:N450D +BA.5.2.18 Alias of B.1.1.529.5.2.18, mainly Scandinavia, defined by S:K444R on ORF1b:1050N branch, from #1025 +CR.1 Alias of B.1.1.529.5.2.18.1, global, S:R346T +CR.1.1 Alias of B.1.1.529.5.2.18.1.1, S:V62I +CR.1.2 Alias of B.1.1.529.5.2.18.1.2, Canada/Israel, S:V445A +CR.1.3 Alias of B.1.1.529.5.2.18.1.3, found mainly in Denmark and Japan, from #1355 +CR.2 Alias of B.1.1.529.5.2.18.2, England, S:Y145H +BA.5.2.19 Alias of B.1.1.529.5.2.19, mainly Scandinavia, defined by ORF3a:T14I on ORF1b:1050N branch, from #916 +BA.5.2.20 Alias of B.1.1.529.5.2.20, mainly Indonesia, defined by C23707T on ORF1b:1050N branch to reduce unspecified BA.5.2 +BV.1 Alias of B.1.1.529.5.2.20.1, mainly found in Denmark, formerly BA.5.2.17, from #1019 +BV.2 Alias of B.1.1.529.5.2.20.2, defined by S:K444N, from #1122 +BA.5.2.21 Alias of B.1.1.529.5.2.21, mainly Indonesia, defined by C5284T on ORF1b:1050N branch to reduce unspecified BA.5.2 +CN.1 Alias of B.1.1.529.5.2.21.1, S:N450D, from #1108 +CN.2 Alias of B.1.1.529.5.2.21.2, S:R346T, S:Y28H, USA/Canada, from #1404 +BA.5.2.22 Alias of B.1.1.529.5.2.22, mainly found in USA, Canada and Germany, from #945 +BA.5.2.23 Alias of B.1.1.529.5.2.23, S:S255F, S:V445A, A4576T, T4579A, mainly found in USA, from #1090 +BA.5.2.24 Alias of B.1.1.529.5.2.24, defined by S:K444N on ORF1b:1050N branch +CK.1 Alias of B.1.1.529.5.2.24.1, Pakistan, defined by S:N460K, from #1120 +CK.1.1 Alias of B.1.1.529.5.2.24.1.1, found mainly in Japan, from #1452 +CK.1.1.1 Alias of B.1.1.529.5.2.24.1.1.1, S:E654K, G6742T, C8782T, Japan +CK.1.1.2 Alias of B.1.1.529.5.2.24.1.1.2, S:V1264L, Japan, from #2271 +CK.1.2 Alias of B.1.1.529.5.2.24.1.2, Pakistan, S:G181V, S:R346T, from #1467 +CK.1.3 Alias of B.1.1.529.5.2.24.1.3, Mexico, S:F157L, S:G181V +CK.1.4 Alias of B.1.1.529.5.2.24.1.4, C10228T, C25824T, C27741T, on C25614T branch +CK.1.5 Alias of B.1.1.529.5.2.24.1.5, C9118T, C15951T, ORF1a:M3733V, on C25614T branch +CK.2 Alias of B.1.1.529.5.2.24.2, Pakistan, defined by E:V62F, from #1190 +CK.2.1 Alias of B.1.1.529.5.2.24.2.1, Pakistan, defined by S:N460K, from #1125 +CK.2.1.1 Alias of B.1.1.529.5.2.24.2.1.1, defined by S:S255F, from #1190 +CK.3 Alias of B.1.1.529.5.2.24.3, found mainly in Singapore and USA, from #1121 +DG.1 Alias of B.1.1.529.5.2.24.2.1.1.1, defined by S:G252S, from #1288 +BA.5.2.25 Alias of B.1.1.529.5.2.25, mainly found in France, USA and Canada, from #1111 +DB.1 Alias of B.1.1.529.5.2.25.1, France/Netherlands/Spain, S:R346T, S:N460K, from #1258 +DB.2 Alias of B.1.1.529.5.2.25.2, BeNeLux, S:A262S +DB.3 Alias of B.1.1.529.5.2.25.3 found mainly in Europe, from #1613 +BA.5.2.26 Alias of B.1.1.529.5.2.26, most common in Thailand, defined by ORF3a:L108V, from #1133 +BA.5.2.27 Alias of B.1.1.529.5.2.27, most common in Vietnam, defined by ORF1a:I2332V, from #1133 +CF.1 Alias of B.1.1.529.5.2.27.1, USA and Mexico lineage, defined by S:K97T, originally designated as BA.5.2.15, from #1054 +CG.1 Alias of B.1.1.529.5.2.26.1, mainly found in Germany, Poland and Denmark, from #1126 +BA.5.2.28 Alias of B.1.1.529.5.2.28, most common in Malaysia, defined by ORF1a:T1437I, from #1133 +BA.5.2.29 Alias of B.1.1.529.5.2.29, mainly found in Denmark, from #1050 +BA.5.2.30 Alias of B.1.1.529.5.2.30, Europe lineage, defined by S:G446D +BA.5.2.31 Alias of B.1.1.529.5.2.31, USA lineage, defined by S:L84I +CD.1 Alias of B.1.1.529.5.2.31.1, USA lineage, defined by S:G446D, S:A688T +CD.2 Alias of B.1.1.529.5.2.31.2, USA lineage, defined by S:A435S +BA.5.2.32 Alias of B.1.1.529.5.2.32, Russia lineage, defined by S:N450D after ORF8:T87I +BA.5.2.33 Alias of B.1.1.529.5.2.33, UK lineage, defined by ORF8:P93S +CE.1 Alias of B.1.1.529.5.2.33.1, UK lineage, defined by S:R346I +BA.5.2.34 Alias of B.1.1.529.5.2.34, mainly found in Israel and USA, from #992 +BA.5.2.35 Alias of B.1.1.529.5.2.35, Pakistan lineage, defined by S:R346T after G28423C and C7006T +BA.5.2.36 Alias of B.1.1.529.5.2.36, India/Pakistan lineage, defined by S:K444T, from #1203 +CT.1 Alias of B.1.1.529.5.2.36.1, India/Pakistan lineage, defined by S:K356T, from #1203 +BA.5.2.37 Alias of B.1.1.529.5.2.37, found mainly in USA and India, from #1117 +BA.5.2.38 Alias of B.1.1.529.5.2.38, S:T430I, from #1254 +DA.1 Alias of B.1.1.529.5.2.38.1, Indonesia, S:R346T, from #1254 +BA.5.2.39 Alias of B.1.1.529.5.2.39, USA, S:R346T, from #1279 +BA.5.2.40 Alias of B.1.1.529.5.2.40, Sweden, S:N450D +BA.5.2.41 Alias of B.1.1.529.5.2.41, found mainly in Sweden, from #1328 +BA.5.2.42 Alias of B.1.1.529.5.2.42, found mainly in Australia, from #1266 +BA.5.2.43 Alias of B.1.1.529.5.2.43, found mainly in SouthKorea, from #1312 +BA.5.2.44 Alias of B.1.1.529.5.2.44, Indonesia/Malaysia/SouthKorea/global, ORF1a:L2564F +BA.5.2.45 Alias of B.1.1.529.5.2.45, found mainly in Australia, from #1383 +BA.5.2.46 Alias of B.1.1.529.5.2.46 found mainly in Japan, from #1446 +BA.5.2.47 Alias of B.1.1.529.5.2.47 found mainly in Indonesia, Australia, and USA, from #1496 +DQ.1 Alias of B.1.1.529.5.2.47.1 found mainly in Indonesia, Germany, and USA, from #1496 +BA.5.2.48 Alias of B.1.1.529.5.2.48, China, C2710T, C8626T, T17208C, from #1471 +DY.1 Alias of B.1.1.529.5.2.48.1, China, S:A570S, from #1479 +DY.1.1 Alias of B.1.1.529.5.2.48.1.1 found mainly in China, from #1599 +DY.2 Alias of B.1.1.529.5.2.48.2, China, N:Q241K, from #1478 +DY.3 Alias of B.1.1.529.5.2.48.3, China, ORF1a:T1788M, from #1472 +DY.4 Alias of B.1.1.529.5.2.48.4, China, ORF1b:T2432I +BA.5.2.49 Alias of B.1.1.529.5.2.49, China, S:T883I, A14673G, T16456C, from #1480 +DZ.1 Alias of B.1.1.529.5.2.49.1, China, S:D1146Y +DZ.2 Alias of B.1.1.529.5.2.49.2, China, S:G75V +BA.5.2.50 Alias of B.1.1.529.5.2.50 China, ORF1a:S2488F after ORF1b:P1727L, from #1542 +BA.5.2.51 Alias of B.1.1.529.5.2.51 Russia/Estonia, S:K444R after ORF1b:P1727L +BA.5.2.52 Alias of B.1.1.529.5.2.52 S:N450D after ORF1a:D2060N +BA.5.2.53 Alias of B.1.1.529.5.2.53 USA, S:A653V after T17928C +BA.5.2.54 Alias of B.1.1.529.5.2.54 Guatemala, S:N450D after C11020T +BA.5.2.55 Alias of B.1.1.529.5.2.55 Japan, C5548A +BA.5.2.56 Alias of B.1.1.529.5.2.56 UK, S:K444M +BA.5.2.57 Alias of B.1.1.529.5.2.57 S:R346S +BA.5.2.58 Alias of B.1.1.529.5.2.58 S:R346S after C9565T, C11479T, C12085T +BA.5.2.59 Alias of B.1.1.529.5.2.59 USA, S:V1264L +BA.5.2.60 Alias of B.1.1.529.5.2.60 Europe, S:N450D, ORF1a:K3832R after ORF1b:P1727L +BA.5.2.61 Alias of B.1.1.529.5.2.61 S:N450D, ORF1b:Q2070L +BA.5.2.62 Alias of B.1.1.529.5.2.62 S:A653V on BA.5.2 polytomy +BA.5.2.63 Alias of B.1.1.529.5.2.63 found mainly in Canada, from #1636 +BA.5.3 Alias of B.1.1.529.5.3, mainly found in Germany and South Africa, from #550 +BA.5.3.1 Alias of B.1.1.529.5.3.1, mainly found in South Africa, Austria, and England, from #625 +BE.1 Alias of B.1.1.529.5.3.1.1, mainly found in South Africa, Austria and England, from #625 +BE.1.1 Alias of B.1.1.529.5.3.1.1.1, Germany lineage +BE.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1, found globally, from #931 +BQ.1 Alias of B.1.1.529.5.3.1.1.1.1.1, Nigeria lineage, from #993 +BQ.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1, found globally, defining mutations ORF1b:N1191S and S:R346T, from #993 +BQ.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.1, Europe, ORF1b:V1639A +CZ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.1.1, England/SouthKorea/Romania, S:F490I +CZ.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.1.2, S:A688V +BQ.1.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.2, England, S:D253G, from #1209 +DU.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.2.1 found mainly in UK, from #1540 +BQ.1.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.3, England, A15111G +DR.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.1, S:M153I, found mainly in USA, from #1420 +DR.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.2, S:478R, USA +BQ.1.1.4 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4, T29173C +EE.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.1, USA, N:T366I +EE.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.2, ORF1b:V1538I +EE.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.3, Canada/USA, C22498T +EE.4 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.4, Europe, S:Q52H +EE.5 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4.5, USA, S:N185Y +BQ.1.1.5 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5, ORF1b:P2313L, ORF1a:V3855I +DN.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1, S:K147N +DN.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1 found mainly in UK and Denmark, from #1463 +DN.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.1 UK, S:Y453F, from #1548 +DN.1.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.2 UK, S:P479L +DN.1.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.3 S:S704L, UK +DN.1.1.4 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.1.1.4 S:N481S, UK +DN.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.2, ORF1b:D2351N, USA +DN.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.3, ORF1a:V1025L +DN.3.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.5.3.1, S:K182E +BQ.1.1.6 Alias of B.1.1.529.5.3.1.1.1.1.1.1.6, ORF1a:L681F +BQ.1.1.7 Alias of B.1.1.529.5.3.1.1.1.1.1.1.7, ORF1a:S216Y +DK.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.7.1, S:339N, ORF1a:A1809T +BQ.1.1.8 Alias of B.1.1.529.5.3.1.1.1.1.1.1.8, ORF1a:H374Y, ORF1a:L969F +DP.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.8.1, S:A352S, England/Belgium +BQ.1.1.9 Alias of B.1.1.529.5.3.1.1.1.1.1.1.9, S:S151I +BQ.1.1.10 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10, S:Y144-, T16413C, Denmark/Germany +FA.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.1, S:K478R, USA +FA.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.10.2, S:T323I, Denmark +BQ.1.1.11 Alias of B.1.1.529.5.3.1.1.1.1.1.1.11, S:S494P +BQ.1.1.12 Alias of B.1.1.529.5.3.1.1.1.1.1.1.12, France/USA, S:S494P, on ORF1a:T4368I branch +BQ.1.1.13 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13, Denmark/Israel/Switzerland/France, E:V62F and S:Y144- +EF.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1, C6040T +EF.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1, C23086T,T7783C +EF.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1.1, Brazil, S:F157L +EY.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.1.1.1, Brazil/USA, S:Q613H +EF.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.2, Spain, T15492C +EF.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.1.3, N:T166I +EF.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.2, UK, ORF1b:V119I +EF.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.13.2, Japan, S:S704T +BQ.1.1.14 Alias of B.1.1.529.5.3.1.1.1.1.1.1.14, England, G23608T +CW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.14.1, England, S:G446S +BQ.1.1.15 Alias of B.1.1.529.5.3.1.1.1.1.1.1.15, Spain, T18897C +DM.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.15.1, Spain/Europe/USA, S:A348S +BQ.1.1.16 Alias of B.1.1.529.5.3.1.1.1.1.1.1.16, England, S:Q607H +BQ.1.1.17 Alias of B.1.1.529.5.3.1.1.1.1.1.1.17, France, ORF1a:S2273F +BQ.1.1.18 Alias of B.1.1.529.5.3.1.1.1.1.1.1.18, France, C6541T +ED.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.1, Japan, ORF3a:L108F, ORF1a:C433S +ED.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.2, USA, ORF1a:D928Y +ED.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.18.3, USA, S:D843N +BQ.1.1.19 Alias of B.1.1.529.5.3.1.1.1.1.1.1.19, England, N:Q380H +BQ.1.1.20 Alias of B.1.1.529.5.3.1.1.1.1.1.1.20, Denmark, S:144- and ORF3a:H204Y +BQ.1.1.21 Alias of B.1.1.529.5.3.1.1.1.1.1.1.21, Switzerland/France, S:144- and A17946G +BQ.1.1.22 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22, Australia/England/Denmark, S:144- and C913A +ER.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1 found mainly in UK, from #1492 +ER.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1.1 found mainly in UK, from #1715 +BQ.1.1.23 Alias of B.1.1.529.5.3.1.1.1.1.1.1.23, France, ORF3a:V97I, S:Y144-, on G6421T branch +BQ.1.1.24 Alias of B.1.1.529.5.3.1.1.1.1.1.1.24, England, 11941T, S:Y144- +BQ.1.1.25 Alias of B.1.1.529.5.3.1.1.1.1.1.1.25, USA/Canada, S:F490S and S:Y144-, from #1350 +BQ.1.1.26 Alias of B.1.1.529.5.3.1.1.1.1.1.1.26, S:E471Q +BQ.1.1.27 Alias of B.1.1.529.5.3.1.1.1.1.1.1.27, France/USA, S:G181R, ORF1a:F2864L, on G6421T branch +BQ.1.1.28 Alias of B.1.1.529.5.3.1.1.1.1.1.1.28, S:P251L, ORF1b:P976S, on C18828T branch +EH.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.28.1, Europe, S:S247N, S:Y248S, from #1648 +BQ.1.1.29 Alias of B.1.1.529.5.3.1.1.1.1.1.1.29, S:Q613H +BQ.1.1.30 Alias of B.1.1.529.5.3.1.1.1.1.1.1.30, Canada, S:V445A +BQ.1.1.31 Alias of B.1.1.529.5.3.1.1.1.1.1.1.31, Indonesia/global, S:S256L +BQ.1.1.32 Alias of B.1.1.529.5.3.1.1.1.1.1.1.32 found mainly in USA, S:153I, S:144-, from #1402 +DT.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.1 England, S:F494P, from #1484 +DT.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.2 found mainly in USA, from #1612 +DT.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.3 USA, S:L176F +BQ.1.1.34 Alias of B.1.1.529.5.3.1.1.1.1.1.1.34, England, S:144-, S:494P, from #1483 +BQ.1.1.35 Alias of B.1.1.529.5.3.1.1.1.1.1.1.35, Canada, S:K147E, ORF1a:A1812T +ET.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.35.1 found mainly in UK and Belgium, from #1732 +BQ.1.1.36 Alias of B.1.1.529.5.3.1.1.1.1.1.1.36, Brazil, S:T883I +BQ.1.1.37 Alias of B.1.1.529.5.3.1.1.1.1.1.1.37 Italy, ins_S:247:SAE, S:Y248D, from #1571 +BQ.1.1.38 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38 found mainly in South Africa and USA, from #1419 +EW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R, T4579A, from #1786 +EW.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.2 S:A701V +EW.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.3 S:A348S, South Africa +BQ.1.1.39 Alias of B.1.1.529.5.3.1.1.1.1.1.1.39 found mainly in England, Singapore and Canada, from #1385 +FQ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.39.1, found mainly in Sweden, France and Australia, from #1797 +BQ.1.1.40 Alias of B.1.1.529.5.3.1.1.1.1.1.1.40 Canada, defined by N:T24I +BQ.1.1.41 Alias of B.1.1.529.5.3.1.1.1.1.1.1.41 USA, defined by S:K182I, from #1291 +BQ.1.1.42 Alias of B.1.1.529.5.3.1.1.1.1.1.1.42 France, defined by S:S704L +BQ.1.1.43 Alias of B.1.1.529.5.3.1.1.1.1.1.1.43 USA, S:Q613H (G23401C), C26292T +EZ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.43.1 Portugal, S:S247N, S:Y248S, from #1673 +BQ.1.1.44 Alias of B.1.1.529.5.3.1.1.1.1.1.1.44 S:D253G +BQ.1.1.45 Alias of B.1.1.529.5.3.1.1.1.1.1.1.45 Europe, S:Y248D, from #1512 +BQ.1.1.46 Alias of B.1.1.529.5.3.1.1.1.1.1.1.46 France, S:F157L +EN.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.46.1 France, S:V1264L, from #1696 +EN.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.46.1.1 S:M153I, France +BQ.1.1.47 Alias of B.1.1.529.5.3.1.1.1.1.1.1.47 S:K147I +BQ.1.1.48 Alias of B.1.1.529.5.3.1.1.1.1.1.1.48 S:H245N +BQ.1.1.49 Alias of B.1.1.529.5.3.1.1.1.1.1.1.49 S:H1083D +BQ.1.1.50 Alias of B.1.1.529.5.3.1.1.1.1.1.1.50 found mainly in Peru, from #1577 +BQ.1.1.51 Alias of B.1.1.529.5.3.1.1.1.1.1.1.51 USA, ORF3a:L101F +BQ.1.1.52 Alias of B.1.1.529.5.3.1.1.1.1.1.1.52 USA/Mexico, C7006T +EA.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.52.1 ORF8:C102F/ins_S:247:SKWL, from #1635 +EA.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.52.2 S:T470I +BQ.1.1.53 Alias of B.1.1.529.5.3.1.1.1.1.1.1.53 S:N185D +FM.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.53.1 S:613H, England +FM.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.53.2 S:946R, Germany +BQ.1.1.54 Alias of B.1.1.529.5.3.1.1.1.1.1.1.54 USA, S:F186S, N:A211T +BQ.1.1.55 Alias of B.1.1.529.5.3.1.1.1.1.1.1.55 USA, S:K1149R +BQ.1.1.56 Alias of B.1.1.529.5.3.1.1.1.1.1.1.56 S:H1101Y +BQ.1.1.57 Alias of B.1.1.529.5.3.1.1.1.1.1.1.57 S:S256A +BQ.1.1.58 Alias of B.1.1.529.5.3.1.1.1.1.1.1.58 USA/England, S:I934V +BQ.1.1.59 Alias of B.1.1.529.5.3.1.1.1.1.1.1.59 France, S:T732I +BQ.1.1.60 Alias of B.1.1.529.5.3.1.1.1.1.1.1.60 Brazil, S:S691F, from #1426 +BQ.1.1.61 Alias of B.1.1.529.5.3.1.1.1.1.1.1.61 USA, S:P621H +BQ.1.1.62 Alias of B.1.1.529.5.3.1.1.1.1.1.1.62 France, S:P621S +BQ.1.1.63 Alias of B.1.1.529.5.3.1.1.1.1.1.1.63 USA, S:Y248H +BQ.1.1.64 Alias of B.1.1.529.5.3.1.1.1.1.1.1.64 South Africa, S:F186S +BQ.1.1.65 Alias of B.1.1.529.5.3.1.1.1.1.1.1.65 Mexico, S:K147I, N:T135I +ES.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.65.1 found mainly in Canada and USA, from #1722 +BQ.1.1.66 Alias of B.1.1.529.5.3.1.1.1.1.1.1.66 England/France, S:K147N +BQ.1.1.67 Alias of B.1.1.529.5.3.1.1.1.1.1.1.67 S:L176F +BQ.1.1.68 Alias of B.1.1.529.5.3.1.1.1.1.1.1.68 USA, ORF1a:V1211I +BQ.1.1.69 Alias of B.1.1.529.5.3.1.1.1.1.1.1.69 ORF1b:S2027L +BQ.1.1.70 Alias of B.1.1.529.5.3.1.1.1.1.1.1.70 Japan, ORF1a:A903V, M:S212G, from #1445 +BQ.1.1.71 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71 found in England, from #1713 +EV.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71.1 S:Y248H, England +BQ.1.1.72 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72 ORF1b:D100A +FC.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72.1 S:478R, Indonesia +BQ.1.1.73 Alias of B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from #1740 +BQ.1.1.74 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74, S:182E, found mainly in Botswana and UK, from #1817 +FN.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74.1, S:478R, Botswana/England, from #1817 +BQ.1.1.75 Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L (T22928C), Reunion +BQ.1.1.76 Alias of B.1.1.529.5.3.1.1.1.1.1.1.76, C15180T, Slovenia/Austria +BQ.1.1.77 Alias of B.1.1.529.5.3.1.1.1.1.1.1.77, C12853T, ORF1b:A1428V, USA/France +BQ.1.1.78 Alias of B.1.1.529.5.3.1.1.1.1.1.1.78, ORF1a:M315I, ORF1b:P1953L, Japan +BQ.1.1.79 Alias of B.1.1.529.5.3.1.1.1.1.1.1.79, S:Q613H, C1594T, C16362T, T24079C, Greece +BQ.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from #1082 +BQ.1.2.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1, found mainly in Japan, SouthKorea and Mongolia, from #1392 +FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan, from #1714 +FB.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.2 S:478R, USA/South Korea/Mongolia +BQ.1.2.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, S:K147E, S:R346T, S:V445A, West Africa, from #1861 +JH.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.1, S:K182E, S:486A, S:S494P, S:E554K, from #2068 +JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068, from #2068, from #2068, from #2068 +BQ.1.2.3 Alias of B.1.1.529.5.3.1.1.1.1.1.2.3, E:V24L, Canada +BQ.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from #1082 +BQ.1.3.1 Alias of B.1.1.529.5.3.1.1.1.1.1.3.1, C2509T, Spain +BQ.1.3.2 Alias of B.1.1.529.5.3.1.1.1.1.1.3.2, ORF1a:L1853F, USA +BQ.1.4 Alias of B.1.1.529.5.3.1.1.1.1.1.4, England and Denmark, defined by S:R190T +BQ.1.5 Alias of B.1.1.529.5.3.1.1.1.1.1.5, defined by ORF1b:T1076I +BQ.1.6 Alias of B.1.1.529.5.3.1.1.1.1.1.6, USA lineage, defined by ORF1a:G94C +BQ.1.7 Alias of B.1.1.529.5.3.1.1.1.1.1.7, defined by S:L54F +BQ.1.8 Alias of B.1.1.529.5.3.1.1.1.1.1.8, defined by ORF1a:S505F and S:Y144-, from #1202 +BQ.1.8.1 Alias of B.1.1.529.5.3.1.1.1.1.1.8.1, England/Australia, S:256L +BQ.1.8.2 Alias of B.1.1.529.5.3.1.1.1.1.1.8.2, England/Scotland, S:A688V +FF.1 Alias of B.1.1.529.5.3.1.1.1.1.1.8.2.1 found mainly in the UK, from #1523 +BQ.1.9 Alias of B.1.1.529.5.3.1.1.1.1.1.9, USA lineage, defined by ORF1a:V2604I followed by S:346T (independent from BQ.1.1) +BQ.1.10 Alias of B.1.1.529.5.3.1.1.1.1.1.10, international lineage, 27600T +BQ.1.10.1 Alias of B.1.1.529.5.3.1.1.1.1.1.10.1, Italy/England/Denmark, S:H146L, from #1189 +EC.1 Alias of B.1.1.529.5.3.1.1.1.1.1.10.1.1, England, S:Q613H +EC.