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Bulk bam problem #13

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juavasiliadis opened this issue Aug 13, 2024 · 0 comments
Open

Bulk bam problem #13

juavasiliadis opened this issue Aug 13, 2024 · 0 comments

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@juavasiliadis
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Hi,

I have a problem running scan2 on my data. I tried to run it on pta-wes bam as sc-bam and wgs bam as a bulk. Also I tried to use wes bam as a bulk, but in both cases I got the following error:

"0 somatic candidates detected. SCAN2 requires somatic candidates to have 0 supporting reads in the matched bulk - perhaps your bulk is too closely related to your single cells?"
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@juavasiliadis