delete intermediate smoothed graphs

pangenome · Apr 16, 2022 · b4d198b · b4d198b
1 parent c460c91
commit b4d198b
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/pggb b/pggb
@@ -623,11 +623,13 @@ fi
 if [[ $keep_intermediate_files != true ]];
 then
   rm -f "$prefix_seqwish".seqwish.{gfa,og}
+  rm -f "$prefix_smoothed".smooth.[0-9]*.{gfa,og}
 
   if [[ $normalize == true ]] && [[ $write_maf == false ]];
   then
     rm -f "$prefix_smoothed".smooth.{gfa,og}
   fi
+
 fi
 
 if [[ $compress == true ]];