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.10.1.1.1, England, S:V445A +BQ.1.10.2 Alias of B.1.1.529.5.3.1.1.1.1.1.10.2, S:T523N +BQ.1.10.3 Alias of B.1.1.529.5.3.1.1.1.1.1.10.3, S:K147E +BQ.1.11 Alias of B.1.1.529.5.3.1.1.1.1.1.11, international lineage, 29541T +BQ.1.11.1 Alias of B.1.1.529.5.3.1.1.1.1.1.11.1 found mainly in USA and Peru, from #1581 +BQ.1.12 Alias of B.1.1.529.5.3.1.1.1.1.1.12, international lineage, 28849T +BQ.1.13 Alias of B.1.1.529.5.3.1.1.1.1.1.13, international lineage, ORF1a:V627I +BQ.1.13.1 Alias of B.1.1.529.5.3.1.1.1.1.1.13.1 found mainly in USA and Europe, from #1400 +BQ.1.14 Alias of B.1.1.529.5.3.1.1.1.1.1.14, international lineage, 18570A +BQ.1.15 Alias of B.1.1.529.5.3.1.1.1.1.1.15, international lineage, ORF1a:L3116F +BQ.1.15.1 Alias of B.1.1.529.5.3.1.1.1.1.1.15.1, Canada, ins_S:247:SKWL, C17745T +BQ.1.15.2 Alias of B.1.1.529.5.3.1.1.1.1.1.15.2, Canada, ins_S:247:SKWL, C6286T +BQ.1.16 Alias of B.1.1.529.5.3.1.1.1.1.1.16, international lineage, ORF1a:A540V +BQ.1.17 Alias of B.1.1.529.5.3.1.1.1.1.1.17, Denmark/Germany, S:K444T mutated further to S:444M +BQ.1.18 Alias of B.1.1.529.5.3.1.1.1.1.1.18, Denmark/Austria, E:P71S, then S:R346T and S:Y144- +BQ.1.19 Alias of B.1.1.529.5.3.1.1.1.1.1.19, S:S494P +BQ.1.20 Alias of B.1.1.529.5.3.1.1.1.1.1.20, S:A348S +BQ.1.21 Alias of B.1.1.529.5.3.1.1.1.1.1.21, England/France, S:R346S, S:Y144- +BQ.1.22 Alias of B.1.1.529.5.3.1.1.1.1.1.22, Canada, S:R346T after C26681T +BQ.1.23 Alias of B.1.1.529.5.3.1.1.1.1.1.23, Singapore/Indonesia/Australia, A2653G and S:Y144- +BQ.1.24 Alias of B.1.1.529.5.3.1.1.1.1.1.24, South Africa, S:T240I, S:R346T, from #1240 +BQ.1.25 Alias of B.1.1.529.5.3.1.1.1.1.1.25, S:R346T, T8038C, T25569C, G26031A +BQ.1.25.1 Alias of B.1.1.529.5.3.1.1.1.1.1.25.1, found mainly in USA, from #1451 +BQ.1.26 Alias of B.1.1.529.5.3.1.1.1.1.1.26, found mainly in Denmark, from #1315 +BQ.1.26.1 Alias of B.1.1.529.5.3.1.1.1.1.1.26.1, found mainly in Denmark, from #1369 +BQ.1.26.2 Alias of B.1.1.529.5.3.1.1.1.1.1.26.2, Europe, S:F157L +BQ.1.27 Alias of B.1.1.529.5.3.1.1.1.1.1.27, USA/England, S:V445A +BQ.1.28 Alias of B.1.1.529.5.3.1.1.1.1.1.28, found mainly in USA, ins:S:247SWRM, from #1415 +BQ.1.29 Alias of B.1.1.529.5.3.1.1.1.1.1.29, found mainly in USA, S:E554Q +BQ.1.30 Alias of B.1.1.529.5.3.1.1.1.1.1.30, Canada, S:V445A after T8038C, T25569C, G26031A +BQ.1.31 Alias of B.1.1.529.5.3.1.1.1.1.1.31, France, S:K147E +BQ.1.32 Alias of B.1.1.529.5.3.1.1.1.1.1.32 found mainly in USA and Mexico, from #1731 +BQ.1.33 Alias of B.1.1.529.5.3.1.1.1.1.1.33 S:F157L, S:K147I +BQ.2 Alias of B.1.1.529.5.3.1.1.1.1.2, international, S:A522P +BE.1.2 Alias of B.1.1.529.5.3.1.1.2, mainly found in Costa Rica and USA, from #923 +BE.1.1.2 Alias of B.1.1.529.5.3.1.1.1.2, Germany lineage, defined by ORF9b:S50L +CC.1 Alias of B.1.1.529.5.3.1.1.1.2.1, Germany lineage, defined by S:N450D +BE.1.2.1 Alias of B.1.1.529.5.3.1.1.2.1, Panama, Canada, USA, defined by S:V445A, from #1095 +DW.1 Alias of B.1.1.529.5.3.1.1.2.1.1 found mainly in Costa Rica, from #1564 +BE.1.3 Alias of B.1.1.529.5.3.1.1.3, Finland and Estonia lineage +BE.1.4 Alias of B.1.1.529.5.3.1.1.4, America lineage, ORF1b:V1787I +BE.1.4.1 Alias of B.1.1.529.5.3.1.1.4.1, S:A701V +BE.1.4.2 Alias of B.1.1.529.5.3.1.1.4.2, S:R346T +BE.1.4.3 Alias of B.1.1.529.5.3.1.1.4.3, Mexico, S:V445A +BE.1.4.4 Alias of B.1.1.529.5.3.1.1.4.4, S:L176F +BE.2 Alias of B.1.1.529.5.3.1.2, Belgium lineage +BE.3 Alias of B.1.1.529.5.3.1.3, USA lineage, from #723 +BE.4 Alias of B.1.1.529.5.3.1.4, Bangladesh, defined by ORF1a:T3308N, from #1115 +BE.4.1 Alias of B.1.1.529.5.3.1.4.1, Bangladesh, defined by S:P209L, S:R346T, from #1115 +BE.4.1.1 Alias of B.1.1.529.5.3.1.4.1.1, Bangladesh, defined by S:K444R, from #1115 +CQ.1 Alias of B.1.1.529.5.3.1.4.1.1.1, Bangladesh, defined by S:Y144- and 11866T +CQ.1.1 Alias of B.1.1.529.5.3.1.4.1.1.1.1, Canada/England, S:A262S +CQ.2 Alias of B.1.1.529.5.3.1.4.1.1.2, Japan/USA, defined by S:V445A, from #1232 +BE.4.2 Alias of B.1.1.529.5.3.1.4.2, Bangladesh, defined by S:K444N & S:N460K, from #1114 +BE.5 Alias of B.1.1.529.5.3.1.5, South Africa, S:R346T, from #1281 +BE.6 Alias of B.1.1.529.5.3.1.6, France, S:R346S, on 28693C, 22624C +BE.7 Alias of B.1.1.529.5.3.1.7, South Africa, S:R346T on 28693C, 22624C, from #1280 +BE.8 Alias of B.1.1.529.5.3.1.8, South Africa, S:R346T on 28693C, from #1278 +BE.9 Alias of B.1.1.529.5.3.1.9, S:144-, S:444T, S:460K, on 28693C, Brazil, from #1302 +BE.10 Alias of B.1.1.529.5.3.1.10, S:K444T, S:N460K, mainly Brazil, from #1411 +BE.11 Alias of B.1.1.529.5.3.1.11, T3049C, on 28693C +BE.12 Alias of B.1.1.529.5.3.1.12, C10834T, T18975C, A29359G, on 28693C +BE.13 Alias of B.1.1.529.5.3.1.13, S:346T, S:478R, on 28693C, South Africa +BA.5.3.2 Alias of B.1.1.529.5.3.2, mainly found in Germany, from #697 +BA.5.3.3 Alias of B.1.1.529.5.3.3, UK lineage +BA.5.3.4 Alias of B.1.1.529.5.3.4, Germany lineage +BA.5.3.5 Alias of B.1.1.529.5.3.5, mainly found in South Africa, from #1042 +BA.5.5 Alias of B.1.1.529.5.5, mainly found in USA, from #656 +BA.5.5.1 Alias of B.1.1.529.5.5.1, mainly found in USA, from #873 +BA.5.5.2 Alias of B.1.1.529.5.5.2, mainly found in USA, Canada, England and Ireland, from #938 +BA.5.5.3 Alias of B.1.1.529.5.5.3, USA lineage, from #1015 +BA.5.6 Alias of B.1.1.529.5.6, USA lineage, from #738 +BA.5.6.1 Alias of B.1.1.529.5.6.1, Peru lineage +BA.5.6.2 Alias of B.1.1.529.5.6.2, mainly found in USA, Belgium and Mexico, from #903 +BW.1 Alias of B.1.1.529.5.6.2.1, Mexico lineage, defined by S:460K, from #1059 +BW.1.1 Alias of B.1.1.529.5.6.2.1.1, Mexico lineage, defined by S:V486A, from #1341 +BW.1.1.1 Alias of B.1.1.529.5.6.2.1.1.1, Mexico, ORF1a:L864F +BW.1.1.2 Alias of B.1.1.529.5.6.2.1.1.2, Mexico, ORF1b:P1101S +BW.1.2 Alias of B.1.1.529.5.6.2.1.2, Mexico lineage, defined by S:R346S +BA.5.6.3 Alias of B.1.1.529.5.6.3, mainly found in England, from #1118 +BA.5.6.4 Alias of B.1.1.529.5.6.4, found in USA and Europe, from #1191 +BA.5.7 Alias of B.1.1.529.5.7, Australia lineage +BA.5.8 Alias of B.1.1.529.5.8, mainly found in England, USA, Denmark and Scotland, from #743 +BA.5.9 Alias of B.1.1.529.5.9, mainly found in Germany, Switzerland and Denmark, from #753 +BA.5.10 Alias of B.1.1.529.5.10, mainly found in Philippines, Canada, and USA, from #936 +BA.5.10.1 Alias of B.1.1.529.5.10.1, mainly from Philippines, defined by S:346T, from #1031 +DF.1 Alias of B.1.1.529.5.10.1.1, found mainly in UK, from #1270 +DF.1.1 Alias of B.1.1.529.5.10.1.1.1 found mainly in USA, from #1494 +BA.5.11 Alias of B.1.1.529.5.11, South Africa, C1627T, S:R346T, from #1277 +BA.5.12 Alias of B.1.1.529.5.12 found mainly in Switzerland, France and Germany, from #1640 +B.1.2 USA +B.1.3 USA lineage +B.1.6 Belgian lineage +B.1.8 Netherlands, South Africa, Denmark, USA +B.1.12 Luxembourg lineage (also England, Belgium etc.) +B.1.13 UK lineage +B.1.14 USA lineage (CA) +B.1.22 Netherlands lineage +B.1.22.1 Curacao +B.1.23 New Zealand / Australia +B.1.35 Wales lineage +B.1.36 Global many sublineages (see below) +B.1.36.1 European/Denmark +B.1.36.2 UK +B.1.36.7 UK (reassigned from Oman lineage) +B.1.36.8 Predominantly Indian lineage with global records (inc. Canada) +B.1.36.9 UK +B.1.36.10 Jordan/Saudi Arabia (single recent record from USA) +B.1.36.12 England +B.1.36.16 SE Asia +B.1.36.17 UK lineage +B.1.36.18 Canadian lineage +B.1.36.19 Oceana +B.1.36.20 Mainly Scotland +B.1.36.21 Norway lineage +B.1.36.22 Lineage with sequences majoritively from Finland +B.1.36.23 UK +B.1.36.24 England with Global records +B.1.36.25 Denmark +B.1.36.26 Canada/USA +B.1.36.28 UK +B.1.36.27 Hong Kong lineage, initially associated with travellers from Nepal. Epidemiologically and phylogenetically supported. +B.1.36.29 India +B.1.36.31 UK/Global +B.1.36.33 Denmark +B.1.36.34 UK +B.1.36.35 European/Switzerland +B.1.36.36 Canada +B.1.36.37 Canada +B.1.36.38 Canada/UK +B.1.36.39 UK +B.1.37 USA lineage +B.1.38 USA +B.1.39 Denmark +B.1.40 Scotland lineage +B.1.44 Wales lineage +B.1.67 Wales lineage +B.1.69 Scotland +B.1.70 Scotland +B.1.76 English Lineage +B.1.77 English lineage +B.1.78 Netherlands lineage +B.1.81 UK lineage +B.1.83 Belgian lineage +B.1.84 DRC lineage +B.1.91 Portuguese lineage +B.1.93 UK lineage +B.1.94 Luxembourg +B.1.96 Netherlands lineage +B.1.97 England +B.1.103 USA +B.1.104 England +B.1.105 England +B.1.106 USA +B.1.108 USA +B.1.110 Chilean/ USA and Australia lineage +B.1.110.1 Chilean/ USA lineage +B.1.110.2 UK lineage +B.1.110.3 USA lineage +B.1.111 South/ Central American lineage (mostly Trinidad and Colombia, an a small cluster from Norwich) +B.1.112 USA/UT +B.1.113 Indian lineage +B.1.115 Israel and UK +B.1.116 USA lineage +B.1.117 UK lineage +B.1.118 Danish +B.1.119 USA lineage +B.1.120 Wales lineage +B.1.124 USA/WA +B.1.126 USA (MN) lineage +B.1.127 Denmark +B.1.128 Canada, Switzerland and DRC +B.1.131 European lineage +B.1.134 USA lineage +B.1.137 USA lineage +B.1.139 USA lineage +B.1.140 South African lineage +B.1.142 Wales lineage +B.1.143 Indian lineage +B.1.145 Indian lineage +B.1.146 Swiss lineage +B.1.147 Canadian lineage +B.1.149 DRC lineage +B.1.151 UK lineage +B.1.153 English lineage with some Australian, New Zealand and European sequences +B.1.157 UK/ Spanish lineage +B.1.158 Finland lineage +B.1.159 French lineage +B.1.160 Large European lineage, sequences from BeNeLuX, Denmark, Switzerland, Hungary and UK. +B.1.160.7 English Lineage +B.1.160.8 Denmark +B.1.160.9 Switzerland +B.1.160.10 Switzerland +B.1.160.11 Switzerland +B.1.160.12 Switzerland +B.1.160.13 Netherlands lineage +B.1.160.14 Switzerland +B.1.160.15 Mostly Switzerland +B.1.160.16 Mostly Switzerland +AB.1 Alias of B.1.160.16.1, Denmark, grown out of big swiss cluster +B.1.160.17 Denmark +B.1.160.18 Mayotte +B.1.160.19 Switzerland +B.1.160.20 Switzerland +B.1.160.21 Luxembourg +B.1.160.22 Switzerland, Germany, Austria +B.1.160.23 England +B.1.160.24 Denmark +B.1.160.25 French Guiana +B.1.160.26 Mostly Switzerland, a little Europe +B.1.160.27 Mayotte +B.1.160.28 Belgium and Luxembourg +B.1.160.29 Switzerland +B.1.160.30 Switzerland +B.1.160.31 Switzerland +B.1.160.32 Switzerland +B.1.160.33 Was part of B.1.160.7 but this is now split on tree. English lineage last seen 2020-11-18 in uk, but long branch to a recent French sample sticking out +B.1.161 USA +B.1.162 USA lineage +B.1.163 USA +B.1.164 Eastern Europe +B.1.165 England +B.1.166 USA lineage +B.1.167 Canada, England +B.1.168 Scottish lineage +B.1.169 USA, some previously B.1.333.1 +B.1.170 Egypt UAE +B.1.173 England +B.1.177 Major mostly European lineage, result of opening borders summer 2020 +B.1.177.2 English lineage +B.1.177.3 Welsh and English lineage +B.1.177.4 UK lineage +B.1.177.5 UK, mostly Scotland +B.1.177.6 Wales lineage +B.1.177.7 Wales lineage +B.1.177.8 Wales lineage +B.1.177.9 UK lineage +B.1.177.10 England +B.1.177.11 Scotland mostly, some England +B.1.177.12 Danish +B.1.177.14 Danish/ Norway lineage +B.1.177.15 English Welsh lineage +AA.1 Alias of B.1.177.15.1, European Lineage +AA.2 Alias of B.1.177.15.2, Welsh Lineage +AA.3 Alias of B.1.177.15.3, Welsh Lineage +AA.4 Alias of B.1.177.15.4, Welsh Lineage +AA.5 Alias of B.1.177.15.5, Welsh Lineage +AA.6 Alias of B.1.177.15.6, Welsh Lineage +AA.7 Alias of B.1.177.15.7, Welsh Lineage +AA.8 Alias of B.1.177.15.8, Welsh Lineage +B.1.177.16 UK lineage +B.1.177.17 UK, merged with B.1.177.13 +B.1.177.18 England, some Wales, parent is mainland Europe +B.1.177.19 England, some Wales +B.1.177.20 England +B.1.177.21 Denmark +B.1.177.23 Swiss lineage +B.1.177.24 Danish lineage, contains some previous B.1.177.1 +B.1.177.25 Gibraltar lineage +B.1.177.26 UK lineage +B.1.177.27 Danish +B.1.177.28 Swiss lineage +B.1.177.29 Spain +B.1.177.30 England +B.1.177.31 Swiss lineage +B.1.177.32 Swiss and Portuguese mostly +B.1.177.33 Mostly italian, some swiss, some english +B.1.177.34 Dutch +B.1.177.35 Danish, some Israel more recently +B.1.177.36 Dutch +B.1.177.37 Belgian +B.1.177.38 Dutch +B.1.177.39 Ireland andNorthern Ireland +B.1.177.40 Dutch +B.1.177.41 Danish and swedish +B.1.177.42 Danish +B.1.177.43 Swiss, then into Germany and Austria +B.1.177.44 Swiss mostly +B.1.177.45 Iceland +B.1.177.46 Sweden and Denmark +B.1.177.47 England +B.1.177.48 UK lineage +B.1.177.49 Spanish lineage +B.1.177.50 Netherlands / Germany +Z.1 Alias of B.1.177.50.1, UK lineage +B.1.177.51 European lineage +B.1.177.52 European lineage +Y.1 Alias of B.1.177.52.1, Portuguese lineage +B.1.177.53 UK lineage +W.1 Alias of B.1.177.53.1, French and USA lineage +W.2 Alias of B.1.177.53.2, Dutch lineage +W.3 Alias of B.1.177.53.3, UK lineage +W.4 Alias of B.1.177.53.4, UK lineage +B.1.177.54 UK lineage +V.1 Alias of B.1.177.54.1, Northern Irish and Irish lineage +V.2 Alias of B.1.177.54.2, Northern Irish lineage +B.1.177.55 England and Ireland +B.1.177.56 UK lineage +B.1.177.57 UK lineage +B.1.177.58 UK +B.1.177.59 Ireland +B.1.177.60 Northern Europe, mostly Lithuania +U.1 Alias of B.1.177.60.1, England +U.2 Alias of B.1.177.60.2, Denmark +U.3 Alias of B.1.177.60.3, Norway and Latvia +B.1.177.61 Spain +B.1.177.62 Germany, Switzerland, Netherlands +B.1.177.63 Wales +B.1.177.64 Ireland +B.1.177.65 Wales +B.1.177.66 Irish lineage +B.1.177.67 Irish lineage +B.1.177.68 Irish lineage +B.1.177.69 UK lineage +B.1.177.70 Danish lineage +B.1.177.71 Swiss lineage +B.1.177.72 Portuguese lineage +B.1.177.73 Netherlands lineage +B.1.177.74 Netherlands, Spain, UK +B.1.177.75 Italian lineage +B.1.177.76 Danish +B.1.177.77 Benelux + Denmark +B.1.177.78 French lineage +B.1.177.80 Scandinavian lineage +B.1.177.81 Large European lineage +B.1.177.82 Scandinavian lineage +B.1.177.83 Italian lineage +B.1.177.84 UK lineage +B.1.177.85 Portuguese lineage +B.1.177.86 German and Danish lineage +B.1.177.87 UK lineage +B.1.177.88 Italian lineage, from #19 +B.1.177.89 Switzerland lineage +B.1.178 DRC lineage +B.1.179 Denmark +B.1.180 Romanian lineage +B.1.181 USA lineage +B.1.182 Spanish lineage +B.1.184 India +B.1.187 Polish lineage +B.1.188 USA (OR) lineage +B.1.189 USA/Mexico +B.1.190 Netherlands lineage +B.1.192 Equatorial Guinea +B.1.194 USA +B.1.195 UAE +B.1.198 UK lineage +B.1.199 USA +B.1.201 UK lineage +B.1.203 Panama/Costa Rica +B.1.206 USA +B.1.205 Peruvian +B.1.208 French lineage +B.1.210 Indian lineage +B.1.211 Belgium/ Luxembourg lineage +B.1.212 South American lineage +B.1.213 Polish lineage +B.1.214 DRC/ Congo lineage +B.1.214.1 Congo/ France lineage, from #21 +B.1.214.2 Lineage from Belgium with a number of key spike mutations and a 9bp spike insertion, from #20 +B.1.214.3 France, Belgium and Mayotte lineage, from #20 +B.1.214.4 Danish lineage, from #20 +B.1.215 Scottish lineage +B.1.218 Swiss lineage +B.1.219 Suriname lineage +B.1.220 European lineage +B.1.221 European lineage +B.1.221.1 UK lineage +B.1.221.2 German lineage +B.1.221.3 Danish lineage +B.1.221.4 Belgium/ Luxembourg lineage +B.1.222 Scottish lineage +B.1.223 UK lineage +B.1.224 Austrian lineage +B.1.225 UK lineage +B.1.227 Sweden +B.1.229 UK lineage +B.1.231 UK lineage +B.1.232 USA/ Scottish lineage +B.1.233 USA lineage +B.1.234 USA lineage +B.1.235 UK +B.1.236 Swiss lineage +B.1.237 South african lineage +B.1.238 UK lineage +B.1.239 USA lineage +B.1.240 USA +B.1.240.1 Curacao and Aruba +B.1.240.2 England +B.1.241 USA lineage +B.1.243 USA lineage +B.1.243.1 Emergent lineage in Arizona with a number of defining amino acid mutations, including S:E484K and S:V213G. Described in Skidmore et al 2021. https://www.medrxiv.org/content/10.1101/2021.03.26.21254367v1.full.pdf, from #35 +B.1.243.2 Mexico lineage, from #169 +B.1.242 Norway lineage +B.1.245 USA/CA +B.1.247 India +B.1.249 England +B.1.248 Scotland +B.1.250 England +B.1.251 England +B.1.252 Wales +B.1.254 Scotland +B.1.256 Scottish lineage +B.1.258 UK lineage +B.1.258.2 Irish lineage (has sub-lineage G.1) +G.1 Alias of B.1.258.2.1, UK lineage +B.1.258.3 UK lineage +B.1.258.4 UK lineage +B.1.258.5 UK lineage +B.1.258.6 UK lineage +B.1.258.7 UK lineage +B.1.258.9 Danish lineage +B.1.258.10 Scottish lineage +B.1.258.11 Danish lineage +B.1.258.12 UK lineage +B.1.258.14 Italian lineage +B.1.258.15 Danish lineage +B.1.258.16 Swiss/ Danish lineage +B.1.258.17 European lineage +B.1.258.18 Netherlands lineage +B.1.258.19 Danish lineage +B.1.258.20 Luxembourg lineage +B.1.258.21 Netherlands lineage +B.1.258.22 Swedish lineage +B.1.258.23 USA (UT) lineage +B.1.258.24 Italian lineage +B.1.260 Saudi Arabian lineage +B.1.263 Danish +B.1.264 USA (UT) +B.1.264.1 Russia, Germany, Switzerland, Austria. Was B.1.412 +B.1.265 USA lineage +B.1.267 USA (CA) +B.1.268 USA +B.1.270 Canadian lineage +B.1.273 French lineage +B.1.274 Utah lineage +B.1.276 USA lineage +B.1.277 European lineage +B.1.279 Canadian lineage +B.1.280 USA +B.1.281 Bahrain lineage +B.1.282 UK lineage +B.1.284 USA - Texas +B.1.285 USA - Texas +B.1.287 USA lineage +B.1.289 USA - Arizona +B.1.291 Costa Rica +B.1.292 Gambia +B.1.293 USA +B.1.294 USA - WI and MN +B.1.298 USA (north east) +B.1.301 USA , some B.1.2 merged in +B.1.302 USA, New England +B.1.304 USA +B.1.305 USA, mostly TX +B.1.306 USA lineage +B.1.308 Northern USA and Canada +B.1.309 USA lineage +B.1.310 Netherlands +B.1.311 USA lineage +B.1.313 USA (removed the polytomy at the base of the lineage) +B.1.314 North American lineage +B.1.315 USA lineage +B.1.316 Canada lineage +B.1.318 USA (FL) +B.1.319 USA and Australia +B.1.320 USA +B.1.321 Belgium, England +B.1.323 USA (NY) +B.1.324 USA +B.1.325 USA (TX) +B.1.326 USA (TX) +B.1.328 USA +B.1.329 German +B.1.330 USA (MN) +B.1.332 USA +B.1.333 USA lineage WA +B.1.334 USA lineage +B.1.335 USA lineage +B.1.336 USA lineage +B.1.337 USA lineage +B.1.338 Australia +B.1.340 USA lineage +B.1.341 USA lineage +B.1.342 Sweden +B.1.344 USA (CO) +B.1.346 USA lineage +B.1.348 USA lineage +B.1.349 USA lineage +B.1.350 Canada +B.1.350.1 England +B.1.351 Lineage of concern detected in South Africa +B.1.351.1 Sublineage of B.1.351 circulating in Botswana +B.1.351.2 Sublineage of B.1.351 circulating in Mayotte +B.1.351.3 Sublineage of B.1.351 predominantly in Bangladesh and Singapore with exports elsewhere, from #65 +B.1.351.5 Sublineage of B.1.351 in Spain, from #211 +B.1.343 Denmark +B.1.354 Denmark +B.1.355 USA lineage +B.1.356 European, mostly dutch and spanish, some north american +B.1.357 USA (OR,WA,HI) +B.1.358 Danish lineage +B.1.359 USA lineage +B.1.360 USA +B.1.361 USA lineage (split from whatever Chris reassigns B.1.361 to) +B.1.362 Israel lineage +B.1.362.1 UK lineage +B.1.362.2 UK lineage +B.1.363 USA lineage +B.1.366 USA lineage +B.1.367 European lineage (mostly France and England) +B.1.369 USA/ New Zealand lineage +B.1.369.1 Canada lineage +B.1.370 USA lineage, cleaned up a lot in release 2021-01-20 +B.1.371 Danish/ USA lineage, previously part of B.1.21 +B.1.372 Danish lineage +B.1.375 USA lineage (circulating in Connecticut with the 69-70del, which leads to SGTF. However, they express 484E and 501N in their spike proteins.) +B.1.377 USA and England +B.1.378 USA +B.1.379 UK +B.1.380 Rwanda / Uganda +B.1.381 South Africa +B.1.382 USA +B.1.383 Wales +B.1.384 USA lineage +B.1.385 USA +B.1.387 French lineage +B.1.388 Cote d'Ivoire lineage +B.1.389 England + Europe +B.1.390 USA +B.1.391 UK +B.1.393 Uganda +B.1.395 Wales +B.1.396 USA lineage +B.1.397 USA lineage +B.1.398 European lineage +B.1.399 USA +B.1.400 USA lineage +B.1.400.1 USA lineage, from #94 +B.1.401 USA lineage +B.1.402 USA lineage +B.1.403 USA lineage +B.1.404 USA lineage +B.1.405 USA lineage +B.1.406 Germany/ UK lineage +B.1.407 UK lineage +B.1.408 UK/ Romanian lineage +B.1.409 USA lineage +B.1.411 Sri Lankan lineage +B.1.413 USA +B.1.415 USA +B.1.415.1 Predominantly Mexico lineage, from #157 +B.1.416 Senegal/ Gambian lineage, reassigned from B.1.5.12 +B.1.416.1 European lineage within diversity of B.1.416. Previously assigned E.1 +B.1.417 South African lineage +B.1.418 Scottish lineage +B.1.420 Colombian lineage +B.1.421 USA lineage +B.1.422 Canada mostly +B.1.423 USA lineage +B.1.424 USA lineage +B.1.425 USA lineage +B.1.426 USA (UT) lineage +B.1.427 USA lineage (CA) +B.1.428 Danish lineage (amalgam of Danish sequences from B.1.358, B.1.288, B.1.262) +B.1.428.1 Iraq +B.1.428.2 Tunisia, England, France +B.1.428.3 UAE, Jordan +B.1.429 A lineage predominantly circulating in California but with exports to other countries. Characterised by the spike L452R mutation but also has spike:W152C orf1ab:D5584Y, and N:T205I, from #3 +B.1.429.1 Colorado lineage, from #37 +B.1.431 Scotland +B.1.432 USA lineage +B.1.433 USA lineage +B.1.434 Australian lineage (previously a couple part of B.1.25, B.1.295) +B.1.435 USA - UT +B.1.436 USA lineage reassigned from previous tree +B.1.437 USA - FL +B.1.438 Lineage circulating in multiple countries, from #48 +B.1.438.1 Canada lineage +B.1.438.2 Mayotte and Reunion lineage +B.1.438.3 USA lineage +B.1.438.4 USA lineage +B.1.439 USA +B.1.441 Global lineage (inc. merge of B.1.274) +B.1.442 USA +B.1.443 USA lineage +B.1.444 USA Utah lineage +B.1.445 USA (AZ) +B.1.446 USA, some B.1.333 +B.1.448 USA lineage +B.1.450 USA (TX) +B.1.451 USA lineage (VA), previously B.1.328 and B.1.317 +B.1.452 USA (CA) +B.1.453 USA (CA and TX) +B.1.456 SE Asian (reassigned) +B.1.458 India +B.1.459 Indonesia +B.1.460 UK lineage +B.1.462 UK/Nigeria +B.1.463 Finland +B.1.465 UK, contains B.1.466 which is reassigned (see below) +B.1.466 Global lineage containing two new sublineages (see below) +B.1.466.1 USA/UAE +B.1.466.2 Indonesia, from #30 +AU.1 Alias of B.1.466.2.1, predominantly Papua New Guinea with some Australia sequences +AU.2 Alias of B.1.466.2.2, Malaysia lineage +AU.3 Alias of B.1.466.2.3, predominantly Australia with some Papua New Guinea and Singapore sequences +B.1.467 Nigeria/Switzerland +B.1.468 Indonesia/Singapore. Seq names misassigned in original file +B.1.469 European (Turkey, Denmark, UK) +B.1.470 Indonesia/Singapore +B.1.471 UK with global representation +B.1.473 USA lineage +B.1.474 Denmark/ Luxembourg lineage +B.1.475 German lineage +B.1.476 West African lineage +B.1.478 USA lineage +B.1.479 USA lineage +B.1.480 England, Australia, Sweden, Norway +B.1.482 France/ West African lineage +B.1.483 USA lineage +B.1.485 USA lineage +B.1.486 USA (MA) +B.1.487 USA - TX +B.1.488 Denmark and Sweden +B.1.489 Wales and Norway +B.1.490 Finland. +B.1.491 England +B.1.492 USA - Colorado +B.1.493 USA (FL) +B.1.494 USA (Split from B.1.3) +B.1.495 USA (Split from B.1.3) +B.1.496 USA (could be dissolved - sequences jumped out, previously split from B.1.3) +B.1.497 South Korea (was B.1.3.1) +B.1.498 USA (Split from B.1.3) +B.1.499 Mostly Argentina, some Spain, NL, Hong Kong (was B.1.3.2) +B.1.499.1 USA lineage +B.1.500 USA (split from B.1.3) +B.1.501 USA (Split from B.1.3) +B.1.502 USA (Split from B.1.3) +B.1.503 USA (Split from B.1.3) +B.1.504 Israel and England (was B.1.3.3) +B.1.505 Israel and england (was B.1.3.4) +B.1.506 USA (NY, split from B.1.3) +B.1.507 USA (MI, NY, split from B.1.3) +B.1.508 USA (NY, AZ, split from B.1.3) +B.1.509 USA (split from B.1.3, mostly FL) +B.1.510 Iceland, Sweden, North America (could be dissolved) +B.1.511 USA lineage +B.1.513 Northern Europe +B.1.515 USA (Utah) +B.1.516 USA (AZ and NM) +B.1.517 USA (mostly AZ) +B.1.517.1 Australia +B.1.518 USA +B.1.520 USA, Canada, England, Germany etc. (could be dissolved / reassigned to B.1) +B.1.521 USA lineage +B.1.523 UK/Australia +B.1.524 Malaysian lineage +B.1.525 International lineage with E484K, del69-70 among other defining mutations, from #4 +B.1.526 A lineage predominantly circulating in New York but with a few exports to other countries. Characterised by spike mutations T95I and D253G, plus others. The most frequent spike mutation pattern is L5F T95I D253G E484K D614G A701V, with a smaller fraction having S477N instead of E484K. Spike mutation E484K is present in about half of this lineage (as of 2021-02-10) - Very possible not all new additions carry T95I and D253G (someone should check this, e.g. for USA/NY-Wadsworth-21008455-01/2021 and Aruba/AW-RIVM-11403/2021), from #6 +B.1.527 Czech Republic/ Ukraine lineage +B.1.528 Moroccan lineage +B.1.529 French lineage +B.1.530 Kenya +B.1.531 England +B.1.532 England +B.1.533 Saudi Arabia +B.1.534 Denmark +B.1.535 Australia +B.1.536 Denmark +B.1.537 India +B.1.538 India +B.1.539 USA +B.1.540 India +B.1.541 USA lineage +B.1.542 Spain +B.1.543 USA +B.1.544 Congo/ Cameroon/ USA lineage +B.1.545 New Zealand +B.1.546 USA +B.1.547 Canada +B.1.548 India +B.1.549 Kenya + England +B.1.550 USA lineage +B.1.551 USA lineage +B.1.552 North American +B.1.554 USA (UT) lineage +B.1.555 Sweden +B.1.556 USA lineage +B.1.557 Northern Ireland +B.1.558 USA/ Mexico lineage +B.1.559 Scotland +B.1.560 India +B.1.561 USA - contains previous B.1.404 +B.1.562 England base, to Ireland +B.1.563 UK lineage +B.1.564 USA lineage, split out from B.1.369 +B.1.564.1 Canada lineage +B.1.565 USA - contains previous B.1.139 +B.1.566 USA - Arizona and Texas +B.1.567 USA lineage, formally part of B.1.2 +B.1.568 USA lineage, split out from B.1.361 +B.1.569 USA (CA and TX) +B.1.570 USA (CO) +B.1.571 USA lineage, split out from B.1.369 +B.1.572 USA, split from B.1.325 +B.1.573 Canada (BC) +B.1.574 USA lineage, split out from B.1.363 +B.1.575 USA and Aruba lineage with spike mutations "S:P681H","S:S494P" and "S:T716I" +B.1.575.1 Spanish sub lineage of B.1.575 with spike mutations "S:P681H","S:S494P" and "S:T716I", from #64 +B.1.575.2 Spain lineage, from #116 +B.1.576 USA lineage, formally part of B.1.363 +B.1.577 USA lineage, formally part of B.1.2 +B.1.578 USA, formally part of B.1.313 +B.1.579 USA (AZ) formally part of B.1.516 +B.1.580 USA Southern (some B.1.361) +B.1.581 USA (TX) +B.1.582 USA (TX some B.1.361) +B.1.585 USA lineage +B.1.586 USA lineage (previously part of B.1.320 that jumped to a new part of the tree) +B.1.587 USA (OR) lineage +B.1.588 USA (NY/PR) lineage +B.1.588.1 Romanian lineage +B.1.589 USA lineage +B.1.590 USA lineage +B.1.591 USA lineage +B.1.592 Canadian lineage +B.1.593 USA lineage +B.1.594 USA lineage +B.1.595 USA (was B.1.2) +B.1.595.1 USA (FL into Louisiana) +B.1.595.2 USA (AZ) +B.1.595.3 USA (up the east coast) +B.1.595.4 USA (MN) +B.1.596 USA lineage +B.1.596.1 Kenyan lineage +B.1.597 France, Algeria (previously part of B.1.367 that jumped to a new part of the tree) +B.1.598 Canada (from NY) +B.1.599 USA, Canada (previously part of B.1.311 that jumped to a new part of the tree) +B.1.600 Bolivia/ Spain lineage +B.1.601 USA lineage +B.1.602 USA lineage +B.1.603 USA lineage +B.1.604 USA lineage +B.1.605 USA lineage +B.1.606 USA lineage (previously part of B.1.325 that jumped to a new part of the tree) +B.1.607 England (previously part of B.1.369 that jumped to a new part of the tree - could also be withdrawn). +B.1.609 USA/ Mexico lineage +B.1.610 UK lineage, previously part of B.1.235 +B.1.611 Canada lineage +B.1.612 USA lineage, split out from B.1.361 +B.1.613 Danish lineage (amalgam of Danish sequences from B.1.358, B.1.288, B.1.262), split out from B.1.428 +B.1.614 Sweden +B.1.615 Canada +B.1.616 France lineage, from #31 +B.1.617 Predominantly India lineage with several spike mutations, from #38 +B.1.617.1 Predominantly India lineage with 484Q, from #49 +B.1.617.2 Predominantly India lineage with several spike mutations, from #49 +AY.1 Alias of B.1.617.2.1, in several European countries, from #95 +AY.2 Alias of B.1.617.2.2, in USA with K417N, from #107 +AY.3 Alias of B.1.617.2.3, USA lineage, from #121 +AY.3.1 Alias of B.1.617.2.3.1, USA lineage, from #147 +AY.3.2 Alias of B.1.617.2.3.2, Peru lineage, from #312 +AY.3.3 Alias of B.1.617.2.3.3, USA lineage, from #365 +AY.3.4 Alias of B.1.617.2.3.4, Bahrain lineage +AY.4 Alias of B.1.617.2.4, UK lineage, from #180 +AY.4.1 Alias of B.1.617.2.4.1, UK lineage, from #214 +AY.4.2 Alias of B.1.617.2.4.2, predominantly UK lineage, from #223 +AY.4.2.1 Alias of B.1.617.2.4.2.1, predominantly UK lineage, from #248 +AY.4.2.2 Alias of B.1.617.2.4.2.2, UK lineage, from #249 +AY.4.2.3 Alias of B.1.617.2.4.2.3, European lineage, from #356 +AY.4.2.4 Alias of B.1.617.2.4.2.4, European lineage +AY.4.2.5 Alias of B.1.617.2.4.2.5, UK lineage, from #543 +AY.4.3 Alias of B.1.617.2.4.3, lineage in several countries, from #222 +AY.4.4 Alias of B.1.617.2.4.4, lineage in several European countries, from #237 +AY.4.5 Alias of B.1.617.2.4.5, predominantly Lithuania lineage, from #241 +AY.4.6 Alias of B.1.617.2.4.6, European lineage, from #264 +AY.4.7 Alias of B.1.617.2.4.7, lineage in Aruba and other countries, from #291 +AY.4.8 Alias of B.1.617.2.4.8, UK lineage, from #304 +AY.4.9 Alias of B.1.617.2.4.9, European lineage, from #332 +AY.4.10 Alias of B.1.617.2.4.10, European lineage, from #332 +AY.4.11 Alias of B.1.617.2.4.11, European lineage +AY.4.12 Alias of B.1.617.2.4.12, Canada lineage +AY.4.13 Alias of B.1.617.2.4.13, European lineage +AY.4.14 Alias of B.1.617.2.4.14, lineage in Denmark and other countries +AY.4.15 Alias of B.1.617.2.4.15, Denmark lineage +AY.4.16 Alias of B.1.617.2.4.16, Gibraltar lineage +AY.4.17 Alias of B.1.617.2.4.17, Lithuania lineage +AY.5 Alias of B.1.617.2.5, UK lineage, from #180 +AY.5.1 Alias of B.1.617.2.5.1, Portugal lineage +AY.5.2 Alias of B.1.617.2.5.2, Portugal lineage +AY.5.3 Alias of B.1.617.2.5.3, USA lineage +AY.5.4 Alias of B.1.617.2.5.4, European lineage +AY.5.5 Alias of B.1.617.2.5.5, European lineage, formally AY.97, from #363 +AY.5.6 Alias of B.1.617.2.5.6, lineage in Saint Vincent and the Grenadines, Grenada and other countries +AY.5.7 Alias of B.1.617.2.5.7, mainly found in Israel, from #387 +AY.6 Alias of B.1.617.2.6, UK lineage, from #180 +AY.7 Alias of B.1.617.2.7, UK lineage, from #180 +AY.7.1 Alias of B.1.617.2.7.1, Denmark lineage +AY.7.2 Alias of B.1.617.2.7.2, predominantly Italy lineage in multiple other European countries +AY.8 Alias of B.1.617.2.8, UK lineage, from #180 +AY.9 Alias of B.1.617.2.9, UK lineage, from #180 +AY.9.2 Alias of B.1.617.2.9.2, European lineage +AY.9.2.1 Alias of B.1.617.2.9.2.1, Canada lineage +AY.9.2.2 Alias of B.1.617.2.9.2.2, Sweden lineage, from #284 +AY.10 Alias of B.1.617.2.10, UK lineage, from #180 +AY.11 Alias of B.1.617.2.11, UK lineage, from #142 +AY.13 Alias of B.1.617.2.13, USA lineage, from #198 +AY.14 Alias of B.1.617.2.14, USA lineage, from #198 +AY.15 Alias of B.1.617.2.15, Canada lineage, from #198 +AY.16 Alias of B.1.617.2.16, lineage in Kenya and multiple other countries, from #198 +AY.16.1 Alias of B.1.617.2.16.1, France lineage +AY.17 Alias of B.1.617.2.17, Ireland and Northern Ireland lineage, from #198 +AY.18 Alias of B.1.617.2.18, Canada lineage, from #198 +AY.19 Alias of B.1.617.2.19, South Africa lineage, from #198 +AY.20 Alias of B.1.617.2.20, USA and Mexico lineage, from #198 +AY.20.1 Alias of B.1.617.2.20.1, Czech Republic lineage, from #318 +AY.21 Alias of B.1.617.2.21, lineage predominantly in Italy and Switzerland, from #198 +AY.22 Alias of B.1.617.2.22, predominantly Portugal lineage, from #198 +AY.23 Alias of B.1.617.2.23, predominantly Singapore and Indonesia lineage, from #175 +AY.23.1 Alias of B.1.617.2.23.1, Singapore lineage, from #237 +AY.23.2 Alias of B.1.617.2.23.2, European lineage, from #265 +AY.24 Alias of B.1.617.2.24, predominantly Indonesia lineage, from #175 +AY.24.1 Alias of B.1.617.2.24.1, Brunei lineage +AY.25 Alias of B.1.617.2.25, USA lineage, from #181 +AY.25.1 Alias of B.1.617.2.25.1, Canada and USA lineage, from #313 +AY.25.1.1 Alias of B.1.617.2.25.1.1, Peru lineage, from #355 +AY.25.1.2 Alias of B.1.617.2.25.1.2, Trinidad and Tobago lineage +AY.25.2 Alias of B.1.617.2.25.2, Argentina lineage +AY.25.3 Alias of B.1.617.2.25.3, Canada and USA lineage +AY.26 Alias of B.1.617.2.26, USA and Mexico lineage, from #188 +AY.26.1 Alias of B.1.617.2.26.1, Peru lineage, from #278 +AY.27 Alias of B.1.617.2.27, Canada lineage, from #196 +AY.28 Alias of B.1.617.2.28, Sri Lanka lineage, from #199 +AY.29 Alias of B.1.617.2.29, Japan lineage, from #208 +AY.29.1 Alias of B.1.617.2.29.1, Japan lineage, from #224 +AY.29.2 Alias of B.1.617.2.29.2, Japan lineage, from #381 +AY.30 Alias of B.1.617.2.30, Thailand and Cambodia lineage, from #207 +AY.31 Alias of B.1.617.2.31, lineage associated with Myanmar. At the time of designation, almost all sequences in this lineage were from Myanmar or had travel history from Myanmar, from #206 +AY.32 Alias of B.1.617.2.32, South Africa lineage, from #209 +AY.33 Alias of B.1.617.2.33, Lineage circulating mostly in Belgium, Denmark, France, Netherlands, Germany, from #215 and #219 +AY.33.1 Alias of B.1.617.2.33.1, Reunion and France lineage, from #370 +AY.33.2 Alias of B.1.617.2.33.2, mainly found in Germany, Poland, Gibraltar and Spain, from #403 +AY.34 Alias of B.1.617.2.34, lineage with spike Q677H circulating in multiple countries, from #217 +AY.34.1 Alias of B.1.617.2.34.1, lineage in multiple countries including Gambia, Senegal, Benin and Mali, from #255 +AY.34.1.1 Alias of B.1.617.2.34.1.1, Brazil and Chile lineage, from #255 +AY.34.2 Alias of B.1.617.2.34.2, lineage in multiple countries including Martinique, from #269 +AY.35 Alias of B.1.617.2.35, lineage with spike E484Q circulating in USA, from #217 +AY.36 Alias of B.1.617.2.36, lineage predominantly in Nigeria, UK and USA, from #225 +AY.36.1 Alias of B.1.617.2.36.1, lineage in Germany and other countries, from #434 +AY.37 Alias of B.1.617.2.37, lineage predominantly in Liberia, USA and France, from #228 +AY.38 Alias of B.1.617.2.38, lineage predominantly in South Africa, from #229 +AY.39 Alias of B.1.617.2.39, predominantly USA lineage, from #234 +AY.39.1 Alias of B.1.617.2.39.1, Australia and USA lineage, from #234 +AY.39.1.1 Alias of B.1.617.2.39.1.1, predominantly New Zealand lineage, from #234 +AY.39.1.2 Alias of B.1.617.2.39.1.2, Australia lineage, from #307 +AY.39.1.3 Alias of B.1.617.2.39.1.3, Australia lineage, from #339 +AY.39.1.4 Alias of B.1.617.2.39.1.4, Australian lineage, from #438 +AY.39.2 Alias of B.1.617.2.39.2, Peru lineage, from #295 +AY.39.3 Alias of B.1.617.2.39.3, Trinidad and Tobago lineage +AY.40 Alias of B.1.617.2.40, Reunion lineage, from #237 +AY.41 Alias of B.1.617.2.41, European lineage, from #237 +AY.42 Alias of B.1.617.2.42, European lineage, from #239 +AY.42.1 Alias of B.1.617.2.42.1, lineage in Bonaire, Curacao and other countries, from #331 +AY.43 Alias of B.1.617.2.43, European lineage, from #240 +AY.43.1 Alias of B.1.617.2.43.1, Brazil lineage, from #319 +AY.43.2 Alias of B.1.617.2.43.2, Brazil lineage, from #319 +AY.43.3 Alias of B.1.617.2.43.3, Chile lineage, from #337 +AY.43.4 Alias of B.1.617.2.43.4, Switzerland lineage, from #317 +AY.43.5 Alias of B.1.617.2.43.5, Portugal lineage, from #335 +AY.43.6 Alias of B.1.617.2.43.6, Denmark lineage, from #315 +AY.43.7 Alias of B.1.617.2.43.7, Brazil lineage, from #378 +AY.43.8 Alias of B.1.617.2.43.8, lineage in Netherlands, Suriname and other countries +AY.43.9 Alias of B.1.617.2.43.9, Slovakia lineage +AY.44 Alias of B.1.617.2.44, USA lineage, from #242 +AY.45 Alias of B.1.617.2.45, South Africa lineage, from #246 +AY.46 Alias of B.1.617.2.46, Africa lineage, from #247 +AY.46.1 Alias of B.1.617.2.46.1, USA lineage, from #247 +AY.46.2 Alias of B.1.617.2.46.2, Germany and Turkey lineage, from #247 +AY.46.3 Alias of B.1.617.2.46.3, Brazil lineage, from #247 +AY.46.4 Alias of B.1.617.2.46.4, USA lineage, from #247 +AY.46.5 Alias of B.1.617.2.46.5, UK lineage, from #247 +AY.46.6 Alias of B.1.617.2.46.6, European lineage, from #247 +AY.46.6.1 Alias of B.1.617.2.46.6.1, Italy lineage, from #369 +AY.47 Alias of B.1.617.2.47, USA lineage, from #254 +AY.48 Alias of B.1.617.2.48, USA lineage +AY.49 Alias of B.1.617.2.49, USA lineage +AY.50 Alias of B.1.617.2.50, Ireland lineage +AY.51 Alias of B.1.617.2.51, European lineage +AY.52 Alias of B.1.617.2.52, USA lineage +AY.53 Alias of B.1.617.2.53, European lineage +AY.54 Alias of B.1.617.2.54, USA lineage +AY.55 Alias of B.1.617.2.55, lineage in Rwanda and other countries +AY.56 Alias of B.1.617.2.56, USA lineage +AY.57 Alias of B.1.617.2.57, Vietnam lineage +AY.58 Alias of B.1.617.2.58, European lineage, from #286 +AY.59 Alias of B.1.617.2.59, Malaysia lineage +AY.60 Alias of B.1.617.2.60, European lineage +AY.61 Alias of B.1.617.2.61, Italy lineage +AY.62 Alias of B.1.617.2.62, USA and Mexico lineage +AY.63 Alias of B.1.617.2.63, Norway lineage, from #286 +AY.64 Alias of B.1.617.2.64, USA lineage +AY.65 Alias of B.1.617.2.65, lineage in Bahrain and other countries +AY.66 Alias of B.1.617.2.66, European lineage, from #271 +AY.67 Alias of B.1.617.2.67, USA lineage +AY.68 Alias of B.1.617.2.68, European lineage +AY.69 Alias of B.1.617.2.69, South Korea lineage, from #260 +AY.70 Alias of B.1.617.2.70, European lineage +AY.71 Alias of B.1.617.2.71, European lineage +AY.72 Alias of B.1.617.2.72, European lineage +AY.73 Alias of B.1.617.2.73, European lineage +AY.74 Alias of B.1.617.2.74, Canada lineage +AY.75 Alias of B.1.617.2.75, USA and European lineage +AY.75.2 Alias of B.1.617.2.75.2, Philippines lineage +AY.75.3 Alias of B.1.617.2.75.3, Japan lineage +AY.76 Alias of B.1.617.2.76, predominantly Malaysia lineage +AY.77 Alias of B.1.617.2.77, USA lineage +AY.78 Alias of B.1.617.2.78, Germany and Turkey lineage +AY.79 Alias of B.1.617.2.79, predominantly Malaysia lineage +AY.80 Alias of B.1.617.2.80, European lineage +AY.81 Alias of B.1.617.2.81, USA lineage +AY.82 Alias of B.1.617.2.82, Fiji lineage +AY.83 Alias of B.1.617.2.83, USA lineage +AY.84 Alias of B.1.617.2.84, European lineage +AY.85 Alias of B.1.617.2.85, Thailand lineage +AY.86 Alias of B.1.617.2.86, Canada and USA lineage +AY.87 Alias of B.1.617.2.87, UK lineage +AY.88 Alias of B.1.617.2.88, lineage in Ghana and other countries +AY.90 Alias of B.1.617.2.90, UK lineage +AY.91 Alias of B.1.617.2.91, lineage in South Africa, Namibia and other countries +AY.91.1 Alias of B.1.617.2.91.1, European lineage +AY.92 Alias of B.1.617.2.92, European lineage +AY.93 Alias of B.1.617.2.93, Canada lineage +AY.94 Alias of B.1.617.2.94, European lineage +AY.95 Alias of B.1.617.2.95, Maldives and European lineage +AY.98 Alias of B.1.617.2.98, UK lineage +AY.98.1 Alias of B.1.617.2.98.1, European lineage +AY.98.1.1 Alias of B.1.617.2.98.1.1, mainly found in Germany and Denmark, from #604 +AY.99 Alias of B.1.617.2.99, South Africa and Nigeria lineage, from #258 +AY.99.1 Alias of B.1.617.2.99.1, Brazil lineage, from #258 +AY.99.2 Alias of B.1.617.2.99.2, Brazil lineage, from #258 +AY.100 Alias of B.1.617.2.100, USA lineage +AY.101 Alias of B.1.617.2.101, Brazil and Chile lineage +AY.102 Alias of B.1.617.2.102, Peru and Chile lineage, from #272 +AY.102.1 Alias of B.1.617.2.102.1, Peru lineage, from #325 +AY.102.2 Alias of B.1.617.2.102.2, Peru lineage, from #330 +AY.103 Alias of B.1.617.2.103, USA lineage +AY.103.1 Alias of B.1.617.2.103.1, Argentina lineage +AY.103.2 Alias of B.1.617.2.103.2, Canada lineage +AY.104 Alias of B.1.617.2.104, Sri Lanka lineage, from #289 +AY.105 Alias of B.1.617.2.105, USA lineage +AY.106 Alias of B.1.617.2.106, lineage in Jordan and other countries, from #287 +AY.107 Alias of B.1.617.2.107, USA lineage +AY.108 Alias of B.1.617.2.108, lineage in Pakistan and other countries +AY.109 Alias of B.1.617.2.109, lineage in Nigeria and other countries +AY.110 Alias of B.1.617.2.110, USA lineage +AY.111 Alias of B.1.617.2.111, UK lineage +AY.112 Alias of B.1.617.2.112, lineage in India and other countries, from #283 +AY.112.1 Alias of B.1.617.2.112.1, Bahrain lineage, from #283 +AY.112.2 Alias of B.1.617.2.112.2, mainly found in India, from #385 +AY.112.3 Alias of B.1.617.2.112.3, mainly found in Israel, from #388 +AY.113 Alias of B.1.617.2.113, USA and Mexico lineage +AY.114 Alias of B.1.617.2.114, USA lineage +AY.116 Alias of B.1.617.2.116, Africa lineage +AY.116.1 Alias of B.1.617.2.116.1, USA lineage +AY.117 Alias of B.1.617.2.117, USA lineage +AY.118 Alias of B.1.617.2.118, USA lineage +AY.119 Alias of B.1.617.2.119, USA lineage +AY.119.1 Alias of B.1.617.2.119.1, Chile and Peru lineage, from #336 +AY.119.2 Alias of B.1.617.2.119.2, USA lineage, from #288 +AY.120 Alias of B.1.617.2.120, UK lineage +AY.120.1 Alias of B.1.617.2.120.1, USA lineage +AY.120.2 Alias of B.1.617.2.120.2, South Africa lineage +AY.120.2.1 Alias of B.1.617.2.120.2.1, European lineage +AY.121 Alias of B.1.617.2.121, European lineage, from #301 +AY.121.1 Alias of B.1.617.2.121.1, Poland and Germany lineage, from #344 +AY.122 Alias of B.1.617.2.122, European lineage, from #320 +AY.122.1 Alias of B.1.617.2.122.1, Israel lineage, formally AY.12 but renamed as descends from AY.122 which was designated after AY.12, from #170 +AY.122.2 Alias of B.1.617.2.122.2, Finland and Estonia lineage, from #273 +AY.122.3 Alias of B.1.617.2.122.3, Denmark and Sweden lineage, from #371 +AY.122.4 Alias of B.1.617.2.122.4, South America and USA lineage +AY.122.5 Alias of B.1.617.2.122.5, South Korea lineage +AY.122.6 Alias of B.1.617.2.122.6, mainly found in France, from #394 +AY.123 Alias of B.1.617.2.123, Predominantly Belgium and France lineage, from #306 +AY.123.1 Alias of B.1.617.2.123.1, Belgium lineage, from #354 +AY.124 Alias of B.1.617.2.124, lineage in Portugal and other European countries, from #281 +AY.124.1 Alias of B.1.617.2.124.1, lineage in Portugal and other European countries, from #345 +AY.124.1.1 Alias of B.1.617.2.124.1.1, lineage in Mauritius and other countries +AY.125 Alias of B.1.617.2.125, European lineage, from #328 +AY.125.1 Alias of B.1.617.2.125.1, Australia lineage +AY.126 Alias of B.1.617.2.126, European lineage, from #253 +AY.127 Alias of B.1.617.2.127, lineage in India and other countries, from #342 +AY.127.1 Alias of B.1.617.2.127.1, lineage in Djibouti and other countries, from #352 +AY.127.2 Alias of B.1.617.2.127.2, Qatar lineage +AY.127.3 Alias of B.1.617.2.127.3, Qatar lineage, from #525 +AY.128 Alias of B.1.617.2.128, lineage in Estonia, Georgia and other countries, from #309 +AY.129 Alias of B.1.617.2.129, European lineage, from #329 +AY.130 Alias of B.1.617.2.130, Bahrain lineage, from #351 +AY.131 Alias of B.1.617.2.131, mainly reported from Bangladesh, from #373 +AY.132 Alias of B.1.617.2.132, Denmark lineage, from #379 +AY.133 Alias of B.1.617.2.133, France Germany and UK lineage (with some samples from elsewhere, notably Senegal and Ghana), from #380 +AY.134 Alias of B.1.617.2.134, European lineage, previously assigned AY.39.4, from #406 +B.1.617.3 Predominantly India lineage with 484Q, from #49 +B.1.618 India lineage in West Bengal, from #46 +B.1.619 Lineage in multiple countries, potentially originated in Cameroon and introduced into Europe, from #44 +B.1.619.1 South Korea lineage, from #160 +B.1.620 Lineage in multiple countries, potentially originated in Cameroon and spread within Europe post-introduction, from #54 +B.1.621 Lineage predominantly in Colombia with several spike mutations, from #57 +B.1.621.1 Lineage in multiple countries, from #115 +BB.2 Alias of B.1.621.1.2, from #232 +B.1.621.2 Lineage in multiple countries, from #232 +B.1.622 Reunion lineage, from #58 +B.1.623 Predominantly USA lineage with mutations of interest, from #25 +B.1.625 Predominantly Colombia and USA lineage, from #93 +B.1.626 Europe and USA lineage, from #118 +B.1.627 USA, Mexico and Honduras lineage, from #130 +B.1.629 Lineage circulating in several countries, from #132 +B.1.630 Lineage in several countries, from #137 +B.1.631 USA and Mexico lineage, from #146 +B.1.632 Predominantly Mexico lineage, from #156 +B.1.633 India lineage, from #155 +B.1.634 Mexico and USA lineage, from #159 +B.1.635 Mexico and USA lineage, from #159 +B.1.636 USA, Mexico and Honduras lineage, from #173 +B.1.637 Added as B.1.526.1 15 Mar 2021, but turned out not to be a descendant of B.1.526; was folded into B.1.526 from 14 Jun - 18 Aug 2021; now a separate lineage to leave B.1.526 more congruent with Iota (Nextstrain 21F / original B.1.526), from #154 +B.1.637.1 USA lineage, from #353 +B.1.638 South Africa lineage, from #205 +B.1.639 Lineage sequenced in USA, potentially associated with Puerto Rico, from #161 +B.1.640 Lineage in Africa and Europe, from #297 +B.1.640.1 Lineage in Africa and Europe, from #362 +B.1.640.2 Lineage, from #362 +B.1.641 Lineage in white-tailed deer, from #453 +B.1.9 European wide lineage with active sublineages +B.1.9.1 Scottish Lineage +B.1.9.2 USA +B.1.9.3 Belgium +B.1.9.4 European wide lineage with active cases with activity in Switzerland +B.1.9.5 European sublineage highly represented in Turkey +B.3 A European lineage - Germany & UK predominantly +B.3.1 Welsh lineage +B.4 Iranian lineage and global exports +B.4.1 Lineage from Kazakhstan within the B.4 diversity +B.4.2 Bahrain lineage +B.4.4 USA lineage +B.4.5 Australian lineage +B.4.6 Australian lineage +B.4.7 Africa and UAE +B.4.8 Cryptic lineage in Iran? Occasional international appearances, most recently Nov 2020 +B.5 Japanese lineage +B.6 Indian lineage +B.6.1 Malaysian lineage +B.6.2 Malaysian lineage +B.6.3 Singapore lineage +B.6.4 Singapore lineage +B.6.5 Australian lineage +B.6.6 Singapore lineage +B.6.8 Papua New Guinea +B.10 Northern Irish lineage +B.11 European lineage with sequences from the Netherlands, UK, Austria, Slovakia +B.12 Japanese lineage +B.13 USA lineage +B.15 UK lineage +B.18 European lineage (Iceland and England) +B.19 USA lineage +B.20 USA lineage +B.23 Lineage with representation from mainly UK sequences, but also sequences from Portugal, Iceland and Brazil +B.26 Scottish lineage +B.27 UK lineage, Curacao, Switzerland +B.28 UK lineage +B.29 Spanish/UK/ Australian lineage +B.30 Reassigned from B.2.12, USA lineage +B.31 Reassigned from B.2.5, UK/ Australia/ New Zealand lineage +B.32 Scottish lineage +B.33 UK lineage +B.34 Scottish lineage +B.35 Previously B.2.6, USA lineage +B.36 Previously B.2.11, Israel lineage +B.37 USA lineage +B.38 Belgium lineage +B.39 Previously B.2.2, USA/ UK/ Australian lineage +B.40 Previously B.2.1. Large lineage majoritively from UK and Australia with representation from Europe, Jordan, USA, India, Ghana, South Korea +B.41 Previously B.2.10, South Korean lineage +B.42 Hong Kong lineage +B.43 Hong Kong lineage +B.44 Portugal lineage +B.45 Scottish lineage +B.46 USA lineage +B.47 English lineage +B.49 Danish lineage +B.50 Indonesian lineage +B.51 USA lineage +B.52 UK lineage +B.53 Lithuanian lineage +B.55 Redesignated from B.11 (split), UK/Danish +B.56 Singapore/Malaysia/Indonesia +B.57 Largely Scottish +B.58 Largely English, UK/Canada/Australia +B.60 England +B.61 Redesignated from B.40 (split), UK +XA Recombinant lineage with parental lineages B.1.1.7 and B.1.177, UK lineage, from #63 +XB Recombinant lineage with parental lineages B.1.634 and B.1.631, Central and North America lineage, Formally B.1.628, from #189 +XC Recombinant lineage with parental lineages AY.29 and B.1.1.7, Japan lineage, from #263 +XD Recombinant lineage of Delta and BA.1, France and Denmark lineage, from #444 +XE Recombinant lineage of BA.1 and BA.2, UK lineage, from #454 +XF Recombinant lineage of Delta and BA.1, UK lineage, from #445 +XG Recombinant lineage of BA.1 and BA.2, Denmark lineage, from #447 +XH Recombinant lineage of BA.1 and BA.2, Denmark lineage, from #448 +XJ Recombinant lineage of BA.1 and BA.2, Finland lineage, from #449 +XK Recombinant lineage of BA.1 and BA.2, Belgium lineage, from #460 +XL Recombinant lineage of BA.1 and BA.2, UK lineage, from #464 +XM Recombinant lineage of BA.1.1 and BA.2, European lineage, from #472 +XN Recombinant lineage of BA.1 and BA.2, UK lineage, from #480 +XP Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #481 +XQ Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #468 +XR Recombinant lineage of BA.1.1 and BA.2, UK lineage, from #469 +XS Recombinant lineage of Delta and BA.1.1, USA lineage, from #471 +XT Recombinant lineage of BA.1 and BA.2, South Africa lineage, from #478 +XU Recombinant lineage of BA.1 and BA.2, lineage in India and other countries, from #522 +XV Recombinant lineage of BA.1 and BA.2, lineage in Denmark and Italy, from #463 +XW Recombinant lineage of BA.1 and BA.2, USA, Germany, England lineage, from #591 +XY Recombinant lineage of BA.1 and BA.2, predominantly in USA, from #606 +XZ Recombinant lineage of BA.2 and BA.1, USA lineage, from #636 +XAA Recombinant lineage of BA.1 and BA.2, USA lineage, from #664 +XAB Recombinant lineage of BA.1 and BA.2, Germany lineage, from #665 +XAC Recombinant lineage of BA.1 and BA.2, Canada and USA lineage, from #590 +XAD Recombinant lineage of BA.2 and BA.1, Germany lineage, from #607 +XAE Recombinant lineage of BA.2 and BA.1, USA and Chile lineage, from #637 +XAF Recombinant lineage of BA.1 and BA.2, Costa Rica lineage, from #676 +XAG Recombinant lineage of BA.1 and BA.2, lineage in Brazil and other countries, from #709 +XAH Recombinant lineage of BA.2 and BA.1, lineage in Slovenia and other countries, from #755 +XAJ Recombinant lineage of BA.2.12.1 and BA.4, predominantly in England, from #826 +XAK Recombinant lineage of BA.1 and BA.2, Germany lineage, from #823 +XAL Recombinant lineage of BA.1 and BA.2, Germany lineage, from #757 +XAM Recombinant lineage of BA.1.1 and BA.2.9, lineage mainly found in Panama and USA, from #759 +XAN Recombinant lineage of BA.2 and BA.5.1, lineage found most often in Spain and Denmark, from #771 +XAP Recombinant lineage of BA.2* and BA.1*, USA lineage, from #789 +XAQ Recombinant lineage of BA.1* and BA.2*, lineage mainly found in Canada, from #798 +XAR Recombinant lineage of BA.1* and BA.2*, Reunion lineage, from #860 +XAS Recombinant lineage of BA.5* and BA.2*, USA lineage, from #882 +XAT Recombinant lineage of BA.2.3.13 and BA.1*, Japan lineage, from #885 +XAU Recombinant lineage of BA.1.1* and BA.2.9*, predominantly in Spain, England and France, from #894 +XAV Recombinant lineage of BA.2* and BA.5*, mainly France, USA, and Scotland lineage, from #911 +XAW Recombinant lineage of BA.2* and AY.122, Russia lineage, from #895 +XAY Recombinant lineage of BA.2 and AY.45, South Africa lineage, from #844 +XAY.1 South Africa/USA lineage with 4 AA substitutions including S:D253G, from #1208 +XAY.1.1 South Africa with S:R346T and ORF1a:K2108N, from #1255 +XAY.1.1.1 Europe, S:D1153Y, from #1569 +GL.1 Alias of XAY.1.1.1.1, Europe, S:D420N, C19441T, from #2032 +GL.2 Alias of XAY.1.1.1.2, ORF1a:S723P, South Korea/Japan/HongKong +GL.3 Alias of XAY.1.1.1.3, ORF1a:P1640S, Germany +XAY.1.1.2 Germany/South Africa, C14838T +XAY.1.1.3 Germany/China/Luxembourg, C6040T, C8290T, T15153C +XAY.1.2 Europe, ORF1a:T3646I +XAY.2 South Africa/Denmark/Israel lineage with ORF1a:Y3765C +XAY.2.1 Denmark, N:T24A +XAY.2.2 Denmark, ORF1a:N447S +XAY.2.3 Denmark, ORF1a:A131V, from #1896 +XAY.3 South Africa/Mauritius/Switzerland/France, ORF1b:D1869Y +XAZ Recombinant lineage of BA.2.5, BA.5. and BA.2.5, predominantly found in France, Germany, Croatia, Denmark and USA, from #797 +XBA Recombinant lineage of perhaps AY.45 and perhaps BA.2 (with perhaps 5 breakpoints), South_Africa lineage, constellation 2, from #844 +XBB Recombinant lineage of BJ.1 and BM.1.1.1 with breakpoint in S1, found in USA and Singapore, from #1058 +XBB.1 Mostly Bangladesh and Singapore, defined by S:G252V, from #1088 +XBB.1.1 Singapore/Denmark, defined by ORF1a:P309L +XBB.1.2 Singapore, defined by S:S640F +XBB.1.3 Singapore, India/Italy, defined by S:A484T, pre ORF8:8* +XBB.1.4 Europe, S:T883I +XBB.1.4.1 Mainly Denmark, Norway and Sweden, defined by S:S673G, from #1352 +XBB.1.4.2 S:486P, ORf1a:V3595F, Brazil, from #2031 +XBB.1.5 USA, S:F486P +XBB.1.5.1 USA, S:T573I +HJ.1 Alias of XBB.1.5.1.1, S:E324K, C4543T, USA +XBB.1.5.2 USA, S:T284I, S:K147I +XBB.1.5.3 USA, S:A411S +JK.1 Alias of XBB.1.5.3.1, S:K304Q, USA, from #1798 +XBB.1.5.4 USA, S:T883I directly on XBB.1.5 polytomy +KM.1 Alias of XBB.1.5.4.1, S:K478R, S:M177I, S:N185D, N:A155V, ORF1a:T3696A, Guinea/Senegal +XBB.1.5.5 USA, S:K1181I +XBB.1.5.6 USA, S:V952I +XBB.1.5.7 USA, ORF1b:V248F +EM.1 Alias of XBB.1.5.7.1, UK, S:R214L +XBB.1.5.8 USA, N:R10Q +XBB.1.5.9 USA, N:S327L +XBB.1.5.10 S:F456L (T22928C), USA-NC, from #1614 +XBB.1.5.11 ORF1a:G401S +XBB.1.5.12 S:T323I +XBB.1.5.13 T21880C, G28079T +EK.1 Alias of XBB.1.5.13.1, S:K417S, Austria, from #1638 +EK.2 Alias of XBB.1.5.13.2, S:T259I, USA +EK.2.1 Alias of XBB.1.5.13.2.1, S:478R, USA/Canada/Scotland +EK.3 Alias of XBB.1.5.13.3, S:P251S, Scotland/England/Ireland, from #1684 +EK.4 Alias of XBB.1.5.13.4, S:Q675K, USA/France +XBB.1.5.14 C2695T, Europe/US +EL.1 Alias of XBB.1.5.14.1, S:Q675H, Europe, from #1631 +XBB.1.5.15 G15957T, USA +FD.1 Alias of XBB.1.5.15.1, ORF7b:E3*, England/Canada +FD.1.1 Alias of XBB.1.5.15.1.1, S:F456L (T22928C), Canada-QC +FD.2 Alias of XBB.1.5.15.2, S:Q146K, ORF1a:G519S, USA, from #1600 +FD.2.1 Alias of XBB.1.5.15.2.1, ORF1a:D3022N, Peru +FD.3 Alias of XBB.1.5.15.3, S:A348S, T8503C, USA/Finland/Japan +FD.4 Alias of XBB.1.5.15.4, ORF1a:L4191F, USA +FD.4.1 Alias of XBB.1.5.15.4.1, ORF1a:T4355I, ORF1b:I2634F +FD.5 Alias of XBB.1.5.15.5, ORF10:A8V, Peru +FD.5.1 Alias of XBB.1.5.15.5.1, S:F456L (T22928C), S:N185D, Peru, from sars-cov-2-variants/lineage-proposals#385 +XBB.1.5.16 T14766C, USA +FG.1 Alias of XBB.1.5.16.1, S:T284I, S:R403K, S:L513F, USA, from #1751 +FG.2 Alias of XBB.1.5.16.2, S:D178N, USA/Europe +FG.3 Alias of XBB.1.5.16.3, S:I934V, England/Wales +XBB.1.5.17 C23635T, USA +FH.1 Alias of XBB.1.5.17.1, S:T883I, C4633T, USA +XBB.1.5.18 ORF1a:T2300I, England/Europe +XBB.1.5.19 ORF1b:R172C, USA +XBB.1.5.20 C9532T, USA +XBB.1.5.21 ORF1a:K322R, C22945T, USA +GC.1 Alias of XBB.1.5.21.1, S:T323I, Spain +GC.2 Alias of XBB.1.5.21.2, S:A352S, USA +XBB.1.5.22 ORF1a:E1498A, pre T17124C, Australia +XBB.1.5.23 ORF1a:P4220L, pre T17124C +XBB.1.5.24 C2710T, pre T17124C +GF.1 Alias of XBB.1.5.24.1, S:E748V, C19524T, from #1921 +XBB.1.5.25 S:97T on T10204C branch, South Africa, from #1643 +XBB.1.5.26 920T, USA, from #1688 +EU.1 Alias of XBB.1.5.26.1, S:P521S, Germany/Netherlands, from #1688 +EU.1.1 Alias of XBB.1.5.26.1.1, S:I410V, Germany/Netherlands, from #1688 +EU.1.1.1 Alias of XBB.1.5.26.1.1.1, C21646T, Germany +EU.1.1.2 Alias of XBB.1.5.26.1.1.2, S:A1070S, Germany/Finland/Denmark/Sweden +EU.1.1.3 Alias of XBB.1.5.26.1.1.3, S:F157L, Europe, from sars-cov-2-variants/lineage-proposals#312 +XBB.1.5.27 S:K478R, on T11431C branch, USA +XBB.1.5.28 S:K478R, on 17124C polytomy, USA +XBB.1.5.29 S:A348V, USA-NE +XBB.1.5.30 S:A348T, USA, from #1660 +HM.1 Alias of XBB.1.5.30.1, S:N481K, Canada/Australia, from sars-cov-2-variants/lineage-proposals#59 +XBB.1.5.31 T24976C, USA +XBB.1.5.32 ORF1a:T2823I, USA +XBB.1.5.33 G370A, USA +XBB.1.5.34 ORF1a:T1754I, USA +XBB.1.5.35 S:N978S, USA, from #1699 +XBB.1.5.36 C9442T, USA +XBB.1.5.37 S:K1045R, Europe +XBB.1.5.38 S:I666V, ORF1a:T403I +GG.1 Alias of XBB.1.5.38.1 S:478R, Europe, from sars-cov-2-variants/lineage-proposals#48 +XBB.1.5.39 ORF1a:M3684T, USA/Canada +FT.1 Alias of XBB.1.5.39.1, S:I197V, Canada, from #1745 +FT.2 Alias of XBB.1.5.39.2, S:K1045N, Canada-QC/USA-NY +FT.3 Alias of XBB.1.5.39.3, S:Q52H, USA, from sars-cov-2-variants/lineage-proposals#266 +FT.3.1 Alias of XBB.1.5.39.3.1, S:K478R, S:D1168H, Canada/USA, from sars-cov-2-variants/lineage-proposals#266 +FT.3.1.1 Alias of XBB.1.5.39.3.1.1, S:A348S, USA, from #2140 +FT.4 Alias of XBB.1.5.39.4, S:E180Q, Germany +XBB.1.5.40 S:478I, USA +XBB.1.5.41 S:V772I, S:P521T, USA, from #1941 +GU.1 Alias of XBB.1.5.41.1, S:N481S, USA/Canada +XBB.1.5.42 S:E281D, Asia/USA, from #1933 +GR.1 Alias of XBB.1.5.42.1, S:445S, Vietnam, from #1966 +XBB.1.5.43 C18501T, pre T17124C, Singapore/Malaysia/Indonesia +XBB.1.5.44 S:K356T, S:T572I, USA, from #1907 +HC.1 Alias of XBB.1.5.44.1, S:P631S, USA, from sars-cov-2-variants/lineage-proposals#106 +HC.2 Alias of XBB.1.5.44.2, S:F157L, Canada, from #2202 +HC.3 Alias of XBB.1.5.44.3, S:P793S, USA +HC.4 Alias of XBB.1.5.44.4, S:D1084H, ORF1a:A1352V, UK/Canada +XBB.1.5.45 S:478R, C27425T, G28079T, pre T17124C, India-GJ/MH, from #1792 +XBB.1.5.46 C5770T, C15279T, Germany/France +GB.1 Alias of XBB.1.5.46.1, S:L518V, France, from #1969 +GB.2 Alias of XBB.1.5.46.2, S:478R, England/China, from #1891 +XBB.1.5.47 C1912T, USA/England +FZ.1 Alias of XBB.1.5.47.1, S:E583D, England/Scotland +FZ.1.1 Alias of XBB.1.5.47.1.1, S:L858I, England/Scotland +FZ.2 Alias of XBB.1.5.47.2, S:Q836R, USA +XBB.1.5.48 A24730T, USA/Canada/England +GV.1 Alias of XBB.1.5.48.1, S:478R +XBB.1.5.49 T6886C, USA +HT.1 Alias of XBB.1.5.49.1, S:148T, T4798C, Mexico +HT.2 Alias of XBB.1.5.49.2, S:T51I +XBB.1.5.50 S:621S, N:T49I, USA/Canada +XBB.1.5.51 ORF1a:D3009A, USA +XBB.1.5.52 C3589T +XBB.1.5.53 S:F140I, S:L582F, S:R403K, South Africa, from #1804 +JB.1 Alias of XBB.1.5.53.1, S:N148T, South Africa +JB.1.1 Alias of XBB.1.5.53.1.1, S:K478R, South Africa +JB.2 Alias of XBB.1.5.53.2, S:K478R, South Africa/USA, from sars-cov-2-variants/lineage-proposals#209 +JB.2.1 Alias of XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa, from sars-cov-2-variants/lineage-proposals#209 +XBB.1.5.54 C14358T,C20016T,C29311T, Central/Eastern Europe +XBB.1.5.55 ORF1a:T3356I, USA/Canada +HP.1 Alias of XBB.1.5.55.1, N:L13F, USA/Mexico, from sars-cov-2-variants/lineage-proposals#277 +HP.1.1 Alias of XBB.1.5.55.1.1, S:478R, Mexico, from sars-cov-2-variants/lineage-proposals#277 +XBB.1.5.56 S:A852S, USA +XBB.1.5.57 A20379G, C28312T, pre-T17124C, probable Spike-donor of XBL, from #1973 +XBB.1.5.58 S:704L, ORF1b:V1607I, ORF6:D6G, pre T17124C, Guinea, from #1860 +XBB.1.5.59 S:F456L (T22928C), ORF1a:S2822P, England, from #1949 +XBB.1.5.60 S:M177I, ORF1a:T2106I, S:Q146K, Netherlands/Germany +XBB.1.5.61 T11536C, USA +XBB.1.5.62 C29095T +XBB.1.5.63 C346T, Germany/Mauritius +XBB.1.5.64 G8137A, C29708T, South Korea +XBB.1.5.65 C583T, Germany +XBB.1.5.66 ORF1a:G519S, USA +XBB.1.5.67 C21691T, USA +XBB.1.5.68 S:P521T, ORF3a:L71I, C18501T, USA +HZ.1 Alias of XBB.1.5.68.1, S:K478R, 23266T, USA, from sars-cov-2-variants/lineage-proposals#514 +HZ.2 Alias of XBB.1.5.68.2, ORF1a:H3580Y, USA +HZ.3 Alias of XBB.1.5.68.3, ORF1a:I3693T, USA +XBB.1.5.69 ORF1a:V2943I,C22513T, USA +XBB.1.5.70 S:L455F (G22927T), S:F456L (T22928C), ORF1a:A4068S, Brazil, from #1982 +GK.1 Alias of XBB.1.5.70.1, S:S704L, Brazil, from #2025 +GK.1.1 Alias of XBB.1.5.70.1.1, S:T573I, Brazil +GK.1.1.1 Alias of XBB.1.5.70.1.1.1, C28432T +GK.1.2 Alias of XBB.1.5.70.1.2, S:N185D, Brazil, from #2093 +GK.1.2.1 Alias of XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia, from #2314 +GK.1.3 Alias of XBB.1.5.70.1.3, ORF1a:E633A, ORF1b:D1130G, USA/Canada, from sars-cov-2-variants/lineage-proposals#179 +GK.1.4 Alias of XBB.1.5.70.1.4, S:478R, S:98F, Brazil, from sars-cov-2-variants/lineage-proposals#504 +GK.1.5 Alias of XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil +GK.1.6 Alias of XBB.1.5.70.1.6, ORF3a:V50I, Colombia, from sars-cov-2-variants/lineage-proposals#643 +GK.1.6.1 Alias of XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia, from sars-cov-2-variants/lineage-proposals#643 +GK.1.7 Alias of XBB.1.5.70.1.7, S:F186L, T11695C, Europe +GK.1.8 Alias of XBB.1.5.70.1.8, S:E554K, S:A475V, Brazil, from sars-cov-2-variants/lineage-proposals#643 +GK.1.8.1 Alias of XBB.1.5.70.1.8.1, S:K187I, S:A222P, Brazil/Paraguay, from sars-cov-2-variants/lineage-proposals#1127 +GK.1.9 Alias of XBB.1.5.70.1.9, C17010T, USA +GK.1.10 Alias of XBB.1.5.70.1.10, Orf1a:I573V, Orf1a:T4129I, Orf9b:T95M, Brazil, from #2375 +GK.1.10.1 Alias of XBB.1.5.70.1.10.1, S:A475V, C29668T, Brazil, from #2479 +KN.1 Alias of XBB.1.5.70.1.10.1.1, S:Y200C, Brazil, from #2479 +KN.1.1 Alias of XBB.1.5.70.1.10.1.1.1, S:N450D, Brazil, from #2479 +GK.1.11 Alias of XBB.1.5.70.1.11, S:A475V, ORF1a:P309L, Brazil, from sars-cov-2-variants/lineage-proposals#643 +GK.1.11.1 Alias of XBB.1.5.70.1.11.1, S:I68V, Brazil +GK.2 Alias of XBB.1.5.70.2, S:V511I, from sars-cov-2-variants/lineage-proposals#300 +GK.2.1 Alias of XBB.1.5.70.2.1, ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C +GK.2.1.1 Alias of XBB.1.5.70.2.1.1, S:P1162S, from sars-cov-2-variants/lineage-proposals#716 +GK.2.2 Alias of XBB.1.5.70.2.2, S:E554D, from sars-cov-2-variants/lineage-proposals#470 +GK.2.3 Alias of XBB.1.5.70.2.3, S:K356T, England, from sars-cov-2-variants/lineage-proposals#813 +GK.2.4 Alias of XBB.1.5.70.2.4, S:K356T, USA-NY, from sars-cov-2-variants/lineage-proposals#823 +GK.3 Alias of XBB.1.5.70.3, ORF1a:A876S, Brazil/USA/Canada +GK.3.1 Alias of XBB.1.5.70.3.1, S:A475V, USA, from sars-cov-2-variants/lineage-proposals#643 +GK.3.2 Alias of XBB.1.5.70.3.2, S:T572I, USA, from #2272 +GK.4 Alias of XBB.1.5.70.4, S:A475V, ORF1a:T2859I, ORF1ab:T4711I, from #2276 +GK.5 Alias of XBB.1.5.70.5, S:G181V, Brazil, from sars-cov-2-variants/lineage-proposals#736 +GK.5.1 Alias of XBB.1.5.70.5.1, S:E180K, from sars-cov-2-variants/lineage-proposals#736 +GK.6 Alias of XBB.1.5.70.6, S:N556K, S:E583A, from sars-cov-2-variants/lineage-proposals#715 +GK.7 Alias of XBB.1.5.70.7, N:D3G, from sars-cov-2-variants/lineage-proposals#907 +GK.8 Alias of XBB.1.5.70.8, ORF6:E55Q, Brazil, from sars-cov-2-variants/lineage-proposals#909 +GK.8.1 Alias of XBB.1.5.70.8.1, S:N185I, S:A475V, from sars-cov-2-variants/lineage-proposals#909 +GK.9 Alias of XBB.1.5.70.9, S:T307S, Brazil +GK.10 Alias of XBB.1.5.70.10, S:E554G, Brazil, from sars-cov-2-variants/lineage-proposals#761 +GK.11 Alias of XBB.1.5.70.11, S:T883I, Brazil +GK.12 Alias of XBB.1.5.70.12, S:T76I, S:N450D, Brazil +XBB.1.5.71 S:V511I, Spain +XBB.1.5.72 S:F456L (T22928C), ORF1a:G445S, T9823C, T10204C, South America +XBB.1.5.73 T28271C, USA/Peru +GN.1 Alias of XBB.1.5.73.1, S:F456L (T22928C), Peru/Costa Rica +GN.1.1 Alias of XBB.1.5.73.1.1, ORF1b:A1643V, Peru +GN.1.2 Alias of XBB.1.5.73.1.2, S:Q321L +GN.1.3 Alias of XBB.1.5.73.1.3, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#816 +GN.1.4 Alias of XBB.1.5.73.1.4, S:G181V, Peru, from #2349 +GN.2 Alias of XBB.1.5.73.2, ORF3a:A99G, Peru +GN.3 Alias of XBB.1.5.73.3, C27143T, Peru +GN.4 Alias of XBB.1.5.73.4, ORF1a:Q3966L, Peru +GN.5 Alias of XBB.1.5.73.5, ORF1a:L1110I, ORF1a:S4135F, Peru +XBB.1.5.74 S:K462R, ORF1b:V728I, Peru, from #1998 +XBB.1.5.75 C3695T, Peru/France +XBB.1.5.76 ORF1a:T3696A, Chile +XBB.1.5.77 T18732C, Colombia/USA +HR.1 Alias of XBB.1.5.77.1, S:478R, N:I292V, Costa Rica/USA, from sars-cov-2-variants/lineage-proposals#323 +HR.1.1 Alias of XBB.1.5.77.1.1, S:K304N, Costa Rica, from #2372 +XBB.1.5.78 ORF1a:N460D, Mexico +XBB.1.5.79 N:Q260L, Mexico/USA +XBB.1.5.80 A16812G, C21812T, USA/Romania +XBB.1.5.81 S:478R, G4657A, South Africa +XBB.1.5.82 S:K444R, Sweden/Reunion +XBB.1.5.83 A10624G, South Africa +XBB.1.5.84 S:M177I, South Africa +XBB.1.5.85 S:L176F, S:478R, Trinidad and Tobago/Hong Kong +XBB.1.5.86 ORF1a:G2868S, Brazil +HA.1 Alias of XBB.1.5.86.1, S:F456L (T22930A), Brazil/Canada +HA.2 Alias of XBB.1.5.86.2, S:P521S, Brazil +XBB.1.5.87 S:478R, ORF1a:E1633K, ORF1a:M1588K, C9763T, C20946T, pre T17124C, Indonesia +XBB.1.5.88 C2299T, South Africa +XBB.1.5.89 S:478R, S:554A, Canada/Italy/France, from sars-cov-2-variants/lineage-proposals#175 +XBB.1.5.90 S:P621S, ORF1ab:S6713L, Belgium/France, from #1849 +XBB.1.5.91 S:P621S, USA +XBB.1.5.92 ORF1a:T1168I, Ecuador +HQ.1 Alias of XBB.1.5.92.1, S:E554K, Ecuador, from sars-cov-2-variants/lineage-proposals#170 +XBB.1.5.93 C337T, C19186T, USA, from sars-cov-2-variants/lineage-proposals#363 +HD.1 Alias of XBB.1.5.93.1, S:T346I, USA/Dominican Republic, from sars-cov-2-variants/lineage-proposals#363 +HD.1.1 Alias of XBB.1.5.93.1.1, S:K356T, Dominican Republic, from sars-cov-2-variants/lineage-proposals#363 +XBB.1.5.94 S:Q613H, T25461C, France +XBB.1.5.95 ORF1a:A1851V +HS.1 Alias of XBB.1.5.95.1, S:478R, Mexico +HS.1.1 Alias of XBB.1.5.95.1.1, S:F456L (T22928C), USA, from #2237 +XBB.1.5.96 C28603T +XBB.1.5.97 S:T941S, C7834T, New Zealand/Australia +XBB.1.5.98 S:E554K, ORF8:V32L, Ghana +XBB.1.5.99 ORF1a:V1122A, ORF1a:T2121I, Slovakia/Austria +XBB.1.5.100 S:V1122M, USA/Mexico +HY.1 Alias of XBB.1.5.100.1, S:478R, USA/Mexico, from sars-cov-2-variants/lineage-proposals#453 +XBB.1.5.101 ORF7a:E3Q, C14877T, Scandinavia/Poland/Vietnam +XBB.1.5.102 C6896T, C14085T, C19488T, Brazil-Amazonas +JD.1 Alias of XBB.1.5.102.1, S:L455F (G22927T), S:F456L (T22928C), A14634G, T28282C, Brazil, from #2071 +JD.1.1 Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain, from #2174 +JD.1.1.1 Alias of XBB.1.5.102.1.1.1, S:Y248H, from sars-cov-2-variants/lineage-proposals#864 +JD.1.1.2 Alias of XBB.1.5.102.1.1.2, S:E583D, Ireland/UK, from sars-cov-2-variants/lineage-proposals#754 +JD.1.1.3 Alias of XBB.1.5.102.1.1.3, S:T470N, ORF1a:V1584M, France/Denmark, from sars-cov-2-variants/lineage-proposals#896 +JD.1.1.4 Alias of XBB.1.5.102.1.1.4, S:E554G, Australia, from #2380 +JD.1.1.5 Alias of XBB.1.5.102.1.1.5, S:Q677R, USA/Canada, from sars-cov-2-variants/lineage-proposals#1079 +JD.1.1.6 Alias of XBB.1.5.102.1.1.6, S:M153V, Brazil +JD.1.1.7 Alias of XBB.1.5.102.1.1.7, ORF1b:R2257S +JD.1.1.8 Alias of XBB.1.5.102.1.1.8, ORF1a:N1094K, without C19185T, Brazil +KK.1 Alias of XBB.1.5.102.1.1.8.1, S:D1153H, Brazil/USA, from sars-cov-2-variants/lineage-proposals#1210 +KK.2 Alias of XBB.1.5.102.1.1.8.2, S:N481K, Brazil, from sars-cov-2-variants/lineage-proposals#1277 +JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil, from sars-cov-2-variants/lineage-proposals#136 +JD.1.2.1 Alias of XBB.1.5.102.1.2.1, S:E554Q, from sars-cov-2-variants/lineage-proposals#870 +JD.1.2.2 Alias of XBB.1.5.102.1.2.2, S:A1078T, Brazil +JD.2 Alias of XBB.1.5.102.2, ORF1b:H2388Y, G4255A, Brazil +JD.2.1 Alias of XBB.1.5.102.2.1, S:E554K, Brazil +XBB.1.5.103 S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina, from #2192 +KA.1 Alias of XBB.1.5.103.1, S:E554K, Argentina/France/Spain, from sars-cov-2-variants/lineage-proposals#822 +XBB.1.5.104 S:K304Q, USA, from #1798 +XBB.1.5.105 S:K304N, USA/Europe +XBB.1.5.106 S:A623V, ORF1a:V28I, ORF1a:R3542H, Guatemala, from #2270 +XBB.1.5.107 C24130T, Argentina/Uruguay/Bolivia +JZ.1 Alias of XBB.1.5.107.1, S:F456L (T22928C), Argentina/Brazil, from sars-cov-2-variants/lineage-proposals#224 +XBB.1.5.108 S:F456L (T22930A), S:K304N , from sars-cov-2-variants/lineage-proposals#550 +XBB.1.5.109 S:F456L (T22928C), ORF1a:T654A, from #2262 +XBB.1.5.110 ORF1aT4129I, Mexico +XBB.1.6 USA, S:L216F, S:H146K, from #1428 +XBB.1.7 USA-NY, S:V608I +XBB.1.8 Denmark, S:186insSGG, C3241T, from #1455 +XBB.1.9 ORF1a:G1819S, ORF1a:T4175I, on ORF9b:I5T branch +XBB.1.9.1 S:F486P (after C11956T), Indonesia/Singapore/Malaysia/England +FL.1 Alias of XBB.1.9.1.1, S:701V, ORF1a:G993S, from #1808 +FL.1.1 Alias of XBB.1.9.1.1.1, ORF1b:Q2635P, USA/Australia +FL.1.1.1 Alias of XBB.1.9.1.1.1.1, S:A688S, Australia/Mauritius +FL.1.2 Alias of XBB.1.9.1.1.2, ORF1a:T4311I, South Korea/Italy/Spain +FL.1.3 Alias of XBB.1.9.1.1.3, ORF1a:T1881I, ORF1b:M606I, South Korea +FL.1.4 Alias of XBB.1.9.1.1.4, S:478R, S:Q1208H, Vietnam, from #1985 +FL.1.5 Alias of XBB.1.9.1.1.5, S:F456L (T22928C), ORF1b:K2557R, from #2036 +FL.1.5.1 Alias of XBB.1.9.1.1.5.1, S:478R, from #2036 +HN.1 Alias of XBB.1.9.1.1.5.1.1, S:A67S, Dominican Republic, from sars-cov-2-variants/lineage-proposals#408 +HN.2 Alias of XBB.1.9.1.1.5.1.2, ORF1b:P223S, from sars-cov-2-variants/lineage-proposals#676 +HN.2.1 Alias of XBB.1.9.1.1.5.1.2.1, S:Q836R, from sars-cov-2-variants/lineage-proposals#676 +HN.3 Alias of XBB.1.9.1.1.5.1.3, S:S494P +HN.3.1 Alias of XBB.1.9.1.1.5.1.3.1, S:D253G, from sars-cov-2-variants/lineage-proposals#383 +HN.4 Alias of XBB.1.9.1.1.5.1.4, ORF1a:T403I +HN.4.1 Alias of XBB.1.9.1.1.5.1.4.1, S:A1020S, from sars-cov-2-variants/lineage-proposals#1054 +HN.4.1.1 Alias of XBB.1.9.1.1.5.1.4.1.1, S:I68T, S:L452R, S:E554K, New Zealand/Canada, from sars-cov-2-variants/lineage-proposals#1054 +HN.4.2 Alias of XBB.1.9.1.1.5.1.4.2, S:Q14H, Georgia/Russia, from sars-cov-2-variants/lineage-proposals#971 +HN.5 Alias of XBB.1.9.1.1.5.1.5, S:E554K, from sars-cov-2-variants/lineage-proposals#936 +HN.6 Alias of XBB.1.9.1.1.5.1.6, ORF1a:D1933A +HN.7 Alias of XBB.1.9.1.1.5.1.7, C6388T, T20028C, C20115T, Europe +HN.8 Alias of XBB.1.9.1.1.5.1.8, S:ins248KRD, ORF1a:E2042D, not requiring S:494P, Haiti/USA, from #2438 +FL.1.5.2 Alias of XBB.1.9.1.1.5.2, S:N481K, S:H681R, England/France/Denmark, from sars-cov-2-variants/lineage-proposals#614 +KC.1 Alias of XBB.1.9.1.1.5.2.1, S:S490P, ORF1a:T4129I, ORF1a:S723F, Europe, from sars-cov-2-variants/lineage-proposals#614 +KC.1.1 Alias of XBB.1.9.1.1.5.2.1.1, S:V1228L, England +FL.1.6 Alias of XBB.1.9.1.1.6, S:N481K, S:Q1208H, from sars-cov-2-variants/lineage-proposals#59 +FL.1.7 Alias of XBB.1.9.1.1.7, S:478R, S:C1235F, Indonesia, from #1985 +FL.1.8 Alias of XBB.1.9.1.1.8, S:K478R, S:P521T, M:I8V, Russia, from sars-cov-2-variants/lineage-proposals#1058 +FL.2 Alias of XBB.1.9.1.2, T4579A +FL.2.1 Alias of XBB.1.9.1.2.1, C10228T, Germany, global +FL.2.2 Alias of XBB.1.9.1.2.2, S:T478R, Indonesia, from #1927 +FL.2.2.1 Alias of XBB.1.9.1.2.2.1, S:T307I, Indonesia, from #2027 +FL.2.3 Alias of XBB.1.9.1.2.3, ORF1b:K1383R, China, from #2016 +FL.2.3.1 Alias of XBB.1.9.1.2.3.1, S:K356T, China +FL.2.4 Alias of XBB.1.9.1.2.4, ORF8:S67F, China +FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E, from sars-cov-2-variants/lineage-proposals#342 +FL.2.6 Alias of XBB.1.9.1.2.6, S:N641K, from #2180 +FL.2.7 Alias of XBB.1.9.1.2.7, ORF1a:A2618T, from sars-cov-2-variants/lineage-proposals#552 +FL.2.7.1 Alias of XBB.1.9.1.2.7.1, S:K478R on ORF1a:V3718F branch, South Africa, from sars-cov-2-variants/lineage-proposals#552 +FL.3 Alias of XBB.1.9.1.3, T1753C, England +FL.3.1 Alias of XBB.1.9.1.3.1, ORF1a:T2264I, England +FL.3.2 Alias of XBB.1.9.1.3.2, T8830C, England/Spain +FL.3.3 Alias of XBB.1.9.1.3.3, ORF1a:A4285V,ORF1a:V2998I,ORF1a:E772K, England +FL.3.4 Alias of XBB.1.9.1.3.4, G10642C, T26232C, England +FL.4 Alias of XBB.1.9.1.4, ORF1b:V1092F +FL.4.1 Alias of XBB.1.9.1.4.1, S:N450I +FL.4.1.1 Alias of XBB.1.9.1.4.1.1, S:K478R, ORF1a:I2286T, Indonesia/Australia, from sars-cov-2-variants/lineage-proposals#107 +FL.4.2 Alias of XBB.1.9.1.4.2, ORF1a:T951I, China +FL.4.3 Alias of XBB.1.9.1.4.3, S:A766S, G7393T, Myanmar, from sars-cov-2-variants/lineage-proposals#153 +FL.4.4 Alias of XBB.1.9.1.4.4, ORF1a:T1542I, T24544C, S:478T (reversion), Indonesia +FL.4.5 Alias of XBB.1.9.1.4.5, ORF8:S67F, ORF1a:D1228G, C23635T, from #2018 +FL.4.6 Alias of XBB.1.9.1.4.6, T5098C, C13965T, Australia/China +FL.4.7 Alias of XBB.1.9.1.4.7, S:L452R, Singapore, from sars-cov-2-variants/lineage-proposals#92 +FL.4.8 Alias of XBB.1.9.1.4.8, S:478R, Indonesia, from #2024 +FL.4.9 Alias of XBB.1.9.1.4.9, S:S254P, ORF3a:D173G, from #2081 +FL.4.10 Alias of XBB.1.9.1.4.10, S:V1129I, China, from #2087 +FL.4.11 Alias of XBB.1.9.1.4.11, S:D1259Y, N:T334I, China/Japan，from #2074 +FL.5 Alias of XBB.1.9.1.5, N:T362I +FL.5.1 Alias of XBB.1.9.1.5.1, S:M177T, from #2041 +FL.6 Alias of XBB.1.9.1.6, ORF1a:I849V, Bahrain/Egypt/Oman/Austria +FL.7 Alias of XBB.1.9.1.7, S:T51I +FL.8 Alias of XBB.1.9.1.8, ORF3a:I62F, Europe +FL.9 Alias of XBB.1.9.1.9, C23707T, T29691C, England +FL.10 Alias of XBB.1.9.1.10, ORF1a:C657Y, from sars-cov-2-variants/lineage-proposals#28 +FL.10.1 Alias of XBB.1.9.1.10.1, S:E554K, C4234T, 220bp deletion in ORF8, South Korea, from #2040 +FL.10.2 Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA, from #2220 +FL.10.3 Alias of XBB.1.9.1.10.3, S:G181R +FL.11 Alias of XBB.1.9.1.11, ORF1a:L349F, France/French Guiana, from #1947 +FL.12 Alias of XBB.1.9.1.12, ORF1a:C2210F +FL.13 Alias of XBB.1.9.1.13, G4354A +FL.13.1 Alias of XBB.1.9.1.13.1, S:A411S, ORF1a:P80S, China, from #1996 +FL.13.2 Alias of XBB.1.9.1.13.2, S:K356T, China, from #2073 +FL.13.2.1 Alias of XBB.1.9.1.13.2.1, S:D178H, South Korea +FL.13.3 Alias of XBB.1.9.1.13.3, T19110C +FL.13.3.1 Alias of XBB.1.9.1.13.3.1, S:E154Q, England +FL.13.4 Alias of XBB.1.9.1.13.4, S:K182E, S:F456L (T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#638 +FL.13.4.1 Alias of XBB.1.9.1.13.4.1, S:Q14H, S:A484K, from sars-cov-2-variants/lineage-proposals#638 +FL.13.5 Alias of XBB.1.9.1.13.5, S:F456L (T22928C), ORF1a:T1000I, ORF1a:L2527M, Chile/Argentina, from sars-cov-2-variants/lineage-proposals#692 +FL.14 Alias of XBB.1.9.1.14, S:V1122M, C29311T, C22978T, Russia/Finland +FL.15 Alias of XBB.1.9.1.15, S:F456L (T22928C), ORF1a:E637K, Vietnam/China/South Korea, from #1994 +FL.15.1 Alias of XBB.1.9.1.15.1, S:L455F (G22927T), ORF1a:T2007I, on ORF1a:S2185N branch, from #2293 +FL.15.1.1 Alias of XBB.1.9.1.15.1.1, S:A475V, Canada/Romania/Belgium, from sars-cov-2-variants/lineage-proposals#646 +KF.1 Alias of XBB.1.9.1.15.1.1.1, S:P251H, Australia/Canada, from sars-cov-2-variants/lineage-proposals#890 +KF.2 Alias of XBB.1.9.1.15.1.1.2, S:E183D, England/Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#1111 +FL.15.2 Alias of XBB.1.9.1.15.2, S:Q14H, C1684T, China, from sars-cov-2-variants/lineage-proposals#578 +FL.15.3 Alias of XBB.1.9.1.15.3, S:G181V, North America +FL.15.4 Alias of XBB.1.9.1.15.4, S:Q14H, on G6819A branch, from #2359 +FL.16 Alias of XBB.1.9.1.16, S:D215V, C3511T, China, from #2001 +FL.17 Alias of XBB.1.9.1.17, T3898C, C28333T +FL.17.1 Alias of XBB.1.9.1.17.1, S:N74H, South Korea +FL.17.2 Alias of XBB.1.9.1.17.2, S:L452R, ORF7a:V104L, from sars-cov-2-variants/lineage-proposals#53 +FL.18 Alias of XBB.1.9.1.18, ORF1a:T2007I +FL.18.1 Alias of XBB.1.9.1.18.1, N:T166I, A27507C, from #2019 +FL.18.1.1 Alias of XBB.1.9.1.18.1.1, S:Y200C, S:478R, Australia/Indonesia, from #2019 +FL.19 Alias of XBB.1.9.1.19, T2377C, C17502T, T24505G, South Korea +FL.19.1 Alias of XBB.1.9.1.19.1, S:F456L (T22928C), ORF1b:A1877V, Spain/Italy/Puerto Rico, from #2138 +FL.20 Alias of XBB.1.9.1.20, S:F456L (T22928C), S:Q52H, Spain, from #2072 +FL.20.1 Alias of XBB.1.9.1.20.1, S:L455W, Northern Ireland/England, from #2145 +FL.20.2 Alias of XBB.1.9.1.20.2, S:478R, from sars-cov-2-variants/lineage-proposals#571 +FL.21 Alias of XBB.1.9.1.21, A10564T +FL.21.1 Alias of XBB.1.9.1.21.1, S:D1084N, South Korea, from #2143 +FL.21.2 Alias of XBB.1.9.1.21.2, ORF1a:V1019F, ORF1a:I2873M, China, from sars-cov-2-variants/lineage-proposals#187 +FL.22 Alias of XBB.1.9.1.22, ORF1b:I1416V, T24184C +FL.23 Alias of XBB.1.9.1.23, ORF1b:V1132I, Philippines +FL.23.1 Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C23185T, C8311T +FL.23.2 Alias of XBB.1.9.1.23.2, S:S494P, ORF1a:P2256S, Philippines, from sars-cov-2-variants/lineage-proposals#381 +FL.23.2.1 Alias of XBB.1.9.1.23.2.1, S:P521T, Philippines +FL.24 Alias of XBB.1.9.1.24, S:Q613H, S:A688V, from sars-cov-2-variants/lineage-proposals#284 +FL.24.1 Alias of XBB.1.9.1.24.1, S:478R, T9139C, C24919T, Russia, from sars-cov-2-variants/lineage-proposals#789 +FL.25 Alias of XBB.1.9.1.25, S:E554K, USA/England, from #2040 +FL.26 Alias of XBB.1.9.1.26, C22264T +FL.26.1 Alias of XBB.1.9.1.26.1, S:493L, Sweden +FL.27 Alias of XBB.1.9.1.27, ORF1a:V3747I +FL.28 Alias of XBB.1.9.1.28, S:K478R, ORF1a:S1520F, ORF3a:R68I, Spain +FL.29 Alias of XBB.1.9.1.29, S:490S, ORF1b:I2331V, from #2030 +FL.30 Alias of XBB.1.9.1.30, S:484K, Greece, from #2206 +FL.30.1 Alias of XBB.1.9.1.30.1, S:A852S, Greece +FL.31 Alias of XBB.1.9.1.31, ORF1b:M657I +FL.31.1 Alias of XBB.1.9.1.31.1, S:478R, S:D80H, S:Q613H, Morocco/Europe/US/Canada, from sars-cov-2-variants/lineage-proposals#836 +FL.32 Alias of XBB.1.9.1.32, S:E554Q, S:V6L, from sars-cov-2-variants/lineage-proposals#719 +FL.32.1 Alias of XBB.1.9.1.32.1, S:F456L (T22928C), USA, from sars-cov-2-variants/lineage-proposals#719 +FL.33 Alias of XBB.1.9.1.33, ORF1b:A1377V +FL.33.1 Alias of XBB.1.9.1.33.1, S:478R, Georgia, from sars-cov-2-variants/lineage-proposals#828 +FL.34 Alias of XBB.1.9.1.34, S:D1118Y +FL.35 Alias of XBB.1.9.1.35, ORF8:S103L, South Africa +FL.35.1 Alias of XBB.1.9.1.35.1, S:478R, South Africa +FL.36 Alias of XBB.1.9.1.36, S:76I, S:190S, S:356T, S:572I, S:899S, S:1070T, England/US/Denmark, sars-cov-2-variants/lineage-proposals#805 +FL.37 Alias of XBB.1.9.1.37, C547T, C29614T +FL.38 Alias of XBB.1.9.1.38, S:K478R, S:Q613H, C25482T, Russia, from sars-cov-2-variants/lineage-proposals#1001 +FL.39 Alias of XBB.1.9.1.39, ORF1a:E633K, Russia +FL.39.1 Alias of XBB.1.9.1.39.1, S:K478R, S:P521S, Russia +FL.40 Alias of XBB.1.9.1.40, ORF1a:I3758V, Russia +XBB.1.9.2 S:F486P (after A27507C, A16878T), Indonesia/Singapore, from #1602 +EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and jmcbroome/auto-pango-designation#193 +EG.1.1 Alias of XBB.1.9.2.1.1, S:V70F and ORF1a:T403I, Luxembourg/Belgium/France +EG.1.2 Alias of XBB.1.9.2.1.2, ORF7b:H42Y, mostly Austria, from #1711 +EG.1.3 Alias of XBB.1.9.2.1.3, C3784T, A6613G, Europe +EG.1.4 Alias of XBB.1.9.2.1.4, ORF1a:S2500F, Europe +EG.1.4.1 Alias of XBB.1.9.2.1.4.1, S:P217L, South Korea +EG.1.5 Alias of XBB.1.9.2.1.5, S:S98F, Europe +EG.1.6 Alias of XBB.1.9.2.1.6, G26235T +EG.1.7 Alias of XBB.1.9.2.1.7, S:E156V, Europe +EG.1.8 Alias of XBB.1.9.2.1.8, S:S640F, ORF1b:D161G, ORF1b:P2321L, China +EG.2 Alias of XBB.1.9.2.2, S:478R, Indonesia +EG.2.1 Alias of XBB.1.9.2.2.1, S:F456L (T22930A), S:V327I, Indonesia +EG.2.2 Alias of XBB.1.9.2.2.2, S:K304N, Indonesia/Japan, from sars-cov-2-variants/lineage-proposals#517 +EG.2.3 Alias of XBB.1.9.2.2.3, S:I742V, Indonesia/Singapore, from sars-cov-2-variants/lineage-proposals#587 +EG.2.4 Alias of XBB.1.9.2.2.4, S:K356T, ORF1a:G2265D, Singapore, from sars-cov-2-variants/lineage-proposals#586 +EG.2.5 Alias of XBB.1.9.2.2.4, S:Q675H, Indonesia, from sars-cov-2-variants/lineage-proposals#445 +EG.3 Alias of XBB.1.9.2.3, ORF1a:L2778F on N:L219F branch +EG.4 Alias of XBB.1.9.2.4, C28651T +EG.4.1 Alias of XBB.1.9.2.4.1, S:I870V, N:A119S +EG.4.2 Alias of XBB.1.9.2.4.2, S:A623V, T14652C, China, from sars-cov-2-variants/lineage-proposals#46 +EG.4.3 Alias of XBB.1.9.2.4.3, S:Q613H (G23401C) +EG.4.4 Alias of XBB.1.9.2.4.4, ORF1a:Y1465C, ORF1b:H873Y, Germany/Austria +EG.4.5 Alias of XBB.1.9.2.4.5, S:478R, Indonesia/France +EG.5 Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indonesia, from #1918 +EG.5.1 Alias of XBB.1.9.2.5.1, S:Q52H +EG.5.1.1 Alias of XBB.1.9.2.5.1.1, China, from #2020 +HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China, from sars-cov-2-variants/lineage-proposals#359 +HK.1.2 Alias of XBB.1.9.2.5.1.1.1.2, S:L455F (G22927C), S:T307I, China/New Zealand , from sars-cov-2-variants/lineage-proposals#631 +HK.2 Alias of XBB.1.9.2.5.1.1.2, S:Q14H, China, from sars-cov-2-variants/lineage-proposals#432 +HK.2.1 Alias of XBB.1.9.2.5.1.1.2.1, S:L455F (G22927T), Singapore, from sars-cov-2-variants/lineage-proposals#537 +HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F (G22927T), China, from sars-cov-2-variants/lineage-proposals#414 +HK.3.1 Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China, from #2193 +HK.3.2 Alias of XBB.1.9.2.5.1.1.3.2, S:Q14K, C853T, China，from sars-cov-2-variants/lineage-proposals#730 +HK.3.2.1 Alias of XBB.1.9.2.5.1.1.3.2.1, S:Q677H, Canada, from #2362 +HK.3.2.2 Alias of XBB.1.9.2.5.1.1.3.2.2, ORF8:M1L, S:N185D, China/Australia, from sars-cov-2-variants/lineage-proposals#867 +HK.3.3 Alias of XBB.1.9.2.5.1.1.3.3, S:S256L, N:P364L, China/Singapore, from sars-cov-2-variants/lineage-proposals#744 +HK.3.4 Alias of XBB.1.9.2.5.1.1.3.4, S:P809S, from sars-cov-2-variants/lineage-proposals#764 +HK.3.5 Alias of XBB.1.9.2.5.1.1.3.5, S:P174S, Singapore, from sars-cov-2-variants/lineage-proposals#865 +HK.3.6 Alias of XBB.1.9.2.5.1.1.3.6, S:G181R, China, from sars-cov-2-variants/lineage-proposals#809 +HK.3.7 Alias of XBB.1.9.2.5.1.1.3.7, S:V171I, Singapore/China, from sars-cov-2-variants/lineage-proposals#793 +HK.3.8 Alias of XBB.1.9.2.5.1.1.3.8, S:E554K, China/Sweden, from #2377 +HK.3.9 Alias of XBB.1.9.2.5.1.1.3.9, S:T732I, Australia, from sars-cov-2-variants/lineage-proposals#1092 +HK.3.10 Alias of XBB.1.9.2.5.1.1.3.10, S:A1078S, from sars-cov-2-variants/lineage-proposals#1055 +HK.3.11 Alias of XBB.1.9.2.5.1.1.3.11, S:F186S, China +HK.3.12 Alias of XBB.1.9.2.5.1.1.3.12, S:A688T, USA, from sars-cov-2-variants/lineage-proposals#886 +HK.3.13 Alias of XBB.1.9.2.5.1.1.3.13, S:Q14R, China, from sars-cov-2-variants/lineage-proposals#601 +HK.3.14 Alias of XBB.1.9.2.5.1.1.3.14, S:A475V, ORF1b:2378T, England/Australia, from sars-cov-2-variants/lineage-proposals#978 +HK.4 Alias of XBB.1.9.2.5.1.1.4, S:T883I, China +HK.5 Alias of XBB.1.9.2.5.1.1.5, S:Q677H, China +HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, on T14988C branch UK/USA, from #2184 +HK.7 Alias of XBB.1.9.2.5.1.1.7, S:N148T, China +HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F (G22927T), on C11779T branch, China, from #2230 +HK.8.1 Alias of XBB.1.9.2.5.1.1.8.1, S:D1153Y, China, from #2356 +HK.9 Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England, from sars-cov-2-variants/lineage-proposals#564 +HK.11 Alias of XBB.1.9.2.5.1.1.11, S:G184S, China/England/SouthKorea, from #2255 +HK.11.1 Alias of XBB.1.9.2.5.1.1.11.1, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#537 +HK.12 Alias of XBB.1.9.2.5.1.1.12, S:K356T, China/Singapore +HK.13 Alias of XBB.1.9.2.5.1.1.13, S:L455F (G22927C), China, from sars-cov-2-variants/lineage-proposals#537 +HK.13.1 Alias of XBB.1.9.2.5.1.1.13.1, C13378T, A24604G +HK.13.2 Alias of XBB.1.9.2.5.1.1.13.2, S:F797L, S:D1153H, from sars-cov-2-variants/lineage-proposals#943 +HK.13.2.1 Alias of XBB.1.9.2.5.1.1.13.2.1, S:T250I, N:T379I, Greece, from #2480 +HK.14 Alias of XBB.1.9.2.5.1.1.14, S:L455F (G22927C), on C11779T branch, China, from sars-cov-2-variants/lineage-proposals#537 +HK.15 Alias of XBB.1.9.2.5.1.1.15, S:A262T, on C11779T branch, from sars-cov-2-variants/lineage-proposals#588 +HK.16 Alias of XBB.1.9.2.5.1.1.16, N:P67S, S:A684V, S:V1264L, from sars-cov-2-variants/lineage-proposals#841 +HK.17 Alias of XBB.1.9.2.5.1.1.17, S:S494P, China +HK.18 Alias of XBB.1.9.2.5.1.1.18, S:L452R, from sars-cov-2-variants/lineage-proposals#800 +HK.19 Alias of XBB.1.9.2.5.1.1.19, S:F157L +HK.20 Alias of XBB.1.9.2.5.1.1.20, S:L455F (G22927T), on ORF1a:P2144S branch, China, from sars-cov-2-variants/lineage-proposals#537 +HK.20.1 Alias of XBB.1.9.2.5.1.1.20.1, S:G482R, from sars-cov-2-variants/lineage-proposals#537 +HK.21 Alias of XBB.1.9.2.5.1.1.21, S:T470N, S:796H, from #2367 +HK.22 Alias of XBB.1.9.2.5.1.1.22, S:L452Q, S:L455F (G22927T), Australia/China, from #2357 +HK.23 Alias of XBB.1.9.2.5.1.1.23, ORF8:A65V +HK.23.1 Alias of XBB.1.9.2.5.1.1.23.1, S:L455F (G22927T), ORF1a:T2906N, from sars-cov-2-variants/lineage-proposals#537 +HK.23.1.1 Alias of XBB.1.9.2.5.1.1.23.1.1, S:A348S, China/Canada, from sars-cov-2-variants/lineage-proposals#537 +HK.24 Alias of XBB.1.9.2.5.1.1.24, S:E654K +HK.24.1 Alias of XBB.1.9.2.5.1.1.24.1, S:L455F (G22927T), Australia, from sars-cov-2-variants/lineage-proposals#537 +HK.25 Alias of XBB.1.9.2.5.1.1.25, S:K356T, S:H681R, N:P365L, and 10 more nucs, Germany/Austria/France/US, from #2327 and sars-cov-2-variants/lineage-proposals#986 +HK.26 Alias of XBB.1.9.2.5.1.1.26, S:L455F (G22927T), ORF3a:L52I, on 14988C branch, Finland, from sars-cov-2-variants/lineage-proposals#763 +HK.26.1 Alias of XBB.1.9.2.5.1.1.26.1, S:A475V, Finland, formerly HK.3.11, from sars-cov-2-variants/lineage-proposals#763 +HK.27 Alias of XBB.1.9.2.5.1.1.27, ORF1a:T1589I, China +HK.27.1 Alias of XBB.1.9.2.5.1.1.27.1, S:L455F (G22927T), China, from sars-cov-2-variants/lineage-proposals#525 +HK.27.1.1 Alias of XBB.1.9.2.5.1.1.27.1.1, S:Q14H, China +HK.28 Alias of XBB.1.9.2.5.1.1.28, C19170T, China +HK.29 Alias of XBB.1.9.2.5.1.1.29, ORF1a:G2509D, North America +HK.30 Alias of XBB.1.9.2.5.1.1.30, T26609C, China +HK.31 Alias of XBB.1.9.2.5.1.1.31, ORF1a:G604S +HK.32 Alias of XBB.1.9.2.5.1.1.32, S:Q14R, ORF1a:S2193F, China, from sars-cov-2-variants/lineage-proposals#601 +HK.33 Alias of XBB.1.9.2.5.1.1.33, S:L455F (G22927T) on C2644T branch, North America, from sars-cov-2-variants/lineage-proposals#537 +HK.34 Alias of XBB.1.9.2.5.1.1.34, S:F186S, ORF1a:V3660M, on C2644T branch, Singapore, from sars-cov-2-variants/lineage-proposals#905 +HK.34.1 Alias of XBB.1.9.2.5.1.1.34.1, S:K356T, Singapore, from sars-cov-2-variants/lineage-proposals#1048 +EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I, from sars-cov-2-variants/lineage-proposals#301 +EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T, from sars-cov-2-variants/lineage-proposals#222 +JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France, from #2218 +JG.2 Alias of XBB.1.9.2.5.1.3.2, S:G75V, Europe, from #2249 +JG.3 Alias of XBB.1.9.2.5.1.3.3, S:L455F (G22927T), S:S704L, Europe, from #2231 +JG.3.1 Alias of XBB.1.9.2.5.1.3.3.1, S:T307I, from sars-cov-2-variants/lineage-proposals#829 +JG.3.2 Alias of XBB.1.9.2.5.1.3.3.2, S:N450D, Canada, from #2376 +JG.3.3 Alias of XBB.1.9.2.5.1.3.3.3, S:A83S, Belgium, from #2363 +JG.3.4 Alias of XBB.1.9.2.5.1.3.3.4, S:478R, USA, from sars-cov-2-variants/lineage-proposals#1081 +JG.4 Alias of XBB.1.9.2.5.1.3.4, C1684T, Europe +EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R, from #2117 +JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F (G22927T), ORF3a:I47V, China/Japan, from #2208 +EG.5.1.5 Alias of XBB.1.9.2.5.1.5, ORF1a:L3293I, ORF1b:T1274I, ORF1b:L2349V, Portugal +EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA, from sars-cov-2-variants/lineage-proposals#394 +HV.1 Alias of XBB.1.9.2.5.1.6.1, S:L452R, USA +HV.1.1 Alias of XBB.1.9.2.5.1.6.1.1, S:K444T, on ORF1a:T4083M branch, USA, from sars-cov-2-variants/lineage-proposals#866 +HV.1.2 Alias of XBB.1.9.2.5.1.6.1.2, S:S514F, on ORF1a:T4083M branch, USA, from sars-cov-2-variants/lineage-proposals#957 +HV.1.3 Alias of XBB.1.9.2.5.1.6.1.3, S:493L, USA, from sars-cov-2-variants/lineage-proposals#924 +HV.1.4 Alias of XBB.1.9.2.5.1.6.1.4, S:A1078S, USA, from sars-cov-2-variants/lineage-proposals#957 +HV.1.5 Alias of XBB.1.9.2.5.1.6.1.5, S:L1265F, USA/Canada, from sars-cov-2-variants/lineage-proposals#957 +HV.1.6 Alias of XBB.1.9.2.5.1.6.1.6, ORF1a:T1794I, ORF1a:P2018S, Canada/USA +HV.1.6.1 Alias of XBB.1.9.2.5.1.6.1.6.1, S:S704L, Canada, from sars-cov-2-variants/lineage-proposals#957 +KL.1 Alias of XBB.1.9.2.5.1.6.1.6.1.1, S:K444N, Canada, from sars-cov-2-variants/lineage-proposals#1174 +KL.1.1 Alias of XBB.1.9.2.5.1.6.1.6.1.1.1, S:H1101Y, Canada +HV.1.7 Alias of XBB.1.9.2.5.1.6.1.7, S:S221L, Canada, from sars-cov-2-variants/lineage-proposals#957 +HV.1.8 Alias of XBB.1.9.2.5.1.6.1.8, S:T208M, USA, from #2432 +HV.1.9 Alias of XBB.1.9.2.5.1.6.1.9, S:N211I, S:T1117I, New Zealand, from sars-cov-2-variants/lineage-proposals#957 +HV.1.10 Alias of XBB.1.9.2.5.1.6.1.10, S:R452W, USA, from sars-cov-2-variants/lineage-proposals#1044 +HV.1.11 Alias of XBB.1.9.2.5.1.6.1.11, S:N450D, USA +HV.2 Alias of XBB.1.9.2.5.1.6.2, S:L455F (G22927T), Canada, from sars-cov-2-variants/lineage-proposals#537 +EG.5.1.7 Alias of XBB.1.9.2.5.1.7, S:K278N +EG.5.1.8 Alias of XBB.1.9.2.5.1.8, S:L455F (G22927T), China, on C29762T branch, from sars-cov-2-variants/lineage-proposals#537 +KB.1 Alias of XBB.1.9.2.5.1.8.1, S:E654V, China, from #2347 +KB.2 Alias of XBB.1.9.2.5.1.8.2, S:R214H +KB.3 Alias of XBB.1.9.2.5.1.8.2, S:A83T, from sars-cov-2-variants/lineage-proposals#1052 +KB.4 Alias of XBB.1.9.2.5.1.8.2, S:T95I, from sars-cov-2-variants/lineage-proposals#891 +EG.5.1.9 Alias of XBB.1.9.2.5.1.9, S:L176F (on ORF1a:D982G branch) +EG.5.1.10 Alias of XBB.1.9.2.5.1.10, ORF1a:I3758V, Portugal/Spain +EG.5.1.11 Alias of XBB.1.9.2.5.1.11, S:K182Q, Indonesia +JR.1 Alias of XBB.1.9.2.5.1.11.1, S:478R, ORF3a:Y91C, Indonesia +JR.1.1 Alias of XBB.1.9.2.5.1.11.1.1, S:L455F (G22927C), from sars-cov-2-variants/lineage-proposals#537 +JR.1.1.1 Alias of XBB.1.9.2.5.1.11.1.1.1, S:K356Q, Thailand, from sars-cov-2-variants/lineage-proposals#1015 +EG.5.1.12 Alias of XBB.1.9.2.5.1.12, T26972C, C28909T +EG.5.1.13 Alias of XBB.1.9.2.5.1.13, C12439T +EG.5.1.14 Alias of XBB.1.9.2.5.1.14, C16017T, C19524T +EG.5.1.15 Alias of XBB.1.9.2.5.1.15, ORF1a:T753I +EG.5.1.16 Alias of XBB.1.9.2.5.1.16, ORF1b:A2431V, from sars-cov-2-variants/lineage-proposals#899 +EG.5.1.17 Alias of XBB.1.9.2.5.1.17, S:L455F (G22927C), China, from sars-cov-2-variants/lineage-proposals#537 +EG.5.1.18 Alias of XBB.1.9.2.5.1.18, ORF1a:G3002S, ORF3a:S220I +EG.5.1.19 Alias of XBB.1.9.2.5.1.19, S:L455F (G22927T), ORF1b:K1383R, ORF3a:M260K, from sars-cov-2-variants/lineage-proposals#537 +EG.5.2 Alias of XBB.1.9.2.5.2, N:L161F +EG.5.2.1 Alias of XBB.1.9.2.5.2.1, S:S704L, USA, from sars-cov-2-variants/lineage-proposals#189 +EG.5.2.2 Alias of XBB.1.9.2.5.2.2, ORF1b:T239I, China +EG.5.2.3 Alias of XBB.1.9.2.5.2.3, S:S704L, S:N1178D, Austria/USA, from sars-cov-2-variants/lineage-proposals#353 +EG.5.2.4 Alias of XBB.1.9.2.5.2.4, S:K679R, on ORF3a:I118V branch, from sars-cov-2-variants/lineage-proposals#770 +EG.6 Alias of XBB.1.9.2.6, C1684T, Israel +EG.6.1 Alias of XBB.1.9.2.6.1, S:F456L (T22928C), Israel/Japan/Canada, from #1950 +EG.6.1.1 Alias of XBB.1.9.2.6.1.1, S:484K, S:L242I, from sars-cov-2-variants/lineage-proposals#546 +EG.6.1.2 Alias of XBB.1.9.2.6.1.2, S:V705I, Israel, from sars-cov-2-variants/lineage-proposals#826 +EG.7 Alias of XBB.1.9.2.7, S:R403K, S:L513F, ORF1a:N2531S, Germany/England, from sars-cov-2-variants/lineage-proposals#56 +EG.8 Alias of XBB.1.9.2.8, ORF1a:S2303F, Europe +EG.9 Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S, from sars-cov-2-variants/lineage-proposals#280 +EG.9.1 Alias of XBB.1.9.2.9.1, S:A344T, C13767T, from sars-cov-2-variants/lineage-proposals#57 +EG.10 Alias of XBB.1.9.2.10, S:A344T, S:R403K, Germany/Austria, from sars-cov-2-variants/lineage-proposals#346 +EG.10.1 Alias of XBB.1.9.2.10.1, S:S494P, S:A701V, from sars-cov-2-variants/lineage-proposals#346 +EG.10.1.1 Alias of XBB.1.9.2.10.1.1, ORF1a:V2703L, ORF1a:V3683I, ORF1b:P1570S +EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia, from sars-cov-2-variants/lineage-proposals#523 +EG.12 Alias of XBB.1.9.2.12, S:E554K, N:R195T, ORF1a:T4159I, Oman/Austria/Brunei/India +EG.13 Alias of XBB.1.9.2.13, ORF1a:K798N +EG.14 Alias of XBB.1.9.2.14, Orf1b:K1383R, from #2274 +XBB.1.9.3 ORF1b:G2005S, ORF1b:G1568C, Europe, from jmcbroome/auto-pango-designation#193 +GD.1 Alias of XBB.1.9.3.1, S:Y453F, Mexico/USA, from #1897 +GD.2 Alias of XBB.1.9.3.2, S:L212S, Philippines +GD.3 Alias of XBB.1.9.3.3, S:F59L, Russia +XBB.1.9.4 28603T, Europe +XBB.1.9.5 ORF1a:D629E, Russia +XBB.1.9.6 S:403K, S:570T, Indonesia +XBB.1.9.7 S:486P, S:478R, ORF1a:P1018T, Indonesia +XBB.1.10 USA/Japan, S:A852V, S:R403K, pre ORF8:8* +XBB.1.11 Indonesia/Malaysia/Singapore/USA, C13968A and G16377A, from #1490 +XBB.1.11.1 Indonesia/Malaysia/Singapore, S:S486P, from #1490 +FP.1 Alias of XBB.1.11.1.1, A6616G, C21642T, following ORF1a:T2016I, Singapore, from #1847 +FP.2 Alias of XBB.1.11.1.2, S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore, from sars-cov-2-variants/lineage-proposals#31 +FP.2.1 Alias of XBB.1.11.1.2.1, S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia, from #2012 +FP.2.1.1 Alias of XBB.1.11.1.2.1.1, S:L452Q, USA/Austria, from sars-cov-2-variants/lineage-proposals#329 +FP.2.1.2 Alias of XBB.1.11.1.2.1.2, S:P521S, Indonesia +FP.3 Alias of XBB.1.11.1.3, S:478R, Indonesia/Malaysia, from #2021 +FP.4 Alias of XBB.1.11.1.4, C3241T, C2536T, Vietnam/South Korea/Japan +XBB.1.12 Spain/Sweden/Germany, S:Y453F, ORF1a:S216F, ORF1a:A2832V +XBB.1.12.1 S:Q613H, S:E1202Q, Argentina/Chile/Spain, from sars-cov-2-variants/lineage-proposals#336 +XBB.1.13 S:S490P, from #1487 +XBB.1.13.1 S:Q564E, S:N856K, Czechia +XBB.1.14 S:G75V, S:E554K +XBB.1.14.1 S:N148T, N:A211S, Russia +XBB.1.15 ORF1a:A540V on ORF8:G8* polytomy, Colombia, USA, Guatemala, and Mexico. Automatically inferred by https://github.com/jmcbroome/autolin. +XBB.1.15.1 S:486P, A19464G, C9803T, Brazil/Chile/USA +XBB.1.16 Defined by S:E180V, S:478R, found in India, USA, Singapore, and Europe, from #1723 +XBB.1.16.1 Defined by S:T547I, from #1772 +FU.1 Alias of XBB.1.16.1.1, T3802C +FU.1.1 Alias of XBB.1.16.1.1.1, S:K1266R +FU.1.1.1 Alias of XBB.1.16.1.1.1.1, S:N74S, USA +FU.2 Alias of XBB.1.16.1.2, C8692T +FU.2.1 Alias of XBB.1.16.1.2.1, S:E619Q, Vietnam +FU.3 Alias of XBB.1.16.1.3, C11665T, India-RJ +FU.3.1 Alias of XBB.1.16.1.3.1, S:G184S +FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C, from #1832 +FU.5 Alias of XBB.1.16.1.5, S:K97E, ORF1a:R542C, Bangladesh, from #2137 +XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India, from #1802 +GY.1 Alias of XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066 +GY.1.1 Alias of XBB.1.16.2.1.1, S:L455F (G22927T), S:F456L (T22928C), China, from sars-cov-2-variants/lineage-proposals#804 +GY.1.1.1 Alias of XBB.1.16.2.1.1.1, S:A475V, Thailand, from sars-cov-2-variants/lineage-proposals#804 +GY.2 Alias of XBB.1.16.2.2, S:T883I +GY.2.1 Alias of XBB.1.16.2.2.1, S:S255F, South Korea +GY.3 Alias of XBB.1.16.2.3, S:M177I, Thailand +GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos, from sars-cov-2-variants/lineage-proposals#345 +GY.5 Alias of XBB.1.16.2.5, G9190C +GY.6 Alias of XBB.1.16.2.6, ORF1a:V1765I, from sars-cov-2-variants/lineage-proposals#308 +GY.7 Alias of XBB.1.16.2.7, ORF1a:G3617C, G5515T, Thailand/Laos +GY.8 Alias of XBB.1.16.2.8, S:F456L (T22928C), C25452T, Japan, from #2148 +GY.9 Alias of XBB.1.16.2.9, S:F186S, Europe +XBB.1.16.3 Defined by A2893C, India +XBB.1.16.4 Defined by S:T678I, India, from #1903 +XBB.1.16.5 Defined by T9991C,C16332T, India, from #1983 +XBB.1.16.6 S:F456L (T22930A), A12397G, USA/Canada/China/Malaysia +JF.1 Alias of XBB.1.16.6.1, S:L455F (G22927T), USA, from #2207 +JF.1.1 Alias of XBB.1.16.6.1.1, ORF1a:S2030L +JF.1.1.1 Alias of XBB.1.16.6.1.1.1, S:A475V, ORF1a:P2005S, Canada, from sars-cov-2-variants/lineage-proposals#643 +JF.1.1.2 Alias of XBB.1.16.6.1.1.2, S:V1264L +JF.2 Alias of XBB.1.16.6.2, S:Q675H, USA/Wales, from sars-cov-2-variants/lineage-proposals#457 +JF.3 Alias of XBB.1.16.6.3, S:Q14H, S:L455F (G22927T), S:S810L, USA/Australia, from sars-cov-2-variants/lineage-proposals#976 +JF.4 Alias of XBB.1.16.6.4, ORF1a:S212L, ORF8:A15V +XBB.1.16.7 S:T732I after T12214C, Singapore/Japan/SouthKorea +XBB.1.16.8 S:T732I after C28531T, India/USA/China/Australia +XBB.1.16.9 S:F456L (T22930G), ORF1a:S2500F, Canada/Sweden/SouthKorea/USA +XBB.1.16.10 N:G25D, from #1984 +XBB.1.16.11 S:P521T, India +XBB.1.16.12 S:Q52H, South Korea +XBB.1.16.13 ORF1a:G519S, ORF1a:G1101D, India +HF.1 Alias of XBB.1.16.13.1, S:K304N, South Korea/Japan, from #2083 +HF.1.1 Alias of XBB.1.16.13.1.1, S:H1101Y, on N:A35T branch, South Korea/USA/Canada, from sars-cov-2-variants/lineage-proposals#521 +HF.1.2 Alias of XBB.1.16.13.1.2, S:A688V, on ORF1a:P1158S branch, USA +XBB.1.16.14 S:L452Q, after A11782G, India/France/Canada, from sars-cov-2-variants/lineage-proposals#329 +XBB.1.16.15 S:K147N, S:P521S, T10756C, T14067C, on C27513T branch, from #2092 +JM.1 Alias of XBB.1.16.15.1, S:Q52H, England/Wales, from sars-cov-2-variants/lineage-proposals#569 +JM.2 Alias of XBB.1.16.15.2, S:R78S, Europe/North America +XBB.1.16.16 S:Q613H, S:S412N, India-GJ/USA/Pakistan, from sars-cov-2-variants/lineage-proposals#54 +XBB.1.16.17 S:E554K, mainly in NZ, from sars-cov-2-variants/lineage-proposals#354 +XBB.1.16.18 ORF7a:T39I, from sars-cov-2-variants/lineage-proposals#276 +XBB.1.16.19 ORF1b:V839I +XBB.1.16.20 ORF7b:S31L +XBB.1.16.21 ORF1a:V4072I +XBB.1.16.22 ORF3a:E242Q, from #1893 +XBB.1.16.23 S:K304Q, India/USA/Japan/Singapore, from #2187 +XBB.1.16.24 S:K182E, S:V551I, S:E554K, on A25410G branch, India, from #2223 +XBB.1.16.25 ORF1a:K510E, C16611T, A29221G +XBB.1.16.26 S:L455F (G22927T), S:F456L (T22928C), China, from sars-cov-2-variants/lineage-proposals#685 +XBB.1.16.27 S:F456L (T22928C), S:E554K, ORF1a:A3889T, France, from #2345 +XBB.1.16.28 S:V1230A, S:Q613H, S:Q675K, Russia, from sars-cov-2-variants/lineage-proposals#1000 +XBB.1.16.29 S:T883I, on C7765T branch, TrinidadTobago, from sars-cov-2-variants/lineage-proposals#524 +XBB.1.16.30 S:E554Q, on C7765T branch, USA/Germany, from sars-cov-2-variants/lineage-proposals#554 +XBB.1.16.31 T9004C, on C7765T branch +XBB.1.16.32 S:S490P, South Africa/USA +KJ.1 Alias of XBB.1.16.32.1, S:T573I, ORF1a:P1659L, South Africa +XBB.1.17 Defined by T27995C and ORF1a:L469F, from #1712 +XBB.1.17.1 Defined by S:215H, S:S486P, from #1712 +GA.1 Alias of XBB.1.17.1.1, ORF1a:G728C +GA.2 Alias of XBB.1.17.1.2, ORF3a:I179F, T6640C, Africa +GA.2.1 Alias of XBB.1.17.1.2.1, S:E554K +GA.2.1.1 Alias of XBB.1.17.1.2.1.1, S:N450D, S:K478R +GA.3 Alias of XBB.1.17.1.3, ORF1b:A186V, Ghana +GA.4 Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria, from sars-cov-2-variants/lineage-proposals#265 +GA.4.1 Alias of XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar, from sars-cov-2-variants/lineage-proposals#661 +GA.4.1.1 Alias of XBB.1.17.1.4.1.1, S:Q675H +GA.4.1.2 Alias of XBB.1.17.1.4.1.2, S:T572I, England +GA.4.1.3 Alias of XBB.1.17.1.4.1.3, S:185insLAG, S:F186D, N:K370N, ORF1a:V1339I, from sars-cov-2-variants/lineage-proposals#968 +GA.4.2 Alias of XBB.1.17.1.4.2, S:K558N, S:G1124S, England/Italy +GA.4.3 Alias of XBB.1.17.1.4.3, S:F186L, S:L585F, Greece/Romania, from sars-cov-2-variants/lineage-proposals#908 +GA.5 Alias of XBB.1.17.1.5, T23797C +GA.6 Alias of XBB.1.17.1.6, ORF1a:I2138V, G8785A, Ghana +GA.6.1 Alias of XBB.1.17.1.6.1, S:478R, A19767G, C29642T +GA.7 Alias of XBB.1.17.1.7, ORF1a:T1429I, Cote d'Ivoire +GA.7.1 Alias of XBB.1.17.1.7.1, S:P521S, S:N148T, S:S494P, S:Q218R, from sars-cov-2-variants/lineage-proposals#755 +GA.7.2 Alias of XBB.1.17.1.7.2, S:H245Y +GA.8 Alias of XBB.1.17.1.8, C3619T, C27389T, Congo +GA.8.1 Alias of XBB.1.17.1.8.1, S:K182E, S:S494P, S:E554K, France/Belgium +GA.9 Alias of XBB.1.17.1.9, ORF3a:K67N,T7534C,C29719A +GA.10 Alias of XBB.1.17.1.10, ORF1a:V4520I, Mali +GA.10.1 Alias of XBB.1.17.1.10.1, S:L455F (G22927T), S:F456L (T22928C), S:K478R, ORF1a:A776V, ORF1a:F1214S, ORF1b:K1947R, from sars-cov-2-variants/lineage-proposals#919 +XBB.1.17.2 Defined by ORF1a:A698S, Russia, from #1712 +XBB.1.18 Defined by A8001G, Brazil +XBB.1.18.1 Defined by S:F486P, Brazil +FE.1 Alias of XBB.1.18.1.1, S:F456L (T22928C), Brazil/Chile +FE.1.1 Alias of XBB.1.18.1.1.1, ORF8:S67F, T4579A +FE.1.1.1 Alias of XBB.1.18.1.1.1.1, ORF1a:T999I, North America +HE.1 Alias of XBB.1.18.1.1.1.1.1, S:V622I, ORF8:A55V, USA/Puerto Rico, from #2067 +HE.2 Alias of XBB.1.18.1.1.1.1.2, S:H1058Y, USA +FE.1.1.2 Alias of XBB.1.18.1.1.1.2, S:K1086R, Brazil/USA +FE.1.1.3 Alias of XBB.1.18.1.1.1.3, A24775G, on G28371T (N:G33V, ORF9b:V30L) branch, China +FE.1.1.4 Alias of XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil +FE.1.1.5 Alias of XBB.1.18.1.1.1.5, S:E554K, Brazil, from sars-cov-2-variants/lineage-proposals#556 +FE.1.2 Alias of XBB.1.18.1.1.2, A5488G +XBB.1.19 Defined by S:486P, A10042G, T21363C, on C541T, pre ORF8:8* branch, Pakistan, from #1680 +XBB.1.19.1 Defined by S:E554K, Pakistan, from #1765 +GW.1 Alias of XBB.1.19.1.1, ORF1a:D264N, N:M322V, China, from sars-cov-2-variants/lineage-proposals#157 +GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L (T22928C), China/Japan/Singapore, from sars-cov-2-variants/lineage-proposals#355 +GW.2 Alias of XBB.1.19.1.2, S:D936G, USA +GW.3 Alias of XBB.1.19.1.3, ORF1a:S100N, ORF1a:N3537S +GW.4 Alias of XBB.1.19.1.4, ORF1a:M3280I +GW.5 Alias of XBB.1.19.1.5, S:L455F (G22927T), S:F456L (T22928C), S:K478I, Pakistan, from #2142 +GW.5.1 Alias of XBB.1.19.1.5.1, ORF3a:W149C, Pakistan +GW.5.1.1 Alias of XBB.1.19.1.5.1.1, S:A475V, S:F79S, Pakistan, from #2277 +KE.1 Alias of XBB.1.19.1.5.1.1.1, S:F186S, England/Wales +KE.2 Alias of XBB.1.19.1.5.1.1.2, S:S704L, UK, from sars-cov-2-variants/lineage-proposals#945 +KE.3 Alias of XBB.1.19.1.5.1.1.3, ORF1a:L3641S, ORF1a:T5131I, ORF7a:M1K, UK +GW.5.2 Alias of XBB.1.19.1.5.2, N:T379I +GW.5.3 Alias of XBB.1.19.1.5.3, T20310C, C28519T, from sars-cov-2-variants/lineage-proposals#815 +GW.5.3.1 Alias of XBB.1.19.1.5.3.1, S:A475V, S:G184A, from sars-cov-2-variants/lineage-proposals#815 +XBB.1.19.2 Defined by S:P521S, Pakistan, from sars-cov-2-variants/lineage-proposals#233 +XBB.1.20 Defined by ORF3a:A72V, ORF1a:P4312T on C541T, pre ORF8:8* branch, Malaysia +XBB.1.21 Defined by S:486A, ORF1a:K1247R, Turkey, from #1646 +XBB.1.22 Defined by S:486P, on ORF9b:I5T branch, from #1704 +XBB.1.22.1 Defined by S:Y200C, from #1704 +FY.1 Alias of XBB.1.22.1.1, Defined by ORF1b:D1782N +FY.1.1 Alias of XBB.1.22.1.1.1, S:A83S, Malaysia/Japan +FY.1.2 Alias of XBB.1.22.1.1.2, S:T572I, ORF1b:P218L, Europe +FY.1.2.1 Alias of XBB.1.22.1.1.2.1, S:W64L, from sars-cov-2-variants/lineage-proposals#863 +FY.1.2.2 Alias of XBB.1.22.1.1.2.2, S:V1129I +FY.1.2.3 Alias of XBB.1.22.1.1.2.3, S:D215H +FY.1.3 Alias of XBB.1.22.1.1.3, S:E583D, South Korea +FY.1.4 Alias of XBB.1.22.1.1.4, S:478R, S:D1084G, USA, from sars-cov-2-variants/lineage-proposals#165 +FY.1.4.1 Alias of XBB.1.22.1.1.4.1, S:I569T, S:N185S, USA +FY.2 Alias of XBB.1.22.1.2, S:I197T, ORF1b:S997P, Indonesia, from #1859 +FY.2.1 Alias of XBB.1.22.1.2.1, S:A684V, from #2080 +FY.3 Alias of XBB.1.22.1.3, ORF1a:E750K, C23191T, China +FY.3.1 Alias of XBB.1.22.1.3.1, S:I210T, China, from #2009 +FY.3.2 Alias of XBB.1.22.1.3.2, ORF1a:E3764G, China, from #2000 +FY.3.3 Alias of XBB.1.22.1.3.3, ORF3a:V48F, China +FY.4 Alias of XBB.1.22.1.4, S:Y451H, A8374G, C25517T, Kenya, from #1979 +FY.4.1 Alias of XBB.1.22.1.4.1, S:S494P, Kenya, from #1979 +FY.4.1.1 Alias of XBB.1.22.1.4.1.1, S:S704L, from sars-cov-2-variants/lineage-proposals#302 +FY.4.1.2 Alias of XBB.1.22.1.4.1.2, ORF1a:S2926F, Kenya +FY.4.2 Alias of XBB.1.22.1.4.2, ORF1a:Y2171F, ORF1b:V2287I, Kenya/USA/Japan, from sars-cov-2-variants/lineage-proposals#487 +FY.5 Alias of XBB.1.22.1.5, S:478R, Indonesia, from #1965 +FY.5.1 Alias of XBB.1.22.1.5.1, S:T572I, from sars-cov-2-variants/lineage-proposals#929 +FY.5.1.1 Alias of XBB.1.22.1.5.1.1, S:M153I, S:F186S, S:S247N, from sars-cov-2-variants/lineage-proposals#790 +FY.5.2 Alias of XBB.1.22.1.5.2, S:L176F, Indonesia, on A6019G branch, from sars-cov-2-variants/lineage-proposals#267 +FY.5.3 Alias of XBB.1.22.1.5.3, S:A222V, Singapore/Japan, on A6019G branch +FY.5.4 Alias of XBB.1.22.1.5.4, S:T572I, ORF1a:D3009N, ORF1a:Y4077C on A6019G branch, from sars-cov-2-variants/lineage-proposals#929 +FY.5.5 Alias of XBB.1.22.1.5.5, ORF1a:M2796I +FY.5.5.1 Alias of XBB.1.22.1.5.5.1, S:T572I, from sars-cov-2-variants/lineage-proposals#929 +FY.6 Alias of XBB.1.22.1.6, ORF1a:A591V +FY.6.1 Alias of XBB.1.22.1.6.1, S:S939F, Japan +FY.6.2 Alias of XBB.1.22.1.6.2, ORF1a:A3143V, ins_S:216:SLQGN, Japan, from sars-cov-2-variants/lineage-proposals#637 +FY.7 Alias of XBB.1.22.1.7, S:G769A, S:D1168E, from sars-cov-2-variants/lineage-proposals#257 +FY.8 Alias of XBB.1.22.1.8, S:T572I, from sars-cov-2-variants/lineage-proposals#635 +FY.8.1 Alias of XBB.1.22.1.8.1, S:478R, T4579A, from sars-cov-2-variants/lineage-proposals#1002 +FY.8.1.1 Alias of XBB.1.22.1.8.1.1, S:P521Q, ORF1b:V1149L, from sars-cov-2-variants/lineage-proposals#1002 +FY.9 Alias of XBB.1.22.1.9, S:Q675K, ORF1a:D220E, ORF1a:C667Y, Indonesia from #2053 +XBB.1.22.2 Defined by ORF1a:L3829F, C15237T +HU.1 Alias of XBB.1.22.2.1, S:K529N, France, from #2136 +HU.1.1 Alias of XBB.1.22.2.1.1, S:E471Q, S:Y28H, France/USA, from #2136 +HU.2 Alias of XBB.1.22.2.2, S:T76I, ORF1a:R24H, ORF1b:A1428V, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#364 +XBB.1.22.3 Defined by ORF1a:P3504L, ORF1b:H1838N, Japan +XBB.1.23 Defined by E:S68F, on ORF9b:I5T branch, South East Asia +XBB.1.24 Defined by S:F486P, on T13704C branch, South East Asia, from #1654 +XBB.1.24.1 S:L518Q, Singapore +XBB.1.24.2 S:R158S, after ORF1a:K261N, N:A35T, Singapore/Malaysia +XBB.1.24.3 S:S256L, after ORF1a:K261N, Malaysia/Japan +XBB.1.25 Defined by C673T, G487T, on ORF9b:I5T branch +XBB.1.26 Defined by T10663C, on ORF9b:I5T branch, Canada +XBB.1.27 Defined by S:478R, S:A890V, Mexico/USA/India, from #1654 +XBB.1.28 Defined by S:403K, Europe, from #1757 +XBB.1.28.1 Defined by S:356T, Indonesia, global +FW.1 Alias of XBB.1.28.1.1, S:A701V, Indonesia, Europe +FW.1.1 Alias of XBB.1.28.1.1.1, S:N148T, UK +FW.1.1.1 Alias of XBB.1.28.1.1.1.1, S:A684T, ORF1a:S2285F, ORF1a:K3353R, UK, from sars-cov-2-variants/lineage-proposals#1242 +FW.2 Alias of XBB.1.28.1.2, ORF1a:G2258C, France +FW.3 Alias of XBB.1.28.1.3, ORF1a:D2627N +XBB.1.29 Defined by ORF1a:L3829F, S:A292S, Europe +XBB.1.30 Defined by ORF1b:K2557R, South East Asia +XBB.1.31 Defined by S:453F and S:478R, Indonesia/Singapore, from #1837 +XBB.1.31.1 S:E554K, Indonesia, from sars-cov-2-variants/lineage-proposals#141 +XBB.1.31.2 ORF1a:A1049V, Indonesia +XBB.1.32 Defined by ORF1a:E148D, Philippines, from #1827 +XBB.1.32.1 S:Y453F, ORF1a:L642F, ORF1b:L2497I, Philippines/Thailand, from #1908 +XBB.1.33 Defined by S:A376Trev, on ORF1b:L1061I, A27965G, pre ORF8:8* branch, found mainly in Italy, from #1879 +XBB.1.34 S:486P, S:681R, N:A50V, Uganda/Sudan, from #1621 +XBB.1.34.1 S:E554K, ORF1b:P970L +XBB.1.34.2 S:K182I, ORF8:C90F, ORF1a:G989C +HB.1 Alias of XBB.1.34.2.1, S:F456L (T22928C), USA/China/Canada, from sars-cov-2-variants/lineage-proposals#217 +XBB.1.35 ORF1a:V89A, Indonesia +XBB.1.36 Defined by S:S490P, found mainly in Malaysia, Indonesia and Singapore, from #1781 +XBB.1.37 Defined by A5371G, Indonesia/Russia, from #1929 +XBB.1.37.1 Defined by S:486P, A1846G, G7459T, T27285C, Russia/South Korea, from #1929 +XBB.1.38 Defined by S:T732I, Russia +XBB.1.38.1 S:T883I, Russia +XBB.1.39 ORF1a:V2866M, Singapore/Malaysia +XBB.1.40 S:Y453F, ORF1a:G519S, ORF1a:L2609F, ORF3a:P104S, Malaysia +XBB.1.41 S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997 +XBB.1.41.1 S:478R, Africa, from sars-cov-2-variants/lineage-proposals#150 +JC.1 Alias of XBB.1.41.1.1, S:K77R, Japan/Hawaii +JC.2 Alias of XBB.1.41.1.2, S:D339R, ORF1a:V1056L, Greece, from sars-cov-2-variants/lineage-proposals#961 +JC.3 Alias of XBB.1.41.1.3, S:N703I, South Africa +JC.4 Alias of XBB.1.41.1.4, S:N148S +JC.5 Alias of XBB.1.41.1.5, ORF1a:P1220L, N:H300Y, from sars-cov-2-variants/lineage-proposals#629 +JC.5.1 Alias of XBB.1.41.1.5.1, S:Q173K, USA +JC.6 Alias of XBB.1.41.1.6, S:I1227V, South Africa +XBB.1.41.2 S:S494P, USA, from sars-cov-2-variants/lineage-proposals#389 +XBB.1.41.3 C17850T, C25276T, C29416G, Africa +JW.1 Alias of XBB.1.41.3.1, S:K478R, ORF1a:L397F, South Africa/DRC +JW.1.1 Alias of XBB.1.41.3.1.1, S:Q14K, South Africa +XBB.1.42 S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China, from #1954 +XBB.1.42.1 S:478R, from sars-cov-2-variants/lineage-proposals#198 +XBB.1.42.2 C6040T, G9049A +HL.1 Alias of XBB.1.42.2.1, S:E583D, from sars-cov-2-variants/lineage-proposals#352 +HL.2 Alias of XBB.1.42.2.2, S:S929N, China +XBB.1.43 G11071A, Indonesia, from #2015 +XBB.1.43.1 S:486P, ORF1a:A2621V, A20713C, from #2015 +XBB.1.44 S:T747I, Russia +XBB.1.44.1 S:486P, ORF3a:S195F, Russia/China, from #2043 +XBB.1.45 T21000C, USA/Singapore/Malaysia +XBB.1.45.1 S:486P, A3139G, A19137G, C28291T, USA/Portugal, from #1937 +XBB.1.46 ORF1a:C1114F, Singapore/Malaysia +XBB.1.47 ORF1a:T1761I, ORF1a:C2180Y, ORF1a:I2854V, Philippines/Singapore/Japan +XBB.1.47.1 S:486P, S:A260V, S:V1122G, Japan/USA/Australia/Germany +XBB.1.48 S:L455F (G22927T), S:F456L (T22928C), C2509T, on C541T, pre ORF8:8* branch, Pakistan, from #1681 +XBB.1.49 S:346S, S:486P, on ORF1b:L1061I, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia, from sars-cov-2-variants/lineage-proposals#208 +XBB.2 Defined by S:D253G, from #1173 +XBB.2.1 Defined by S:N764R (C23853G), two step mutation on top of C23854A (S:N764K defining of all Omicrons) +XBB.2.2 Defined by S:Q613H +XBB.2.3 Defined by S:P521S and S:S486P, India/Indonesia/Singapore/USA, from #1603 and #1535 +XBB.2.3.1 S:D80Y, England/Sweden/India, from #1775 +XBB.2.3.2 S:G184V, ORF1a:R2159W, India, from #1776 +HH.1 Alias of XBB.2.3.2.1, ORF1a:T2977I, T20697C +HH.1.1 Alias of XBB.2.3.2.1.1, S:G181A, from sars-cov-2-variants/lineage-proposals#183 +HH.2 Alias of XBB.2.3.2.2, ORF1a:D48Y +HH.2.1 Alias of XBB.2.3.2.2.1, S:K478R, England/France, from sars-cov-2-variants/lineage-proposals#236 +HH.3 Alias of XBB.2.3.2.3, S:D1260Y, Japan +HH.4 Alias of XBB.2.3.2.4, S:A845S, India +HH.5 Alias of XBB.2.3.2.5, S:K147N, India, from sars-cov-2-variants/lineage-proposals#438 +HH.6 Alias of XBB.2.3.2.6, S:K478R, ORF1a:D935E, India, from sars-cov-2-variants/lineage-proposals#236 +HH.7 Alias of XBB.2.3.2.7, ORF1a:T1788M, India from #1962 +HH.8 Alias of XBB.2.3.2.8, S:Q607R +HH.8.1 Alias of XBB.2.3.2.8.1, S:K478R, from sars-cov-2-variants/lineage-proposals#236 +XBB.2.3.3 S:182N, India/USA, from #1810 +GJ.1 Alias of XBB.2.3.3.1, found mainly in China and USA, from #2005 +GJ.1.1 Alias of XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I, from sars-cov-2-variants/lineage-proposals#109 +GJ.1.2 Alias of XBB.2.3.3.1.2, ORF1b:V1110I, from #2059 +GJ.1.2.1 Alias of XBB.2.3.3.1.2.1, S:N450D, Singapore/Thailand/South Korea/USA/Spain, from sars-cov-2-variants/lineage-proposals#446 +JE.1 Alias of XBB.2.3.3.1.2.1.1, S:478R, Singapore/SouthKorea/USA, from sars-cov-2-variants/lineage-proposals#597 +JE.1.1 Alias of XBB.2.3.3.1.2.1.1.1, S:Q52R, from sars-cov-2-variants/lineage-proposals#827 +JE.1.1.1 Alias of XBB.2.3.3.1.2.1.1.1.1, S:V1122A, from #2390 +KH.1 Alias of XBB.2.3.3.1.2.1.1.1.1.1, S:E554K, on N:L13F, ORF1a:R135S (reversion) branch, from #2390 +GJ.1.2.2 Alias of XBB.2.3.3.1.2.2, S:478R, Europe/USA/Australia +GJ.1.2.3 Alias of XBB.2.3.3.1.2.3, S:T76I, Japan, on ORF1b:S997P branch +GJ.1.2.4 Alias of XBB.2.3.3.1.2.4, S:S255F, on ORF1a:H919Y branch, Japan/USA/South Korea +GJ.1.2.5 Alias of XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA，on ORF1b:S997P branch, from sars-cov-2-variants/lineage-proposals#628 +GJ.1.2.6 Alias of XBB.2.3.3.1.2.6, S:478R, on ORF1b:S997P branch, from sars-cov-2-variants/lineage-proposals#726 +GJ.1.2.7 Alias of XBB.2.3.3.1.2.7, S:478R, T6511C, on ORF1a:H919Y branch, from sars-cov-2-variants/lineage-proposals#726 +GJ.1.2.8 Alias of XBB.2.3.3.1.2.8, S:T747I, USA +GJ.2 Alias of XBB.2.3.3.2, S:I1114S, Europe +GJ.3 Alias of XBB.2.3.3.3, ORF1a:P971S, ORF1b:V2371L +GJ.4 Alias of XBB.2.3.3.4, S:M153I, from #1902 +GJ.5 Alias of XBB.2.3.3.5, S:478R, A11794G, C13138T, from sars-cov-2-variants/lineage-proposals#429 +GJ.5.1 Alias of XBB.2.3.3.5.1, S:S255F, ORF1a:A540V, ORF1a:A3963V, from sars-cov-2-variants/lineage-proposals#429 +GJ.6 Alias of XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India, from sars-cov-2-variants/lineage-proposals#675 +GJ.7 Alias of XBB.2.3.3.7, S:E183K, Australia/NewZealand, from sars-cov-2-variants/lineage-proposals#439 +XBB.2.3.4 S:478Q, India, from #1822 +GZ.1 Alias of XBB.2.3.4.1, S:F186L, India-GJ +XBB.2.3.5 S:K478N, found mainly in USA and India, from #1846 +XBB.2.3.6 N:T166I, mainly Singapore +GM.1 Alias of XBB.2.3.6.1, S:P621S, Singapore +GM.2 Alias of XBB.2.3.6.2, S:G181R, Singapore +GM.3 Alias of XBB.2.3.6.3, ORF1a:R4017K, Singapore +GM.3.1 Alias of XBB.2.3.6.3.1, S:N388K, Japan, from sars-cov-2-variants/lineage-proposals#450 +XBB.2.3.7 ORF1a:T4087I +XBB.2.3.8 C2013T, T16389C, S:478R, Singapore/SouthKorea, from #1866 +HG.1 Alias of XBB.2.3.8.1, S:S98F, South Korea +HG.1.1 Alias of XBB.2.3.8.1.1, S:A1190S, South Korea +HG.2 Alias of XBB.2.3.8.2, S:T259I, South Korea/USA, from sars-cov-2-variants/lineage-proposals#652 +HG.3 Alias of XBB.2.3.8.3, S:S255F, South Korea +XBB.2.3.9 S:S98F, C18744T, C19200T, India +XBB.2.3.10 T5947C, India +GE.1 Alias of XBB.2.3.10.1, S:K478R, from #1866 +GE.1.1 Alias of XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore, from sars-cov-2-variants/lineage-proposals#367 +GE.1.2 Alias of XBB.2.3.10.1.2, S:N148T, Kenya, from sars-cov-2-variants/lineage-proposals#200 +GE.1.2.1 Alias of XBB.2.3.10.1.2.1, S:478T, S:A376S, ORF7a-ORF8 possibly completely deleted, from sars-cov-2-variants/lineage-proposals#1103 +KT.1 Alias of XBB.2.3.10.1.2.1.1, S:K77R, US/UK +KT.1.1 Alias of XBB.2.3.10.1.2.1.1.1, C683T, G15957A, USA +KT.1.2 Alias of XBB.2.3.10.1.2.1.1.2, ORF1b:N2328S, C583T +GE.1.2.2 Alias of XBB.2.3.10.1.2.2, S:S408N, ORF1b:A517V, ORF1b:D1899E, ORF7a-ORF8 possibly completed deleted, Kenya, from sars-cov-2-variants/lineage-proposals#1340 +GE.1.3 Alias of XBB.2.3.10.1.3, S:T732I, from sars-cov-2-variants/lineage-proposals#102 +GE.1.4 Alias of XBB.2.3.10.1.4, ORF1a:P3359S +GE.1.5 Alias of XBB.2.3.10.1.5, G6352A, C11653T, T16242A +GE.1.6 Alias of XBB.2.3.10.1.6, S:L118I +XBB.2.3.11 S:K478R, India, from #1866 +GS.1 Alias of XBB.2.3.11.1, S:213D, C4582T, C25075T, Australia, from #2023 +GS.2 Alias of XBB.2.3.11.2, S:T470N, Singapore/Brunei, from sars-cov-2-variants/lineage-proposals#93 +GS.3 Alias of XBB.2.3.11.3, S:R190S, USA/UK, from sars-cov-2-variants/lineage-proposals#669 +GS.4 Alias of XBB.2.3.11.4, M:A104V, ORF1a:A181T, France, from sars-cov-2-variants/lineage-proposals#668 +GS.4.1 Alias of XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France, from sars-cov-2-variants/lineage-proposals#668 +GS.4.1.1 Alias of XBB.2.3.11.4.1.1, S:P561S, France +GS.5 Alias of XBB.2.3.11.5, M:A104V, S:Q218H, from sars-cov-2-variants/lineage-proposals#768 +GS.6 Alias of XBB.2.3.11.6, S:A845S, Wales +GS.7 Alias of XBB.2.3.11.7, ORF1a:L204I, C14925T +GS.7.1 Alias of XBB.2.3.11.7.1, S:E180Q, Tunisia +GS.8 Alias of XBB.2.3.11.8, ORF3a:I179V, Vietnam +XBB.2.3.12 S:S494P, from #2029 +JU.1 Alias of XBB.2.3.12.1, S:N148T, S:Q218R, S:N450D, Georgia/Russia +XBB.2.3.13 ORF1a:T1822I, Spain +JA.1 Alias of XBB.2.3.13.1, S:F456L (T22928C), Spain/England/France, from sars-cov-2-variants/lineage-proposals#240 +XBB.2.3.14 ORF1a:Q998H +XBB.2.3.15 ORF1a:I4308V, from sars-cov-2-variants/lineage-proposals#722 +JS.1 Alias of XBB.2.3.15.1, S:S256T +JS.2 Alias of XBB.2.3.15.2, S:T323I, from sars-cov-2-variants/lineage-proposals#722 +XBB.2.3.16 S:K478N, USA +XBB.2.3.17 S:N450D, USA +XBB.2.3.18 S:F456L (T22930A), S:N450D, S:1231A, India, from sars-cov-2-variants/lineage-proposals#738 +XBB.2.3.19 S:G184V, ORF1a:P1786L, India +JY.1 Alias of XBB.2.3.19.1, S:E654K, S:K478T (rev), India, from sars-cov-2-variants/lineage-proposals#731 +JY.1.1 Alias of XBB.2.3.19.1.1, S:T1117K +XBB.2.3.20 N:A267S, S:210del, Bangladesh, from sars-cov-2-variants/lineage-proposals#328 +XBB.2.3.21 S:T883I, ORF1a:D3042N, 670T reversion, Japan, from sars-cov-2-variants/lineage-proposals#281 +XBB.2.3.22 S:S937T, ORF8:K94T, Romania/Bulgaria +XBB.2.4 Defined by S:S486P, Spain/Denmark/Germany, from #1603 and #1518 +XBB.2.5 S:Q613H, from jmcbroome/auto-pango-designation#193 +XBB.2.6 Mostly Peru, C5144T, T5731A +XBB.2.6.1 S:P521S, Peru, from #1869 +GH.1 Alias of XBB.2.6.1.1, ORF9b:P51Q, T6895C, T9148C, A15192C, Peru, from #1869 +XBB.2.6.2 S:T19L, Peru +XBB.2.6.3 S:T883I, C25587T, Peru +XBB.2.7 ORF1a:R3662H, parent of lineage proposed in #1725 +XBB.2.7.1 S:Y453F, S:K478Q, Singapore, from #1725 +XBB.2.8 C6968T, Brunei +XBB.2.9 Defined by ORF1a:V2027I and S:F486P, found mainly in Russia, from #1877 +XBB.2.10 S:Q52H, Latvia/Poland +XBB.2.11 C18129T +XBB.2.11.1 C4084T, C9559T, T16521C, USA +XBB.2.12 S:Q613H (G23401C), C4090T, T24194C, India +XBB.3 ORF1b:I1988V, on ORF1a:D82G branch +XBB.3.1 S:Q677R, after T1993C, India-TN/Singapore, from #1241 +XBB.3.2 S:M177T +XBB.3.3 S:V1122L, after T1993C, USA +XBB.3.4 S:E990D +XBB.3.5 ORF1a:T4083M, Mozambique, from #1778 +XBB.4 S:K444R, on ORF1a:D82G branch, from #1239 +XBB.4.1 England/Austria, S:L5F, S:T470N +XBB.5 S:A653V, after G5518A, on ORF1a:D82G branch, India-TN, Singapore, Australia +XBB.6 C14178T, on ORF1a:D82G branch, USA/India/England +XBB.6.1 S:F486P, USA, from #1459 +XBB.7 S:Q613H, after G5518A, on ORF1a:D82G branch, Malaysia +XBB.8 T14574C, on ORF1a:D82G branch, India/Malaysia/Brunei +XBB.8.1 S:486P, ORF1a:K634N, ORF1a:K3353R, Malaysia +XBB.8.2 S:486P, ORF1a:A2529V, Reunion/Mayotte/Mauritius, from #1995 +XBB.9 N:T49I, on ORF1a:D82G branch, Philippines +XBC Recombinant lineage of BA.2 and B.1.617.2(21I), predominantly in Philippines, from #1100 +XBC.1 Mostly Philippines, South Korea, USA, Singapore, defined by S:L452M, from #1130 +XBC.1.1 Mostly Australia, ORF1a:I3619T, ORF8:V114L +XBC.1.1.1 Australia, S:G476S +XBC.1.1.2 ORF7b:L32F, Australia +XBC.1.2 Philippines/Netherlands/Denmark, T11269C +XBC.1.2.1 Denmark, ORF1b:T132I +XBC.1.3 Philippines/Australia, C25614T +XBC.1.3.1 ORF1a:Q455K, ORF1a:T4174I, ORF1a:V2061A, ORF1b:S759N, Australia/New Zealand, from sars-cov-2-variants/lineage-proposals#542 +KD.1 Alias of XBC.1.3.1.1, S:R346S, Australia, from sars-cov-2-variants/lineage-proposals#673 +KD.2 Alias of XBC.1.3.1.2, ORF1a:M3661L, ORF1a:M3934I, Australia/New Zealand +KD.3 Alias of XBC.1.3.1.3, C10519T, C19524T, New Zealand +KD.4 Alias of XBC.1.3.1.4, ORF1a:K394R, ORF1a:L730F, ORF1a:T965I, Australia/Japan +XBC.1.4 Australia, S:G184S, from #1622 +XBC.1.5 Philippines/South Korea/Japan, ORF1a:T708I after A10042C, from #1671 +XBC.1.6 S:346S, S:M452R, found in Australia, from #1755 +XBC.1.6.1 ORF8:P36L, Australia +GT.1 Alias of XBC.1.6.1.1, S:I105V, C28333T, Australia +XBC.1.6.2 ORF1a:D827N, Australia +XBC.1.6.3 N:A173V, Australia +HW.1 Alias of XBC.1.6.3.1, ORF1a:T1597I, ORF1a:A2123V, Australia, from sars-cov-2-variants/lineage-proposals#71 +HW.1.1 Alias of XBC.1.6.3.1.1, S:N460H, T16242A, C22120T, USA/Ireland, from sars-cov-2-variants/lineage-proposals#452 +HW.1.2 Alias of XBC.1.6.3.1.2, G15957A, Australia +HW.1.3 Alias of XBC.1.6.3.1.3, N:T391I, Australia +XBC.1.6.4 ORF1a:V1117I, T20286C, Australia +XBC.1.6.5 ORF7a:Q90*, C1594T, C15601T, Australia, from sars-cov-2-variants/lineage-proposals#479 +XBC.1.6.6 T8707C, C26735T, Australia +JT.1 Alias of XBC.1.6.6.1, S:V445A, from sars-cov-2-variants/lineage-proposals#203 +XBC.1.7 S:478R, S:444T, Philippines/Australia/Hong Kong, from sars-cov-2-variants/lineage-proposals#110 +XBC.1.7.1 S:N185S, Philiippines +XBC.1.7.2 S:T299I, Australia +XBC.2 Mostly Philippines, defined by S:K97R +XBC.2.1 S:K444T, Australia, from #1538 +XBD Recombinant lineage of BA.2.75.2 and BF.5, India and world, from #1137 +XBE Recombinant lineage of BA.5.2 and BE.4.1, predominantly in USA and England, from #1246 +XBF Recombinant lineage of BA.5.2* and CJ.1, Australia, from #1259 +XBF.1 Australia/England, S:S939F +XBF.1.1 England, S:P621S, from #1651 +XBF.2 Australia, ORF8:V62A +XBF.3 Australia, ORF1a:V274I +XBF.4 Europe, ORF1a:H417Y, from jmcbroome/auto-pango-designation#193 +XBF.5 Australia, C2455T +XBF.6 Australia, ORF1a:V3986A +XBF.7 Global, N:T379I (not on ORF1a:K120N branch) +XBF.7.1 S:T323I +XBF.8 Australia, T9931C, C12970T +XBF.8.1 Australia, S:P621S, from #1651 +XBF.9 Europe, ORF1b:S1003G +XBF.10 Australia, S:M153I +XBG Recombinant lineage of BA.2.76 and BA.5.2, predominantly in UK, from #896 +XBH Recombinant lineage of BA.2.3.17 and BA.2.75.2, predominantly in Brunei, from #1229 +XBJ Recombinant lineage of BA.2.3.20 and BA.5.2, possibly Philippines, from #1268 +XBJ.1 A16011G, from #1591 +XBJ.1.1 S:G485D, N:R195K, from #1591 +XBJ.2 C22006T, Europe +XBJ.3 ORF1a:K2928N, Europe +XBJ.4 S:G485D, Japan/Thailand +XBK Recombinant lineage of BA.5.2 and CJ.1, Denmark/Europe, from #1418 +XBK.1 S:P1162S, from #1551 and jmcbroome/auto-pango-designation#193 +XBL Recombinant lineage of XBB.1.5.57-BA.2.75* (short segment from ~1k-~5k)-XBB.1.5.57, Malaysia, from #1532 +XBL.1 S:V635I, T2461C +XBL.2 A1393G +XBL.3 C11824T, G14400T +XBL.3.1 S:I726V, C10252T, G29702A, Singapore/South Korea/Thailand, from sars-cov-2-variants/lineage-proposals#44 +XBM Recombinant lineage of BA.2.76 and BF.3, India/USA/Canada, from #1441 +XBN Recombinant lineage of BA.2.75 and XBB.3, mainly found in USA, from #1296 +XBP Recombinant lineage of BA.2.75* and BQ.1*, predominantly in England and Canada, from #1393 +XBQ Recombinant lineage of BA.5.2 and CJ.1, defined by ORF1b:M454I, England and Canada, from #1440 and autolin +XBR Recombinant lineage of BA.2.75* and BQ.1 (with S:R346T), England, Canada, USA, from #1637 +XBS Recombinant lineage of BA.2.75* and BQ.1 (with S:R346T), England, from #1567 +XBT Recombinant lineage of BA.5.2.34, BA.2.75, BA.5.2.34, Germany, from #1576 +XBU Recombinant lineage of BA.2.75.3, BQ.1, BA.2.75.3, from #1425 +XBV Recombinant lineage of CR.1, XBB.1, from #1460 +XBW Recombinant lineage of XBB.1.5, BQ.1.14, from #1505 +XBY Recombinant lineage of BR.2.1, XBF, from #1669 +XBZ Recombinant lineage of BA.5.2* and EF.1.3, predominantly in Denmark, Germany and Austria, from #1666 +XCA Recombinant lineage of BA.2.75* and BQ.1*, predominantly in UK, from #1752 +XCB Recombinant lineage of BF.31.1 and BQ.1.10*, predominantly in Chile, from #1668 +XCC Recombinant lineage of CH.1.1.1 and XBB.1.9.1, predominantly Pakistan, Australia, from #1876 +XCD Recombinant lineage of XBB.1* and BQ.1.1.25*, with S:R214H, S:478I, Indonesia, from #2042 +XCE Recombinant lineage of BQ.1* and FY.1 (XBB.1.22.1.1), Indonesia, South Korea, France, from sars-cov-2-variants/lineage-proposals#123 +XCF Recombinant lineage of XBB* and FE.1 (XBB.1.18.1.1), possibly South America, from sars-cov-2-variants/lineage-proposals#2 +XCF.1 S:F157L, USA, from sars-cov-2-variants/lineage-proposals#274 +XCF.2 S:S929I, Canada +XCF.3 S:R78M +XCG Recombinant lineage of BA.5.2* and XBB.1, Mexico +XCH Recombinant lineage of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173 +XCH.1 S:T573I, from #2173 +XCJ Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from sars-cov-2-variants/lineage-proposals#609 +XCK Recombinant lineage of FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215 +XCL Recombinant lineage of XBB (possibly XBB.1.5.68 or FY.4) from 5' up to 12468-15754, GK.2.1 onwards, Europe, from #2227 +XCM Recombinant lineage of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), Spain/Italy, from sars-cov-2-variants/lineage-proposals#674 +XCN Recombinant lineage of FR.1.1 and EG.5.1.1 (breakpoint between 22630-22663), China (Anhui/Shanghai), from sars-cov-2-variants/lineage-proposals#842 +XCP Recombinant lineage of EG.5.1.10 and JD.1.1 (breakpoint between 14190-14633), France/Denmark/England, from sars-cov-2-variants/lineage-proposals#772 +XCQ Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289 +XCR Recombinant lineage of GK.1.1.1 and FU.1.1.1 (breakpoint between 23674-24372), USA, from #2323 +XCS Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311 +XCT Recombinant lineage of JG.4, DV.7.1, JG.4 (breakpoints at 18430-19885 and 25960-27506), Europe, from sars-cov-2-variants/lineage-proposals#811 +XCT.1 S:S704L, from #2358 +XCU Recombinant lineage of XBC.1.7.1 and FL.23.2.1 (breakpoint 22329-22577), Philippines, from sars-cov-2-variants/lineage-proposals#935 +XCV Recombinant lineage of XBB.1.16.19, EG.5.1.3, XBB.1.16.19 (breakpoints 9694-11749 and 22996-27064), USA/Canada, from #2210 +XCW Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), India/USA from #2260 +XCY Recombinant lineage of EG.5.1.3, GK.4 (or GK.3.1) (breakpoint 21719-22569), France, from sars-cov-2-variants/lineage-proposals#887 +XCZ Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England, from sars-cov-2-variants/lineage-proposals#839 +XDA Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862 +XDA.1 S:L176F, from sars-cov-2-variants/lineage-proposals#1031 +XDB Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia, from sars-cov-2-variants/lineage-proposals#969 +XDC Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singapore, from sars-cov-2-variants/lineage-proposals#902 +XDD Recombinant lineage of EG.5.1.1, JN.1, EG.5.1.1 (breakpoints at 6541-7842 and 25416-26270), USA/France/Spain, from sars-cov-2-variants/lineage-proposals#1024 +XDD.1 S:S704L, from sars-cov-2-variants/lineage-proposals#1203 +XDD.1.1 S:I584V, from sars-cov-2-variants/lineage-proposals#1203 +XDD.1.1.1 S:R346T, from sars-cov-2-variants/lineage-proposals#1450 +XDD.2 S:T307I, from sars-cov-2-variants/lineage-proposals#1176 +XDD.3 S:T572I, S:F456L (T22928C), G12268A, T17574G, France/Europe +XDE Recombinant lineage of GW.5.1 and FL.13.4 (breakpoint at 24034-24046), Pakistan, from #2352 +XDF Recombinant lineage of XBB* (with C335T) and EG.5.1.3 (breakpoint around 2335-9692), from sars-cov-2-variants/lineage-proposals#1088 +XDG Recombinant lineage of FL.37 and EG.5.2.4 (breakpoint at 6729-9693), from #2348 +XDH Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint between 22630-22663), Lithuania/Belarus, from sars-cov-2-variants/lineage-proposals#128 +XDJ Recombinant lineage of XBB.1.16.6 and HK.3.1 (breakpoint between 14857 and 16877), France, from sars-cov-2-variants/lineage-proposals#997 +XDK Recombinant lineage of XBB.1.16.11 (likely) and JN.1.1.1 (breakpoint between 5315 and 6182), France, from #2415 +XDK.1 S:R346T, G11596A, from sars-cov-2-variants/lineage-proposals#1407 +XDK.1.1 S:K182R, S:E213G, India +XDK.1.2 S:F456L +XDK.2 S:K679R, T4996A, C11173T, A23598G, C27297T +XDK.3 S:F456L, ORF1a:F3397L +XDK.4 C25626T +XDK.4.1 S:F456L, France/Luxembourg +XDK.5 S:F456L, C22388T, Spain from #2611 +XDK.6 S:F456L, S:R237K, S:Q1201K, England +XDL Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:I1114T, most with S:L455F(G22927T), China, from #2351 +XDM Recombinant lineage of XDA, GW.5, XDA (breakpoints between 22107-22926 and 24047-25838), from sars-cov-2-variants/lineage-proposals#1163 +XDN Recombinant lineage of JN.1.1 and JD.1 (breakpoint between 24379 and 24989), from #2448 +XDP Recombinant lineage of JN.1.4+T18453C and FL.15 (breakpoint between 26834 and 27809), from #2451 +XDP.1 S:E1092D, after ORF1a:L397P, ORF1a:H388Y, from sars-cov-2-variants/lineage-proposals#1358 +XDP.2 S:E309Q, Brazil/Canada +XDP.3 S:S255F, USA +XDQ Recombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 23605 and 24377), most with T22846C, Vietnam/Japan/South Korea, from #2481 +XDQ.1 S:A475V, Japan/South Korea, from #2497 +XDQ.1.1 S:S60P, C1594T, Japan +XDQ.2 S:N487D, Vietnam +XDQ.3 S:681H, Indonesia +XDR Recombinant lineage of JD.1.1.1 and JN.1.1 (breakpoint between 11043 and 11726), Brazil, from #2477 +XDR.1 S:F59S, G6077T, A14031G, C26801T, Brazil/Peru +XDS Recombinant lineage of EG.5.1.3, JN.3.2.1, EG.5.1.3 (breakpoints at 8294-8392 and 26834-27506), from sars-cov-2-variants/lineage-proposals#1267 +XDT Recombinant lineage of BA.2.86.4, GK.1 (breakpoint between 23673-24378), Ireland/UK, from #2485 +XDU Recombinant lineage of BA.2.86.1, XBB.1.16 (breakpoint between 11957-12729), Japan, from #2502 +XDV Recombinant lineage of XDE, JN.1, XDE, JN.1 (breakpoints between 19327-21608, 27916-28296, 28959-29534), USA/China, from #2402 +XDV.1 S:F456L (T22930A), on C11572T branch, Hong Kong +XDW Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471 +XDY Recombinant lineage of LB.1.2.1 and KP.3.2 (breakpoint between 22131-22599), Sweden/Spain, from sars-cov-2-variants/lineage-proposals#1559 +XDZ Recombinant lineage of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America +XEA Recombinant lineage of JN.1.63.1 and EG.5 (breakpoint between 27057-27915), East Asia +XEB Recombinant lineage of FL.15, JN.1.4+T18453C, FL.15 (breakpoints at 774-896 and 26834-27809), USA +*A.2.1 Withdrawn: Lineage with sequences predominantly from Panama +*A.8 Withdrawn: Indian lineage merged with A.9 +*A.10 Withdrawn: Spanish lineage reassigned to A.5 +*A.13 Withdrawn: Cote d'Ivoire lineage +*A.14 Withdrawn: Cote d'Ivoire lineage +*A.20 Withdrawn: UAE lineage +*B.1.1.2 Withdrawn: UK and Australia +*B.1.1.6 Withdrawn: USA (TX) +*B.1.1.20 Withdrawn: UK lineage +*B.1.1.32 Withdrawn: Indian lineage +*B.1.1.35 Withdrawn: UK lineage +*B.1.1.36 Withdrawn: USA +*B.1.1.60 Withdrawn: Northern Ireland lineage +*B.1.1.64 Withdrawn: UK lineage +*B.1.1.65 Withdrawn: USA lineage +*B.1.1.66 Withdrawn: South African lineage +*B.1.1.73 Withdrawn: Reassigned lineage +*B.1.1.76 Withdrawn: USA lineage +*B.1.1.78 Withdrawn: Russian lineage +*B.1.1.79 Withdrawn: Russian lineage +*B.1.1.80 Withdrawn: Bangladesh lineage +*B.1.1.81 Withdrawn: Northern Ireland lineage +*B.1.1.85 Withdrawn: USA lineage +*B.1.1.94 Withdrawn: Brazil lineage +*B.1.1.96 Withdrawn: Saudi Arabia/ Russia lineage +*B.1.1.102 Withdrawn: Latvian lineage +*B.1.1.103 Withdrawn: Bangladesh lineage +*B.1.1.104 Withdrawn: Netherlands/ Europe lineage +*B.1.1.105 Withdrawn: Turkish lineage +*B.1.1.106 Withdrawn: UK lineage +*B.1.1.108 Withdrawn: UK lineage +*B.1.1.124 Withdrawn: UK/ Switzerland lineage +*B.1.1.126 Withdrawn: USA lineage +*B.1.1.131 Withdrawn: UK lineage +*B.1.1.140 Withdrawn: Russian lineage +*B.1.1.143 Withdrawn: Brazilian lineage, merged into lineage B.1.1.28 +*B.1.1.146 Withdrawn: UK lineage +*B.1.1.150 Withdrawn: UK lineage +*B.1.1.151 Withdrawn: UK lineage +*B.1.1.156 Withdrawn: South African lineage +*B.1.1.167 Withdrawn: Denmark/ E European lineage +*B.1.1.173 Withdrawn: UK lineage +*B.1.1.179 Withdrawn: Indian (split from B.1.1.32) +*B.1.1.183 Withdrawn: South Korea +*B.1.1.195 Withdrawn: UK lineage +*B.1.1.199 Withdrawn: UK (split from B.1.1.64) +*B.1.1.206 Withdrawn: South Africa (mostly from B.1.1.54) +*B.1.1.211 Withdrawn: French, swiss, UK, Belgian +*B.1.1.212 Withdrawn: Indian (split from B.1.1.32) +*B.1.1.215 Withdrawn: England with a spanish base +*B.1.1.223 Withdrawn: USA, NZ, England, one Russia +*B.1.1.233 Withdrawn: USA (WA) +*B.1.1.235 Withdrawn: merged with B.1.1.115 +*B.1.1.238 Withdrawn: UK and New Zealand (split from B.1.1.7) +*B.1.1.245 Withdrawn: Northern Ireland lineage, previously B.1.1.60 (split) +*B.1.1.246 Withdrawn: Russia +*B.1.1.247 Withdrawn: Northern Europe (UK, NL, Switzerland) and Northern Africa (Egypt and Morocco), Gambia (some B.1.1.55) +*B.1.1.248 Withdrawn: Brazilian lineage reassigned B.1.1.28 +*B.1.1.250 Withdrawn: UK lineage +*B.1.1.252 Withdrawn: South Africa (formerly B.1.1.66) +*B.1.1.259 Withdrawn: UK (split from B.1.1.64) +*B.1.1.260 Withdrawn: UK (split from B.1.1.64) +*B.1.1.264 Withdrawn: Wales lineage, previously part of B.1.1.30 +*B.1.1.276 Withdrawn: Previously part of B.1.1.55, USA lineage +*B.1.1.278 Withdrawn: UK lineage +*B.1.1.281 Withdrawn: Indian lineage, previously part of B.1.1.32 +*B.1.1.287 Withdrawn: USA lineage +*B.1.1.292 Withdrawn: UK lineage +*B.1.1.293 Withdrawn: Gambian lineage +*B.1.1.295 Withdrawn: UK/Australia lineage +*B.1.1.313 Withdrawn: English lineage +*B.1.1.314 Withdrawn: Brazilian lineage, previously part of B.1.1.33 +*B.1.1.439 Withdrawn: Wales lineage, reassigned to B.1.1.29 +*B.1.1.527 Withdrawn: Lineage in multiple countries, reassigned to C.38, from #150 +*BA.1.11 Withdrawn: Does not have a reliable defining mutation +*BA.2.3.3 Withdrawn: Does not have a reliable defining mutation, from #524 +*BA.2.36.1 Withdrawn: Redesignated as BA.2.82 +*BA.2.84 Withdrawn: Redesignated as BA.2.31.1 +*BA.5.1.13 Withdrawn: Defined solely by Artic v3 artefacts, from #1029 +*BF.7.25 Withdrawn: Invisible to pangolin as positions C29708T is part of masked regions 1-255 and 29674-29903. Alias of B.1.1.529.5.2.1.7.25, C29708T +*BA.5.2.15 Withdrawn: Redesignated as CF.1, being a child of BA.5.2.27, B.1.1.529.5.2.15, found in USA and Mexico, from #1054 +*BA.5.2.17 Withdrawn: Redesignated as BV.1, being a child of BA.5.2.20 +*BQ.1.1.33 Withdrawn: Alias of B.1.1.529.5.3.1.1.1.1.1.1.33, USA lineage, child of BQ.1.1.3 +*BA.5.4 Withdrawn: England, Denmark, Spain and Scotland. Sublineage of BA.5.2.1 (with G11837T (ORF1a:V3858L) (nsp6:V289L)), from #618 +*B.1.3.1 Withdrawn: South Korean lineage +*B.1.3.2 Withdrawn: Argentinian lineage +*B.1.3.3 Withdrawn: Israel lineage +*B.1.3.4 Withdrawn: Israel/ UK lineage +*B.1.5 Withdrawn: Reassigned to B.1 and additional sublineages as this lineage has lost monophyletic status and split into multiple parts of the B.1 tree. Previously had a Spanish base, European lineage/ lots of Spanish sequences towards the basal end of the subtree and exports around the globe. +*B.1.5.2 Withdrawn: Reassigned B.1.190, Netherlands lineage +*B.1.5.5 Withdrawn: Reassigned B.1.225 +*B.1.5.6 Withdrawn: UK lineage reassigned B.1.223 +*B.1.5.11 Withdrawn: Reassigned B.1.189, USA/ Mexico lineage +*B.1.5.12 Withdrawn: Reassigned to B.1.416, Senegal/ Gambia lineage +*B.1.5.13 Withdrawn: Reassigned B.1.180, Romanian lineage +*B.1.5.15 Withdrawn: Reassigned B.1.185, USA lineage +*B.1.5.17 Withdrawn: Reassigned B.1.181, USA lineage +*B.1.5.16 Withdrawn: South African lineage, reassigned to B.1.237 +*B.1.5.18 Withdrawn: Reassigned B.1.256 +*B.1.5.19 Withdrawn: South African lineage reassigned to B.1.381 +*B.1.5.21 Withdrawn: Reassigned B.1.418, Scottish lineage +*B.1.5.25 Withdrawn: Reassigned B.1.229 +*B.1.5.26 Withdrawn: Reassigned B.1.232 +*B.1.5.27 Withdrawn: USA lineage (CA), reassigned to B.1.243 +*B.1.5.28 Withdrawn: Reassigned B.1.231 +*B.1.5.29 Withdrawn: USA lineage (WI/ IL) reassigned to B.1.415 +*B.1.5.30 Withdrawn: UK lineage +*B.1.5.31 Withdrawn: South African lineage, reassigned B.1.417 +*B.1.5.32 Withdrawn: Colombian lineage, reassigned B.1.420 +*B.1.5.33 Withdrawn: Split up in current tree, reassigned to B.1. UK lineage +*B.1.5.34 Withdrawn: Reassigned to B.1.222, reassigned Scottish lineage +*B.1.5.35 Withdrawn: Indian lineage reassigned B.1, lacks any structure in current tree +*B.1.5.36 Withdrawn: Indian lineage reassigned to B.1.136 +*B.1.8.2 Withdrawn: Reassigned in the current tree. USA lineage (CA) +*B.1.9.6 Withdrawn: North Macedonia, Switzerland +*B.1.11 Withdrawn: UK lineage, reassigned B.1- broken up in current tree +*B.1.19 Withdrawn: USA lineage (WI), reassigned B.1- broken up in current tree +*B.1.21 Withdrawn: Split up Washington (USA), reassigned mostly to B.1.371 +*B.1.25 Withdrawn: Australian lineage +*B.1.26 Withdrawn: USA/Gambia lineage +*B.1.34 Withdrawn: English lineage, reassigned B.1 +*B.1.36.3 Withdrawn: Danish lineage +*B.1.36.4 Withdrawn: Netherlands lineage +*B.1.36.5 Withdrawn: Saudi Arabia lineage, reassigned to parent lineage B.1.36 +*B.1.36.6 Withdrawn: Norway lineage +*B.1.36.11 Withdrawn: Netherlands lineage +*B.1.36.13 Withdrawn: Irish lineage +*B.1.36.14 Withdrawn: Danish lineage +*B.1.36.15 Withdrawn: Saudi Arabia lineage +*B.1.74 Withdrawn: Spanish lineage +*B.1.75 Withdrawn: Reassigned in the current tree. English lineage +*B.1.79 Withdrawn: UK lineage, some now reassigned to B.1.5 +*B.1.80 Withdrawn: Reassigned in the current tree. Indian lineage +*B.1.82 Withdrawn: Reassigned in the current tree. UK lineage +*B.1.88 Withdrawn: Scottish lineage +*B.1.89 Withdrawn: Reassigned in the current tree. UK lineage +*B.1.90 Withdrawn: Reassigned in the current tree. Scottish lineage +*B.1.95 Withdrawn: Indian lineage +*B.1.98 Withdrawn: UK lineage +*B.1.102 Withdrawn: Reassigned in the current tree. Iceland lineage +*B.1.107 Withdrawn: Reassigned in the current tree. Danish lineage, with USA and UK sequences +*B.1.109 Withdrawn: Luxembourg lineage +*B.1.114 Withdrawn: Reassigned in the current tree. Canadian lineage +*B.1.133 Withdrawn: Reassigned in the current tree. USA lineage (WA) +*B.1.135 Withdrawn: Reassigned in the current tree. Small Portuguese lineage +*B.1.136 Withdrawn: Reassigned in the current tree. Indian lineage, split up and reassigned to B.1 +*B.1.138 Withdrawn: Reassigned in the current tree. Small Australian lineage +*B.1.141 Withdrawn: Reassigned in the current tree. Scottish lineage, first wave of N439K +*B.1.144 Withdrawn: South African lineage +*B.1.150 Withdrawn: Reassigned lineage +*B.1.152 Withdrawn: English lineage +*B.1.154 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.156 Withdrawn: Reassigned in the current tree. Scottish lineage +*B.1.160.1 Withdrawn: Reassigned B.1.523 English lineage +*B.1.160.2 Withdrawn: Reassigned B.1.523 English lineage +*B.1.160.3 Withdrawn: Indonesian lineage (now B.1.470) +*B.1.160.4 Withdrawn: English lineage (now B.1.471) +*B.1.160.5 Withdrawn: Danish lineage +*B.1.160.6 Withdrawn: Danish lineage, reassigned B.1.160 lack of resolution in current tree +*B.1.177.1 Withdrawn: Denmark +*B.1.177.13 Withdrawn: now part of B.1.177.17 +*B.1.177.22 Withdrawn: UK lineage +*B.1.177.79 Withdrawn: Latvian lineage. Did not have a defining mutation within the coding region. Therefore merged into B.1.177.60 +*B.1.183 Withdrawn: Reassigned in the current tree. Canadian lineage +*B.1.185 Withdrawn: Reassigned in the current tree. USA lineage (previously B.1.5.15) +*B.1.186 Withdrawn: Saudi-arabian/ Indian lineage (now B.1.260) +*B.1.191 Withdrawn: Reassigned in the current tree. Previously B.1.5.21, Scottish lineage +*B.1.193 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.196 Withdrawn: USA lineage +*B.1.197 Withdrawn: Australian/ New Zealand lineage +*B.1.200 Withdrawn: Reassigned in the current tree. Previously part of B.1.98, reassigned UK lineage +*B.1.202 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.204 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.207 Withdrawn: USA lineage (TX) +*B.1.209 Withdrawn: Small Scottish lineage +*B.1.216 Withdrawn: USA lineage +*B.1.217 Withdrawn: Reassigned in the current tree. Indian lineage Reassigned from B.1.80, split this assignment +*B.1.226 Withdrawn: Reassigned in the current tree. Equatorial Guinea lineage +*B.1.228 Withdrawn: Reassigned in the current tree. USA lineage, reassigned from B.1.5.27 split +*B.1.230 Withdrawn: Reassigned in the current tree. USA lineage, reassigned from B.1.5.27 split +*B.1.244 Withdrawn: Reassigned in the current tree. Saudi Arabian lineage that previously was part of B.1.160 +*B.1.246 Withdrawn: Reassigned in the current tree. Saudi Arabian lineage, previously some assigned B.1.160 +*B.1.253 Withdrawn: Reassigned in the current tree. UK lineage +*B.1.255 Withdrawn: North American lineage, with other global diversity (Now all over tree) +*B.1.257 Withdrawn: Reassigned in the current tree. UK lineage +*B.1.258.1 Withdrawn: French lineage +*B.1.258.8 Withdrawn: Danish lineage +*B.1.258.13 Withdrawn: Reassigned in the current tree. Danish lineage +*B.1.259 Withdrawn: Saudi Arabia/ India lineage (now in B.1.260) +*B.1.261 Withdrawn: Saudi Arabian lineage (now in B.1.260) +*B.1.262 Withdrawn: Reassigned in the current tree. Danish lineage +*B.1.266 Withdrawn: Reassigned in the current tree. Austrian lineage +*B.1.269 Withdrawn: Reassigned in the current tree. Slovenian lineage +*B.1.271 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.272 Withdrawn: Reassigned in the current tree. France/ Australian lineage +*B.1.275 Withdrawn: France lineage +*B.1.278 Withdrawn: Reassigned in the current tree. UK/ Australia lineage, previously part of B.1.13 +*B.1.283 Withdrawn: USA lineage +*B.1.286 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.288 Withdrawn: Reassigned in the current tree. Denmark lineage +*B.1.290 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.295 Withdrawn: Reassigned in the current tree. Australian lineage +*B.1.296 Withdrawn: Reassigned in the current tree. USA/ Australian lineage +*B.1.297 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.297.1 Withdrawn: Reassigned in the current tree. Canadian lineage +*B.1.299 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.300 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.303 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.307 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.312 Withdrawn: USA lineage +*B.1.317 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.322 Withdrawn: USA lineage, reassigned B.1 +*B.1.327 Withdrawn: Reassigned in the current tree. Danish lineage +*B.1.331 Withdrawn: USA lineage +*B.1.333.1 Withdrawn: USA lineage (WA) (all B.1.169) +*B.1.339 Withdrawn: Reassigned in the current tree. Irish lineage +*B.1.345 Withdrawn: Reassigned in the current tree. Canadian lineage +*B.1.347 Withdrawn: Reassigned in the current tree. Canadian lineage, previously part of B.1.114 lineage +*B.1.351.4 Withdrawn: Potential contaminant lineage from mixture of B.1.351 and Delta, from #134. Sequences from Botswana, do not have E484K or N501Y but have L452R and T478K +*B.1.352 Withdrawn: Reassigned in the current tree. USA lineage (CA) +*B.1.353 Withdrawn: Reassigned in the current tree. European lineage +*B.1.364 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.365 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.368 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.373 Withdrawn: Reassigned in the current tree. Swedish lineage +*B.1.374 Withdrawn: Reassigned in the current tree. European lineage +*B.1.374.1 Withdrawn: Reassigned in the current tree. Bangladesh lineage +*B.1.376 Withdrawn: Wales lineage +*B.1.386 Withdrawn: Reassigned in the current tree. USA lineage +*B.1.392 Withdrawn: UK lineage +*B.1.394 Withdrawn: North Macedonian lineage +*B.1.410 Withdrawn: Reassigned in the current tree. Danish lineage +*B.1.412 Withdrawn: Russian lineage +*B.1.414 Withdrawn: Netherlands lineage +*B.1.419 Withdrawn: Iceland lineage +*B.1.440 Withdrawn: USA lineage (All NM, one AZ) +*B.1.447 Withdrawn: Saudi Arabian lineage +*B.1.449 Withdrawn: Saudi Arabia (mixture of B.1.260 and B.1.160) +*B.1.454 Withdrawn: India (was part of B.1.160) +*B.1.455 Withdrawn: Saudi Arabia (was part of B.1.247) +*B.1.457 Withdrawn: UK, Norway, South Korea, Denmark (mostly B.1.160) +*B.1.457.1 Withdrawn: USA (MI) plus England (was B.1.247, B.1.160) +*B.1.461 Withdrawn: India (from B.1.247) +*B.1.464 Withdrawn: India and Nepal +*B.1.472 Withdrawn: England and Denmark (was part of B.1.160) +*B.1.477 Withdrawn: England (all were B.1.275) +*B.1.481 Withdrawn: DRC and Senegal base, into Switzerland +*B.1.484 Withdrawn: France and USA (MI) +*B.1.512 Withdrawn: UK, Australia, USA +*B.1.514 Withdrawn: USA (TX) split from B.1.2 +*B.1.519 Withdrawn: England, split from B.1.117 +*B.1.526.1 Withdrawn: Issue 45. New York. Sublineage of B.1.526 (with spike mutations T95I and D253G) that appears to have several more unique mutations. +*B.1.526.2 Withdrawn: Issue 45. New York. Sublineage of B.1.526 (with spike mutations T95I and D253G) that appears to have several more unique mutations. +*B.1.526.3 Withdrawn: Issue 45. Belgium and Luxembourg lineage +*BA.5.2.64 Withdrawn: Reassigned BA.5.12 Switzerland lineage +*BB.1 Withdrawn: Redesignated as B.1.621.2 +*AY.9.1 Withdrawn: Merged into AY.9.2 as these lineages likely form a single clade +*AY.12 Withdrawn: Reassigned to AY.122.1 +*AY.39.4 Withdrawn: Reassigned AY.134. Denmark lineage, from #406 +*AY.75.1 Withdrawn: Did not have a defining mutation within the coding region so was merged into AY.75 +*AY.89 Withdrawn: Merged into AY.4, from #398 +*AY.96 Withdrawn: Based on discussion in, from #435 +*AY.97 Withdrawn: Reassigned to AY.5.5 +*AY.115 Withdrawn: Merged into AY.116 as these lineages likely form a single clade +*B.1.624 Withdrawn: India lineage, from #91. Redesignated as B.1.1.526 +*B.1.628 Withdrawn: Identified as a recombinant lineage and therefore renamed XB, from #189 +*B.2.1 Withdrawn: Reassigned to B.40 +*B.2.6 Withdrawn: Reassigned to B.35 +*B.2.10 Withdrawn: Reassigned to B.41 +*B.2.11 Withdrawn: Reassigned to B.36 +*B.2.12 Withdrawn: Reassigned to B.30 +*B.6.7 Withdrawn: USA/Texas +*B.14 Withdrawn: USA lineage +*B.48 Withdrawn: Reassigned to B.23 +*B.54 Withdrawn: Distributed amongst other lineages +*B.59 Withdrawn: Originally Latvian & Ireland, no longer monophyletic +*C.15 Withdrawn: Alias of B.1.1.1.15, Denmark lineage +*E.1 Withdrawn: Reassigned B.1.416.1. French lineage within the diversity of a Senegal/ Gambia lineage +*F.1 Withdrawn: Alias of B.1.36.17.1, New Zealand lineage +*H.1 Withdrawn: Alias of B.1.1.67.1, South African lineage, split from B.1.1.10 +*I.1 Withdrawn: Alias of B.1.1.217.1, Latvian lineage, split from B.1.1.25 +*J.1 Withdrawn: Alias of B.1.1.250.1, Australian lineage +*HK.1.1 Withdrawn as smaller than thought (only 6 sequences have 257V and G22927T): Alias of XBB.1.9.2.5.1.1.1.1, S:L455F (G22927T), China (now considered as an HK.3+S:G257D branch being misplaced with HK.1+S:L455F) +*HK.10 Withdrawn unless lineage grows: Alias of XBB.1.9.2.5.1.1.10, S:L455F (G22927T), on C19983T branch, China (now considered as HK.3 with homoplastic C19983T) +*HK.3.11 Withdrawn, as part of 14988C sublineage of EG.5.1.1, not HK.3: Alias of XBB.1.9.2.5.1.1.3.11, S:A475V, Finland/Denmark/Sweden +*JN.1.33 Redesignated as JN.1.39.3, Alias of B.1.1.529.2.86.1.1.33, S:A67V, G2782T, C5512T, China from #2498 +*KD.5 Withdrawn: Alias of XBC.1.3.1.5, S:L244F, Australia, indel artefact caused false S:L244F (#2405) +*KR.2 Redesignated as LT.1 (JN.1.1.3.1) due to lack of C9142T